genome.fa.s5.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  185  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55624936--55625099	42	3.9	41	81	6	175	28	13	26	32	1.94
55624944--55625099	85	1.8	84	83	1	204	27	14	26	32	1.94
55628857--55629032	46	3.8	46	79	12	216	20	21	29	28	1.98
55628854--55629025	93	1.8	93	96	0	317	20	21	29	27	1.98
55638308--55638459	39	3.9	39	92	0	241	23	23	30	22	1.99
55638308--55638489	39	4.6	39	89	0	220	23	23	30	21	1.99
55645008--55645158	39	3.9	39	91	2	232	24	22	31	21	1.99
55645008--55645157	77	1.9	79	90	2	241	24	22	30	22	1.99
55645008--55645188	39	4.6	39	86	2	220	24	23	30	21	1.99
55652193--55652344	39	3.9	39	92	0	241	24	22	30	22	1.99
55660966--55661231	144	1.8	144	87	1	399	30	19	17	32	1.95
55667250--55667425	50	3.5	49	80	7	176	28	28	17	25	1.97
55667250--55667436	101	1.9	99	83	4	241	27	29	17	25	1.98
55670680--55670741	30	2.1	30	96	0	115	33	20	3	41	1.69
55678100--55678194	43	2.2	43	86	0	127	21	22	31	25	1.98
55680790--55681000	40	5.3	40	82	3	230	26	25	22	25	2.00
55682982--55683081	29	3.5	29	76	9	98	29	31	14	26	1.94
55683003--55683105	29	3.6	28	77	2	80	28	30	13	28	1.94
55684959--55685324	46	8.0	46	93	1	592	22	23	16	37	1.93
55687761--55687828	30	2.3	30	84	5	84	27	19	5	47	1.72
55694471--55694503	5	6.6	5	96	0	57	15	0	3	81	0.80
55702463--55702567	46	2.2	48	86	6	142	35	14	24	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55712278--55712364	37	2.3	36	92	5	138	27	33	18	20	1.96
55712433--55712685	49	5.1	49	95	1	443	30	28	8	33	1.86
55719090--55719240	40	3.8	40	90	0	239	21	19	30	28	1.98
55719077--55719244	80	2.1	80	89	1	257	22	20	29	27	1.98
55727199--55727406	40	5.2	40	90	1	303	23	21	28	26	1.99
55734818--55734945	42	3.0	43	83	6	143	27	26	20	25	1.99
55734786--55734943	86	1.9	84	82	5	201	26	24	20	27	1.99
55742886--55743063	39	4.5	39	90	3	234	24	21	29	24	1.99
55742833--55743063	40	5.8	40	85	6	258	24	21	29	25	1.99
55742833--55743064	79	2.9	79	83	6	220	24	21	28	25	1.99
55750908--55751085	39	4.5	39	91	2	241	24	21	29	24	1.99
55760347--55760540	47	4.1	47	87	0	271	32	10	29	26	1.90
55760511--55760694	98	1.9	96	89	4	289	35	5	27	31	1.81
55760510--55760694	48	3.8	48	88	5	282	35	5	27	31	1.81
55760840--55760985	37	3.9	37	97	0	265	22	19	30	27	1.98
55773124--55773219	47	2.0	47	93	0	165	30	13	12	43	1.81
55774506--55774584	31	2.5	31	89	0	122	27	27	18	25	1.98
55774612--55774699	42	2.1	42	95	0	158	35	15	14	34	1.89
55776620--55776822	45	4.5	44	88	4	293	23	19	28	28	1.98
55790017--55790216	27	7.4	27	82	0	220	36	18	20	25	1.94
55791991--55792042	21	2.8	17	76	20	59	19	11	5	63	1.47
55793317--55793485	46	3.6	47	77	10	143	30	19	28	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55794392--55794438	22	2.1	22	84	0	58	23	4	0	72	1.02
55797726--55797755	11	2.7	11	100	0	60	26	0	0	73	0.84
55799334--55799371	16	2.4	16	100	0	76	23	0	18	57	1.40
55800884--55801104	40	5.6	40	81	2	232	24	25	23	25	2.00
55800884--55801104	80	2.8	79	82	3	257	24	25	23	25	2.00
55808858--55809078	40	5.6	40	79	3	223	24	26	23	25	2.00
55811833--55811970	39	3.5	39	86	4	172	23	21	29	24	1.99
55815609--55815706	28	3.5	28	84	4	108	29	16	24	29	1.96
55824041--55824115	29	2.6	29	78	4	80	21	36	21	21	1.96
55824099--55824172	29	2.6	29	95	0	139	27	31	14	27	1.95
55834531--55834660	40	3.3	39	83	4	163	23	28	25	23	1.99
55837100--55837242	43	3.3	43	84	0	178	34	30	20	13	1.92
55837231--55837391	40	4.0	40	95	0	268	26	31	22	19	1.98
55847520--55847598	31	2.5	31	95	0	140	26	24	18	30	1.98
55847804--55847992	26	7.3	26	85	3	224	28	22	20	28	1.98
