genome.fa.s5.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  148  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43443613--43443824	43	5.0	42	76	6	167	33	25	15	26	1.95
43448969--43448993	2	12.5	2	100	0	50	48	0	0	52	1.00
43449548--43449592	21	2.1	21	87	0	63	53	13	2	31	1.52
43454329--43454385	2	28.5	2	96	0	105	1	0	47	50	1.11
43455098--43455146	2	24.5	2	100	0	98	51	48	0	0	1.00
43466821--43466974	77	2.0	77	85	2	211	29	7	7	55	1.57
43466837--43466992	77	2.0	77	80	2	170	35	7	7	50	1.57
43480993--43481032	19	2.1	19	100	0	80	15	20	10	55	1.68
43491075--43491108	11	3.0	12	87	12	54	35	8	14	41	1.77
43501064--43501098	15	2.3	15	95	0	61	57	0	42	0	0.99
43503043--43503087	20	2.3	20	85	11	58	80	0	17	2	0.82
43505018--43505201	101	1.8	99	83	2	242	28	26	19	25	1.99
43511066--43511170	51	2.1	51	98	0	201	25	22	12	39	1.89
43513347--43513384	17	2.2	18	90	4	60	34	5	2	57	1.35
43513859--43513897	19	2.1	19	85	4	53	58	7	7	25	1.52
43516997--43517074	33	2.4	33	76	8	86	30	17	24	26	1.97
43518923--43518968	17	2.6	17	89	3	65	67	10	0	21	1.21
43523095--43523131	2	18.5	2	88	0	56	43	0	5	51	1.24
43535826--43536849	163	6.3	158	77	13	840	29	16	20	33	1.94
43536160--43536521	75	4.8	73	86	6	437	29	16	23	30	1.96
43536601--43536634	15	2.2	16	89	5	52	20	8	5	64	1.43
43536689--43536716	14	2.0	14	100	0	56	14	14	7	64	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43536436--43536849	88	4.6	89	85	5	523	29	15	19	35	1.92
43537022--43537052	14	2.2	14	94	0	53	16	6	6	70	1.29
43536813--43537113	159	1.9	156	82	8	376	23	17	23	35	1.95
43538269--43538368	34	2.8	36	88	11	154	75	15	6	4	1.15
43538306--43538378	35	2.1	34	87	7	101	73	16	5	4	1.17
43541053--43541098	10	4.5	10	88	2	65	39	4	6	50	1.48
43543190--43543224	6	5.8	6	100	0	70	51	14	0	34	1.42
43543666--43543717	26	2.0	26	96	0	95	28	11	17	42	1.84
43546377--43546450	38	1.9	38	86	5	105	45	13	13	27	1.81
43551769--43551813	19	2.2	20	84	7	56	44	0	6	48	1.29
43552867--43552933	31	2.2	31	91	0	116	46	4	8	40	1.56
43554477--43554528	3	17.3	3	91	0	86	34	1	0	63	1.06
43555532--43555571	13	3.1	13	92	0	62	20	32	32	15	1.93
43559088--43559254	39	4.3	39	94	0	271	25	31	19	23	1.98
43567126--43567245	39	3.1	39	90	1	177	25	30	20	23	1.99
43571191--43571234	5	8.6	5	85	14	63	20	0	0	79	0.73
43571191--43571234	9	4.3	10	86	13	63	20	0	0	79	0.73
43571185--43571239	26	2.1	26	86	6	76	18	1	0	80	0.81
43573122--43573148	13	2.1	13	100	0	54	14	33	37	14	1.88
43580990--43581039	25	2.0	25	96	0	91	36	18	24	22	1.95
43582726--43582833	44	2.4	44	87	3	144	29	23	13	33	1.93
43588785--43588892	44	2.4	44	87	3	144	29	23	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43595711--43596495	44	17.5	45	70	8	278	32	17	19	29	1.95
43595727--43596242	133	3.8	133	80	2	487	33	16	19	29	1.94
43598210--43598235	3	8.7	3	100	0	52	34	0	0	65	0.93
43598347--43598401	3	18.3	3	81	7	67	32	3	1	61	1.24
43600135--43600187	23	2.3	22	78	18	54	0	26	3	69	1.05
43602138--43602186	25	2.0	25	91	0	80	34	10	18	36	1.85
43609640--43609732	45	2.0	46	85	2	125	47	15	6	31	1.70
43610320--43610348	3	9.7	3	100	0	58	0	34	0	65	0.93
43617930--43617996	31	2.2	31	91	2	109	43	10	10	35	1.73
43621920--43621945	13	2.0	13	100	0	52	69	7	7	15	1.35
43622151--43622194	19	2.3	20	84	7	56	18	2	0	79	0.83
43622147--43622210	29	2.2	28	84	13	78	23	3	0	73	0.97
43625297--43625390	45	2.1	45	84	4	118	43	10	18	27	1.83
43625475--43625541	34	2.0	34	82	5	82	50	13	8	26	1.71
43629145--43629183	17	2.4	16	83	8	51	25	7	2	64	1.33
43629695--43630227	132	4.0	131	75	4	433	29	18	17	34	1.94
