Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  14  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4902220--4902279
31
1.9
31
89
0
93
41
15
3
40
1.63
4905168--4905210
16
2.8
15
79
6
50
55
0
4
39
1.20
4923270--4923333
26
2.5
26
80
10
76
37
23
4
34
1.76
4923581--4923620
7
5.7
7
96
0
71
30
45
0
25
1.54
4926218--4926273
13
4.3
14
70
22
50
51
0
0
48
1.00
4926218--4926273
25
2.1
27
84
12
73
51
0
0
48
1.00
4927503--4927545
21
2.0
21
86
0
59
27
9
20
41
1.83
4928011--4928054
23
1.9
23
95
0
79
11
29
11
47
1.74
4928671--4928715
23
2.0
23
95
0
81
42
2
31
24
1.67
4934204--4934250
24
2.0
24
100
0
94
59
0
4
36
1.17
4934949--4934996
26
2.0
24
84
15
64
64
2
0
33
1.05
4944587--4944630
22
2.0
22
86
8
63
31
0
2
65
1.05
4950877--4950914
14
2.7
15
84
12
53
26
2
0
71
1.00
4964853--4964894
20
2.0
20
82
13
50
23
11
7
57
1.59
4976246--4976294
18
2.7
18
75
12
55
53
8
12
26
1.66
4984283--4984334
27
1.9
27
96
0
95
38
0
15
46
1.46
4984562--4984627
21
3.2
21
73
2
62
19
19
16
43
1.88
4984557--4984670
41
2.7
42
76
2
122
18
21
17
42
1.89
4988671--4988790
49
2.4
50
86
4
163
30
28
15
25
1.96
4988772--4988807
17
2.1
17
94
0
63
25
19
22
33
1.97
4992480--4992565
46
1.9
44
90
4
136
33
13
23
29
1.93
4992482--4992606
44
2.8
45
81
4
135
34
14
23
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4995154--4995330
47
3.8
46
75
13
182
31
28
18
21
1.97
4995162--4995333
94
1.8
93
88
1
263
30
29
19
21
1.97
4995752--4995811
30
2.0
30
87
6
86
28
26
8
36
1.85
4997962--4997991
13
2.3
13
94
0
51
30
20
6
43
1.77
5005404--5005804
198
2.0
198
96
1
730
40
12
21
24
1.88
5012368--5012496
46
2.8
46
96
0
231
29
28
21
20
1.98
5012373--5012515
46
3.1
45
88
4
146
28
28
21
20
1.98
5022523--5022567
22
2.0
22
100
0
90
26
22
8
42
1.83
5032740--5032845
53
2.0
53
96
0
194
29
27
16
27
1.97
5039737--5039871
53
2.5
53
86
2
191
28
26
17
27
1.97
5042656--5042695
2
20.0
2
94
0
71
50
2
0
47
1.14
5045657--5045697
21
2.0
21
90
0
64
29
21
29
19
1.98
5050914--5050948
7
4.9
7
96
3
61
25
2
0
71
1.00
5051069--5051141
25
2.9
25
79
6
67
58
4
1
35
1.25
5059235--5059268
2
17.0
2
100
0
68
50
0
0
50
1.00
5062183--5062358
46
3.8
46
78
12
198
20
21
29
28
1.98
5062180--5062350
93
1.8
93
92
0
288
20
21
29
28
1.98
5065218--5065245
2
14.0
2
100
0
56
50
0
0
50
1.00
5065284--5065326
18
2.3
18
84
11
52
65
6
2
25
1.30
5065482--5065524
22
2.0
21
86
9
59
65
0
0
34
0.93
5066568--5066651
28
3.0
29
89
5
127
46
29
3
20
1.67
5066554--5066651
28
3.8
23
79
16
72
46
31
4
17
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5075070--5075113
17
2.7
17
82
6
56
40
0
2
56
1.11
5075928--5075961
6
5.7
6
100
0
68
14
0
0
85
0.60
5076826--5076864
19
1.9
19
85
10
51
25
0
10
64
1.25
5079509--5079555
24
2.0
24
83
8
60
61
4
2
31
1.27
5085593--5085635
2
21.5
2
80
0
50
0
58
0
41
0.98
5085594--5085634
6
6.8
6
97
0
64
0
60
0
39
0.96
5101231--5101324
47
2.0
47
100
0
188
34
12
12
40
1.82
5104594--5104729
67
2.0
67
100
0
272
27
8
24
38
1.85
5119181--5119223
22
2.0
22
100
0
86
46
6
9
37
1.63
5124668--5124712
15
3.0
14
78
15
54
35
0
2
62
1.08
5126605--5126795
18
10.6
18
79
8
165
35
10
14
39
1.81
5126802--5126875
36
2.1
36
84
0
94
37
8
14
39
1.76
5126827--5126875
18
2.7
18
77
0
62
38
6
12
42
1.67
5128414--5128447
16
2.2
15
89
5
50
61
11
11
14
1.56
5128716--5128742
8
3.4
8
100
0
54
51
25
11
11
1.70
5137992--5138038
24
2.0
23
84
12
60
46
