genome.fa.s5.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  159  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46725990--46726198	27	7.8	27	88	1	251	37	5	24	31	1.79
46726005--46726198	107	1.8	107	87	2	291	38	6	25	29	1.80
46726204--46726292	27	3.3	27	79	4	92	33	7	16	41	1.78
46728592--46728683	42	2.2	42	90	0	139	34	20	14	30	1.92
46728829--46728923	25	3.7	26	88	1	140	26	22	25	26	2.00
46728816--46728923	51	2.1	49	88	8	155	25	22	23	28	1.99
46728816--46728923	25	4.3	25	82	8	114	25	22	23	28	1.99
46729591--46729640	23	2.1	24	81	3	57	38	0	24	38	1.56
46730866--46730986	60	2.0	60	98	0	233	25	7	19	47	1.76
46731849--46731959	42	2.6	42	85	5	145	30	23	14	31	1.94
46732097--46732223	64	2.0	64	93	0	218	42	14	15	26	1.86
46751573--46751611	16	2.4	16	84	12	53	0	28	0	71	0.86
46752494--46752820	163	2.0	163	89	3	498	31	9	18	40	1.83
46755433--46755581	80	1.9	80	81	2	183	22	30	24	22	1.99
46755474--46755581	40	2.7	38	85	8	128	21	29	25	23	1.99
46758505--46758532	3	9.3	3	100	0	56	67	0	0	32	0.91
46762058--46762193	67	2.0	67	92	0	227	21	17	25	35	1.95
46762537--46762579	15	2.9	15	86	6	61	58	6	2	32	1.38
46766913--46767080	40	4.2	40	82	1	185	24	26	22	26	2.00
46774922--46775088	40	4.2	40	81	3	176	24	26	22	26	2.00
46777381--46777463	29	2.9	29	100	0	166	30	14	28	26	1.95
46777377--46777512	59	2.3	58	82	5	159	27	15	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46784060--46784115	19	2.9	19	79	10	69	80	1	12	5	0.96
46785272--46785365	29	3.2	29	96	0	170	30	15	27	25	1.96
46785268--46785402	58	2.3	58	83	3	166	27	15	31	25	1.96
46788027--46788182	43	3.7	42	77	8	138	28	20	25	26	1.99
46788027--46788182	85	1.8	85	81	2	197	28	20	25	26	1.99
46788935--46788977	19	2.3	19	95	0	77	11	20	37	30	1.89
46791195--46791252	29	2.0	29	90	6	91	32	37	3	25	1.73
46802365--46803073	345	2.1	345	87	2	1021	34	11	25	28	1.91
46804931--46804996	19	3.5	19	78	14	57	1	24	3	71	1.09
46807856--46807959	45	2.3	45	81	6	113	25	22	12	40	1.88
46807892--46808017	45	2.8	46	78	3	148	26	19	10	43	1.83
46814576--46814751	46	3.8	45	81	10	212	21	21	29	28	1.98
46814573--46814743	93	1.8	93	94	0	306	21	21	29	27	1.98
46829728--46829794	30	2.2	30	84	10	84	25	5	20	47	1.73
46834255--46834287	13	2.3	15	90	10	52	54	0	3	42	1.15
46839745--46839927	79	2.3	81	83	7	223	26	26	22	24	2.00
46839724--46839927	40	5.1	40	81	8	229	25	26	22	25	2.00
46844148--46844343	98	2.0	98	97	2	376	48	6	8	37	1.58
46844934--46844966	17	1.9	17	93	0	57	57	15	12	15	1.65
46848482--46848665	67	2.8	64	77	8	194	29	17	30	22	1.96
46849740--46849778	2	20.0	2	94	5	71	51	0	0	48	1.00
46851381--46851567	40	4.7	40	91	5	292	27	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46857352--46857481	40	3.3	39	83	4	163	23	28	25	23	1.99
46864879--46864918	21	2.0	21	90	5	64	12	40	27	20	1.88
46871686--46871830	71	2.0	71	98	0	281	26	19	25	28	1.99
46878530--46878633	51	2.0	51	84	0	136	37	18	9	34	1.83
46879586--46879662	29	2.7	28	78	11	84	33	20	12	32	1.91
46880761--46880792	15	2.1	16	94	5	57	37	9	0	53	1.34
46880750--46880789	20	2.0	20	90	4	64	40	10	0	50	1.36
46884098--46884124	12	2.2	12	100	0	54	48	0	7	44	1.31
46886697--46886837	25	5.8	24	81	9	137	25	22	21	30	1.99
46886730--46886837	46	2.3	47	85	7	139	25	22	22	30	1.99
46886705--46886837	70	1.9	71	82	4	171	26	21	21	30	1.99
46891955--46892161	40	5.2	39	80	5	173	25	24	25	24	2.00
46891957--46892161	80	2.6	80	82	3	218	25	24	25	24	2.00
46896784--46896990	40	5.2	39	79	9	186	25	23	26	24	2.00
46896825--46896990	80	2.1	80	85	4	219	24	24	27	23	2.00
46904800--46905004	80	2.6	80	82	3	227	25	23	26	24	2.00
