genome.fa.s5.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  93  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30106878--30106914	17	2.1	18	90	5	58	56	0	13	29	1.37
30109391--30109630	89	2.7	86	77	15	242	59	12	3	24	1.50
30110137--30110202	27	2.4	27	89	0	105	50	30	0	19	1.48
30110397--30110503	52	2.1	48	85	10	135	22	21	9	46	1.79
30110512--30110829	112	2.8	111	79	7	320	38	16	22	22	1.92
30112456--30112504	21	2.3	21	82	0	62	4	48	18	28	1.66
30112916--30112944	13	2.1	14	93	6	51	55	6	0	37	1.27
30114980--30115469	27	18.2	27	85	4	659	26	22	10	40	1.87
30115474--30115668	27	7.2	27	84	2	223	35	17	19	26	1.94
30115868--30115922	27	2.1	26	89	3	83	16	23	25	34	1.95
30116038--30116096	22	2.7	22	81	0	64	20	25	22	32	1.98
30116452--30116614	6	26.8	6	74	16	140	20	17	14	47	1.82
30116455--30116561	43	2.5	42	87	6	144	19	19	14	45	1.85
30116452--30116614	61	2.7	61	86	8	210	20	17	14	47	1.82
30116452--30116635	30	6.1	29	76	13	167	20	17	14	47	1.82
30119583--30119892	96	3.3	93	86	7	376	21	22	14	41	1.89
30119627--30119906	46	6.0	46	85	5	364	22	22	14	40	1.90
30123123--30123167	11	3.9	11	80	11	54	35	0	2	62	1.08
30124971--30125385	46	9.0	46	89	3	514	41	13	23	20	1.89
30124989--30125385	183	2.2	184	85	0	535	41	14	23	20	1.89
30125666--30125698	17	2.0	17	94	5	59	48	0	15	36	1.45
30126870--30126896	12	2.2	12	100	0	54	33	25	7	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30128611--30128741	9	14.7	9	71	12	74	36	0	15	47	1.51
30128705--30128736	16	2.0	16	93	0	55	34	0	15	50	1.45
30131516--30131547	15	2.1	15	94	0	55	28	6	0	65	1.16
30132113--30132148	16	2.2	17	90	5	56	52	38	0	8	1.32
30137989--30138027	13	3.0	13	81	11	53	61	5	17	15	1.51
30142493--30142583	47	1.9	47	93	0	155	40	15	18	25	1.90
30143207--30143232	2	13.0	2	100	0	52	50	0	0	50	1.00
30147320--30147406	21	4.0	23	80	10	92	37	25	21	14	1.92
30148915--30148966	18	2.7	18	82	8	59	3	17	5	73	1.19
30148914--30148966	27	1.9	28	81	11	65	3	16	5	73	1.17
30149617--30149646	11	2.7	11	100	0	60	0	6	6	86	0.70
30151108--30151137	13	2.3	13	94	0	51	60	0	6	33	1.23
30151727--30151799	26	2.6	28	79	12	78	36	8	9	45	1.67
30152988--30153101	57	2.0	57	100	0	228	24	8	28	38	1.85
30154246--30154292	2	23.5	2	91	0	76	0	46	0	53	1.00
30154315--30154344	4	7.5	4	92	0	51	26	0	23	50	1.50
30155799--30155832	2	17.0	2	100	0	68	0	50	0	50	1.00
30158982--30159031	11	4.7	11	80	9	59	32	32	0	36	1.58
30158981--30159031	20	2.5	20	87	6	66	31	31	0	37	1.58
30160686--30160751	30	2.2	30	83	0	78	30	43	18	7	1.77
30160806--30160842	18	2.1	18	89	0	56	21	24	10	43	1.84
30161232--30161498	116	2.3	116	96	0	489	40	4	8	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30161281--30161462	54	3.2	54	71	19	172	42	2	8	46	1.48
30164529--30165055	126	4.2	126	92	1	833	26	21	18	33	1.96
30165166--30165340	96	1.8	96	85	6	246	40	13	1	44	1.54
30169567--30169599	9	3.7	9	84	15	50	12	9	0	78	0.95
30169615--30169688	36	2.0	36	85	12	98	24	5	1	68	1.18
30169642--30169689	18	2.7	17	81	9	60	29	4	0	66	1.10
30169678--30169765	23	4.0	23	70	15	69	40	0	2	56	1.11
30170528--30170616	10	9.4	9	72	11	63	52	2	1	43	1.20
30170528--30170616	19	4.7	18	73	12	63	52	2	1	43	1.20
30170518--30170630	29	3.9	28	76	5	109	53	1	1	42	1.21
30170586--30170674	34	2.7	34	78	16	98	53	1	1	43	1.15
30170639--30170680	14	3.3	13	78	15	52	59	2	0	38	1.10
30170720--30170786	28	2.5	28	95	4	120	70	5	8	14	1.32
30174127--30174246	29	4.1	30	90	5	183	27	28	20	23	1.99
30177234--30177270	18	2.2	18	90	9	60	35	0	0	64	0.94