4
0
48
1.21
5150829--5150953
61
2.0
61
87
3
180
55
8
1
35
1.39
5155725--5155886
77
2.1
77
96
0
297
19
17
22
40
1.92
5156805--5156863
31
1.9
31
92
0
100
25
20
22
32
1.98
5159742--5159818
18
4.3
18
81
0
82
31
22
15
31
1.95
5168405--5168566
81
2.0
81
97
0
306
38
12
22
25
1.90
5190790--5190891
18
5.9
17
69
27
56
47
0
2
49
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5190831--5190895
33
2.0
33
84
6
87
50
0
3
46
1.17
5192130--5192154
12
2.1
12
100
0
50
16
24
20
40
1.91
5192132--5192238
45
2.4
45
85
3
153
21
20
18
39
1.93
5192222--5192256
18
1.9
18
88
0
52
17
25
17
40
1.90
5194007--5194040
16
2.1
16
100
0
68
29
5
17
47
1.71
5195966--5196001
3
12.3
3
94
5
65
69
0
0
30
0.89
5200767--5200825
21
2.8
22
85
7
70
23
0
6
69
1.12
5200796--5200844
26
2.0
24
88
8
71
32
0
4
63
1.13
5200799--5200856
25
2.3
26
82
5
75
29
0
3
67
1.07
5201140--5201184
24
1.9
23
86
13
65
55
0
0
44
0.99
5201205--5201258
15
3.9
15
69
18
53
51
0
0
48
1.00
5203230--5203311
34
2.4
33
80
13
96
34
24
1
40
1.63
5203230--5203311
17
4.8
17
78
10
87
34
24
1
40
1.63
5204471--5204496
2
13.0
2
100
0
52
50
0
0
50
1.00
5204506--5204567
3
21.3
3
75
18
60
58
1
0
40
1.08
5204506--5204567
8
7.5
8
77
22
58
58
1
0
40
1.08
5204506--5204567
10
5.4
11
77
21
56
58
1
0
40
1.08
5204533--5204567
5
7.0
5
87
12
54
60
0
0
40
0.97
5204661--5204699
12
3.2
12
82
10
53
58
0
0
41
0.98
5204658--5204714
24
2.4
23
77
13
62
54
1
0
43
1.10
5204960--5205021
12
5.3
12
72
12
58
61
3
0
35
1.12
5206335--5206380
23
2.0
23
84
12
60
45
10
6
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5206342--5206386
23
2.0
23
82
8
56
40
13
8
37
1.76
5214321--5214454
53
2.5
53
91
2
207
26
17
27
28
1.98
5221834--5221984
53
2.8
53
89
4
214
25
16
27
29
1.97
5227297--5227349
5
10.0
5
80
11
61
41
0
1
56
1.10
5227294--5227350
8
6.6
9
74
22
59
43
0
1
54
1.10
5227295--5227350
12
4.5
12
81
16
69
42
0
1
55
1.10
5228666--5228704
18
2.1
19
90
4
62
41
0
10
48
1.37
5228944--5229078
39
3.4
39
74
6
112
23
20
28
28
1.99
5230641--5230754
51
2.2
51
92
0
183
29
22
13
34
1.92
5233246--5233389
77
1.9
76
88
4
218
26
20
7
45
1.78
5237714--5237949
121
2.0
121
97
0
445
30
18
21
30
1.97
5245864--5245910
3
15.7
3
100
0
94
68
0
0
31
0.90
5256507--5256534
12
2.3
12
100
0
56
17
0
35
46
1.49
5258302--5258343
20
2.1
20
100
0
84
38
9
19
33
1.84
5270988--5271017
15
1.9
16
93
6
53
63
0
3
33
1.11
5295258--5295309
15
3.2
15
73
19
50
46
0
1
51
1.12
5295271--5295307
19
1.9
19
88
0
56
51
0
2
45
1.15
5295348--5295377
16
1.9
16
93
6
53
40
0
0
60
0.97
5295571--5295607
19
1.9
19
88
0
56
45
13
0
40
1.43
5300307--5300346
4
9.8
4
89
5
62
50
20
2
27
1.61
5304973--5304998
13
2.0
13
100
0
52
53
15
15
15
1.73
5306546--5306579
16
2.1
15
89
10
50
29
2
0
67
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5306964--5306992
7
4.1
7
100
0
58
58
0
27
13
1.36
5321898--5321936
9
4.2
9
83
6
51
76
2
10
10
1.10
5321958--5321984
14
1.9
14
100
0
54
81
0
14
3
0.82
5322646--5322694
17
2.8
17
81
12
55
42
0
18
38
1.50
5324648--5324696
3
16.3
3
95
0
80
28
0
4
67
1.09
5327200--5327249
26
2.0
26
84
4
66
38
2
6
54
1.37
5332416--5332449
16
2.1
16
94
0
59
23
8
26
41
1.83
5340809--5341012
46
4.5
45
81
11
188
23
30
20
25
1.98
5340852--5341068
92
2.4
91
82
4
249
22
31
19
26
1.98
5340852--5341060
46
4.6
44
79
11
181
22
31
19
27
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335