46904798--46905004	40	5.2	40	80	4	188	25	23	26	24	2.00
46910603--46910643	18	2.3	18	82	0	55	24	29	2	43	1.67
46914695--46914961	24	11.1	24	93	0	444	19	17	25	36	1.94
46932197--46932381	40	4.7	40	91	1	273	25	27	24	23	2.00
46932197--46932381	79	2.3	80	89	0	273	25	27	24	23	2.00
46932197--46932416	40	5.5	39	82	8	241	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46935789--46935823	5	7.0	5	96	0	61	40	17	20	22	1.92
46936043--46936091	18	2.7	18	83	0	62	20	16	16	46	1.83
46942146--46942184	2	19.5	2	100	0	78	48	0	0	51	1.00
46942566--46942628	32	2.0	32	100	0	126	30	22	3	44	1.68
46955768--46955933	40	4.2	40	79	7	171	26	22	26	24	2.00
46963652--46963745	29	3.2	29	96	0	170	30	15	27	25	1.96
46963648--46963782	58	2.3	58	83	3	166	27	15	31	25	1.96
46972419--46972568	40	3.8	39	80	9	144	22	27	24	26	2.00
46975214--46975343	59	2.3	56	82	6	145	24	32	16	26	1.96
46975263--46975345	27	3.0	28	94	5	150	26	28	14	30	1.95
46976504--46976559	20	3.0	19	80	10	62	5	12	1	80	0.96
46983105--46983236	59	2.3	58	84	4	158	25	31	15	27	1.96
46983154--46983236	29	2.9	29	100	0	166	26	28	14	30	1.95
46984395--46984450	20	3.0	19	80	10	62	5	12	1	80	0.96
46992729--46992762	14	2.3	15	90	5	52	41	0	2	55	1.15
46998183--46998407	40	5.6	40	80	5	231	26	24	26	23	2.00
46998183--46998443	80	3.3	80	82	3	294	26	23	25	24	2.00
46998183--46998443	120	2.2	119	81	6	296	26	23	25	24	2.00
47007851--47007919	36	1.9	36	88	5	104	21	18	17	42	1.90
47015009--47015132	55	2.3	55	84	1	151	30	28	21	19	1.98
47018709--47018928	40	5.6	40	79	6	207	26	26	22	25	2.00
47018709--47018928	80	2.8	78	83	5	246	26	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47026825--47027043	40	5.6	40	82	4	250	25	26	22	24	2.00
47032081--47032146	32	2.1	32	94	0	114	39	22	4	33	1.75
47034250--47034340	19	4.9	19	89	8	152	37	15	10	36	1.83
47034243--47034340	35	2.7	37	86	12	141	36	16	10	36	1.82
47034691--47035009	45	7.1	45	81	5	322	26	28	14	30	1.95
47034708--47034918	89	2.4	90	85	0	280	27	29	12	29	1.93
47034949--47035243	78	3.8	78	90	2	468	25	24	19	31	1.98
47035925--47035991	33	2.0	33	100	0	134	28	23	8	38	1.85
47037223--47037619	40	9.8	40	84	4	535	23	20	28	26	1.99
47037213--47037621	82	5.0	82	91	1	644	24	20	28	27	1.99
47041223--47041703	48	10.0	48	95	0	836	35	6	27	29	1.83
47041845--47041953	37	2.9	37	89	2	157	23	17	30	28	1.97
47050174--47050208	18	2.0	18	88	5	54	68	0	0	31	0.90
47050476--47050519	22	2.0	22	86	4	61	38	18	6	36	1.77
47050498--47050623	35	3.5	36	86	7	175	37	13	11	38	1.80
47050498--47050623	54	2.3	54	95	0	234	37	13	11	38	1.80
47050498--47050623	19	6.9	19	86	10	192	37	13	11	38	1.80
47050744--47050778	18	1.9	18	88	0	52	11	2	14	71	1.25
47055982--47056039	26	2.2	26	87	0	80	32	20	17	29	1.95
47059326--47059526	40	5.1	40	88	6	293	24	21	28	25	1.99
47061203--47061257	19	3.0	17	81	10	56	41	0	14	43	1.45
47063360--47063432	29	2.5	29	90	0	92	24	31	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47064601--47064661	27	2.1	30	82	14	76	6	16	1	75	1.09
47071260--47071332	29	2.5	29	90	0	92	24	31	16	27	1.96
47075467--47075536	27	2.6	27	95	2	122	30	27	14	28	1.95
47079193--47079243	20	2.5	20	90	0	75	31	23	13	31	1.93
47080325--47080381	30	1.9	30	89	7	89	43	8	19	28	1.80
47085717--47085800	20	4.4	19	73	23	70	33	5	1	59	1.29
47085722--47085771	16	2.8	17	85	11	57	36	8	0	56	1.29
47094020--47094144	42	3.0	42	81	5	144	36	26	13	23	1.92
47096445--47096502	30	1.9	30	85	0	80	39	6	24	29	1.81
47103837--47103895	30	2.0	30	86	0	82	38	8	25	27	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335