43633709--43634088	48	7.6	48	80	10	325	37	8	24	29	1.84
43633794--43633828	13	2.7	13	90	0	52	40	0	20	40	1.52
43633746--43633874	61	2.1	61	95	0	231	38	6	23	31	1.81
43633807--43634107	48	6.3	48	95	0	496	37	7	24	29	1.84
43634248--43634318	37	1.9	37	94	0	124	22	19	32	25	1.98
43635534--43635808	40	6.9	40	91	1	428	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43635704--43635769	23	3.1	23	59	24	54	24	24	27	24	2.00
43639387--43639772	48	8.0	48	94	0	664	36	6	25	30	1.83
43639913--43639983	37	1.9	37	91	0	115	22	18	33	25	1.96
43640737--43640847	50	2.2	50	85	0	141	24	26	34	15	1.95
43650177--43650210	17	2.0	17	100	0	68	58	11	17	11	1.62
43655889--43655989	48	2.1	49	96	1	186	46	3	15	33	1.65
43657444--43657616	92	1.9	92	85	2	240	31	21	22	24	1.98
43659633--43659806	92	1.9	91	84	3	233	38	19	8	33	1.82
43659827--43659932	39	2.8	39	77	8	110	55	0	3	40	1.18
43659831--43659932	19	5.3	19	77	9	91	56	0	2	40	1.14
43660430--43660467	20	1.9	20	88	0	58	34	2	10	52	1.50
43662078--43662146	28	2.5	28	95	2	122	43	27	10	18	1.82
43666862--43666899	20	1.9	20	88	0	58	34	2	10	52	1.50
43668516--43668584	28	2.5	28	95	2	122	43	27	10	18	1.82
43670959--43671089	38	3.3	39	87	8	142	41	15	13	29	1.85
43670983--43671090	38	2.8	38	91	2	173	38	14	13	32	1.86
43672762--43672796	18	1.9	18	94	0	61	20	0	25	54	1.45
43673431--43673469	17	2.4	16	82	4	51	56	0	2	41	1.13
43673524--43673549	2	13.0	2	100	0	52	50	0	0	50	1.00
43673985--43674027	22	2.0	22	81	9	52	34	2	6	55	1.39
43674937--43674965	3	9.7	3	100	0	58	31	0	0	68	0.89
43675262--43675305	21	2.0	22	82	8	54	34	6	11	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43677733--43677775	21	2.0	21	86	8	61	37	6	0	55	1.27
43679388--43679429	20	2.1	20	86	8	59	42	7	7	42	1.59
43682141--43682174	16	2.1	17	94	5	61	35	0	0	64	0.94
43682570--43682607	2	19.0	2	100	0	76	50	0	0	50	1.00
43689191--43689298	26	4.2	26	93	0	189	32	7	24	36	1.83
43694115--43694156	17	2.4	18	88	11	61	45	0	0	54	0.99
43694115--43694157	14	2.9	14	86	10	50	46	0	0	53	1.00
43696298--43696373	22	3.7	21	76	15	68	40	17	6	35	1.75
43696327--43696424	35	2.7	37	87	12	150	35	16	10	37	1.82
43696334--43696424	19	4.9	19	92	8	161	36	15	10	37	1.83
43696544--43696582	21	1.9	20	84	5	51	10	2	15	71	1.23
43696788--43696929	45	3.2	45	89	2	232	23	30	15	30	1.95
43698411--43698571	29	5.6	29	85	1	198	26	32	15	25	1.96
43700291--43700806	78	6.5	78	89	5	757	24	24	18	32	1.97
43700291--43700744	244	1.9	244	95	0	820	24	24	18	32	1.97
43706756--43706786	2	16.0	2	93	6	55	51	0	0	48	1.00
43712646--43712670	13	1.9	13	100	0	50	56	20	8	16	1.65
43713372--43713405	17	2.1	17	88	5	52	70	0	0	29	0.87
43713658--43713733	22	3.7	21	76	15	68	40	17	6	35	1.75
43713687--43713784	35	2.7	37	87	12	150	35	16	10	37	1.82
43713694--43713784	19	4.9	19	92	8	161	36	15	10	37	1.83
43713903--43713942	21	2.0	20	85	5	53	10	2	15	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43718936--43719142	49	4.2	49	97	0	389	34	7	26	31	1.85
43719223--43719295	37	2.0	37	97	0	137	23	20	31	24	1.98
43721180--43721490	40	7.8	40	93	0	471	27	20	25	26	1.99
43721180--43721490	119	2.6	120	91	0	516	27	20	25	26	1.99
43724999--43725207	49	4.2	49	94	3	366	33	7	26	31	1.85
43725001--43725207	100	2.1	99	94	3	373	33	7	26	31	1.85
43725141--43725234	44	2.2	42	77	5	107	35	7	26	30	1.84
43725274--43725360	37	2.3	36	92	5	138	20	17	33	28	1.95
43727790--43727845	23	2.4	24	79	8	71	16	16	28	39	1.89
43728626--43728676	25	2.0	25	88	0	75	47	11	21	19	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335