55847804--55847992	52	3.7	52	90	4	278	28	22	20	28	1.98
55848790--55848881	27	3.4	27	89	3	123	19	25	19	35	1.95
55848932--55849311	27	14.0	27	77	6	167	33	9	19	37	1.84
55848920--55849191	54	5.0	54	76	7	217	31	9	19	40	1.83
55848995--55849183	81	2.3	79	81	7	245	30	8	19	41	1.82
55850344--55850398	27	2.0	27	100	0	110	32	16	14	36	1.89
55862109--55862220	27	4.1	27	79	13	97	38	22	12	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55862212--55862266	27	2.0	27	82	0	65	34	18	20	27	1.95
55865274--55865461	40	4.7	40	89	1	261	26	29	20	23	1.99
55865254--55865461	80	2.6	79	87	6	294	27	28	20	23	1.99
55869131--55869181	24	2.1	24	92	0	84	13	15	31	39	1.87
55882870--55882930	21	2.9	21	81	13	81	31	19	11	37	1.87
55882856--55882930	10	7.1	11	79	7	75	32	17	13	37	1.88
55883280--55883336	20	2.8	20	89	2	87	24	36	19	19	1.94
55886190--55886216	13	2.1	13	100	0	54	51	14	0	33	1.43
55888129--55888282	76	2.0	76	100	0	308	48	3	19	27	1.66
55889217--55889291	6	12.5	6	84	5	98	78	0	5	16	0.92
55889223--55889291	30	2.3	30	90	5	113	79	0	4	15	0.88
55894722--55894748	13	2.1	13	100	0	54	51	14	0	33	1.43
55898103--55898174	27	2.6	28	80	8	85	15	20	25	38	1.92
55898609--55898661	27	2.0	27	84	0	70	26	7	18	47	1.75
55899057--55899113	28	2.0	29	83	10	73	28	7	17	47	1.73
55903668--55903829	71	2.3	72	86	3	238	36	19	26	17	1.94
55911176--55911336	70	2.3	72	85	4	229	36	19	26	17	1.94
55913205--55913278	29	2.6	29	95	0	139	27	31	14	27	1.95
55913146--55913278	58	2.3	58	80	2	133	24	33	17	24	1.96
55921015--55921089	28	2.6	28	78	2	87	21	36	20	22	1.96
55921073--55921146	29	2.6	29	95	0	139	27	31	14	27	1.95
55923332--55923429	28	3.5	28	84	4	108	29	16	24	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55927383--55927420	20	1.9	20	88	0	58	60	0	0	39	0.97
55927809--55927850	18	2.3	18	80	8	50	33	2	4	59	1.31
55927897--55928032	18	7.6	18	65	17	68	32	2	1	63	1.18
55929366--55929432	20	3.3	20	78	15	68	35	0	8	55	1.32
55931860--55931884	2	12.5	2	100	0	50	52	0	0	48	1.00
55932589--55932621	3	11.0	3	100	0	66	33	0	0	66	0.92
55936029--55936308	50	5.5	50	80	4	294	24	16	27	31	1.96
55936077--55936308	101	2.3	99	85	5	297	25	18	26	30	1.98
55936030--55936315	151	1.9	152	89	1	448	23	17	26	32	1.96
55939250--55939280	11	2.8	11	100	0	62	19	38	25	16	1.92
55942190--55942888	350	2.0	350	94	1	1240	32	8	18	39	1.82
55942877--55942903	10	2.7	10	100	0	54	29	0	11	59	1.32
55945609--55945802	39	4.9	39	84	3	194	23	31	19	24	1.98
55945609--55945804	77	2.5	79	84	4	227	23	31	19	25	1.98
55945649--55945804	39	4.0	39	85	5	217	22	31	18	27	1.97
55948723--55948761	2	19.5	2	100	0	78	48	0	0	51	1.00
55950793--55950821	15	2.0	15	93	6	51	55	20	13	10	1.68
55954484--55954663	96	1.9	96	85	2	254	22	28	20	28	1.98
55954484--55954671	48	3.9	48	82	1	225	22	27	20	29	1.98
55954648--55954696	25	2.0	25	91	0	80	22	20	16	40	1.91
55961154--55961190	13	2.8	13	95	4	65	59	10	0	29	1.31
55965644--55965760	32	3.7	32	90	0	180	25	17	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55975544--55975673	40	3.3	39	83	4	163	23	28	25	23	1.99
55983580--55983709	40	3.3	39	83	4	163	23	28	25	23	1.99
55988701--55988862	71	2.3	72	86	3	238	36	19	26	17	1.94
55996211--55996371	71	2.3	72	85	4	229	36	19	26	16	1.93
56001397--56001474	27	2.9	27	81	7	95	14	23	24	38	1.91
56002686--56002835	29	5.1	29	82	1	156	20	22	15	42	1.89
56003990--56004031	22	1.9	22	90	0	66	16	21	23	38	1.93
56007654--56007705	27	1.9	27	88	7	79	17	25	26	30	1.97
56008440--56008510	29	2.4	29	81	4	81	22	21	12	43	1.86
56034861--56034928	33	2.0	34	88	2	102	32	25	23	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335