30177365--30177410	20	2.2	22	77	18	53	67	0	0	32	0.91
30177326--30177399	28	2.6	29	72	8	73	58	2	1	37	1.21
30177390--30177443	23	2.3	24	81	9	67	53	3	0	42	1.18
30177438--30177494	5	11.2	5	80	12	55	75	1	1	21	0.98
30177445--30177494	21	2.5	21	84	12	54	78	2	2	18	0.95
30177448--30177494	16	2.7	18	84	12	55	78	2	2	17	0.94
30177464--30177539	36	2.1	36	83	9	93	75	2	6	15	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30177541--30177604	26	2.4	28	81	7	78	45	1	3	50	1.27
30177541--30177606	27	2.5	26	82	5	78	43	1	3	51	1.26
30177760--30177830	28	2.6	28	77	16	85	45	0	0	54	0.99
30177756--30177797	21	2.0	20	90	4	66	54	0	0	45	0.99
30177759--30177830	18	3.9	18	75	17	67	45	0	0	54	0.99
30178086--30178177	23	4.1	23	73	17	77	56	2	0	41	1.11
30178162--30178213	18	2.9	18	74	5	52	67	1	3	26	1.18
30178249--30178290	9	4.8	9	82	5	59	76	0	14	9	1.02
30178249--30178290	18	2.4	18	92	4	68	76	0	14	9	1.02
30180659--30180720	30	2.2	28	82	8	72	45	0	3	51	1.17
30180566--30180775	110	1.9	110	86	2	298	44	2	5	47	1.41
30180668--30180736	30	2.3	30	87	0	93	43	0	2	53	1.15
30181134--30181164	13	2.4	13	94	0	53	54	0	6	38	1.26
30190113--30190156	21	2.1	21	86	0	61	52	34	0	13	1.41
30190126--30190171	14	3.3	14	80	17	51	52	30	0	17	1.45
30191440--30191501	30	2.1	30	100	0	124	37	22	8	32	1.83
30193493--30193536	3	14.3	3	95	4	79	65	0	0	34	0.93
30194004--30194047	22	2.0	22	86	0	61	52	0	47	0	1.00
30194162--30194214	18	3.1	18	83	5	56	24	0	3	71	1.02
30194553--30194624	23	3.2	23	92	2	110	8	5	54	31	1.54
30194726--30194817	33	2.6	34	81	11	98	8	4	44	42	1.55
30194751--30194793	16	2.5	17	78	21	54	9	2	44	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30198526--30198578	26	2.0	26	82	7	63	26	15	20	37	1.92
30200061--30200170	26	4.2	26	96	0	193	36	23	5	34	1.78
30203139--30203164	3	8.7	3	100	0	52	34	0	0	65	0.93
30217371--30217408	3	12.7	3	100	0	76	34	31	0	34	1.58
30220322--30220391	23	3.0	23	87	8	97	44	35	7	12	1.70
30223602--30223634	16	1.9	18	88	11	52	45	0	3	51	1.16
30230952--30230983	16	2.0	16	93	0	55	46	21	6	25	1.74
30236408--30236508	28	3.5	28	86	6	114	29	26	13	29	1.94
30238622--30238672	5	9.8	5	83	12	59	78	1	0	19	0.85
30238619--30238659	6	7.0	6	86	8	50	78	2	0	19	0.87
30238622--30238672	11	4.8	11	77	18	63	78	1	0	19	0.85
30238622--30238669	15	3.0	16	87	6	71	79	2	0	18	0.84
30240065--30240167	44	2.3	45	85	6	129	30	22	14	33	1.94
30241657--30241697	21	2.1	19	86	9	55	4	14	2	78	1.03
30243611--30243641	12	2.7	11	90	9	53	29	0	0	70	0.87
30243622--30243681	30	2.0	30	90	0	93	26	1	13	58	1.45
30244338--30244371	13	2.7	13	90	4	52	41	0	8	50	1.34
30244640--30244685	24	1.9	24	86	0	65	45	0	2	52	1.13
30246645--30246686	17	2.3	19	80	16	52	19	7	7	66	1.39
30247686--30247717	10	3.2	10	90	0	55	50	9	0	40	1.35
30247678--30247717	20	2.0	20	90	5	62	55	10	0	35	1.34
30263164--30263356	26	7.6	26	68	12	98	37	18	21	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30267875--30267934	30	2.0	30	93	0	102	58	11	1	28	1.43
30272073--30272130	18	3.2	19	78	7	66	25	3	3	67	1.22
30272082--30272134	19	2.9	18	80	5	70	26	1	1	69	1.09
30272360--30272384	2	12.5	2	100	0	50	52	0	0	48	1.00
30272558--30272616	31	1.9	31	86	6	84	35	15	6	42	1.73
30278286--30278319	17	2.0	17	100	0	68	41	23	0	35	1.55
30281117--30281153	3	12.0	3	94	5	65	32	0	0	67	0.91
30281638--30281673	18	1.9	18	88	5	54	27	0	2	69	1.02
30282227--30283007	250	3.0	250	87	8	1082	31	13	18	36	1.89
30282682--30282741	31	1.9	31	96	0	111	38	10	10	41	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335