genome.fa.s5.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  168  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49670484--49670520	14	2.6	15	83	12	51	75	0	5	18	0.99
49685190--49685339	29	5.2	29	91	0	221	24	14	31	30	1.94
49696903--49697096	40	4.8	38	80	11	178	25	27	21	24	1.99
49696892--49697098	79	2.6	80	79	9	235	26	27	21	25	2.00
49701494--49701519	13	2.0	13	100	0	52	15	30	30	23	1.95
49702822--49702946	29	4.3	29	86	1	171	27	12	30	29	1.93
49712787--49712889	27	3.8	27	71	5	91	36	24	7	31	1.84
49712875--49713040	27	6.2	27	88	2	221	36	15	20	27	1.92
49712875--49713040	53	3.1	54	85	3	228	36	15	20	27	1.92
49713183--49713213	16	1.9	16	93	0	53	29	19	16	35	1.93
49713404--49713444	20	2.0	20	95	0	73	12	14	31	41	1.83
49713659--49713723	25	2.6	25	80	0	76	21	21	10	46	1.82
49713719--49713752	18	1.9	17	88	5	50	17	11	17	52	1.73
49716936--49717009	29	2.6	29	89	4	105	25	28	17	28	1.98
49718310--49718348	19	2.0	21	85	10	55	10	23	0	66	1.22
49728307--49728344	20	2.1	19	85	14	53	44	13	5	36	1.66
49736440--49736606	40	4.2	40	79	6	169	26	22	26	24	2.00
49744437--49744603	40	4.2	40	79	6	169	26	22	26	24	2.00
49747372--49747416	21	2.1	21	100	0	90	48	28	4	17	1.66
49770093--49770194	28	3.5	29	81	6	109	28	27	14	29	1.95
49771918--49771956	17	2.3	17	95	0	69	35	33	0	30	1.58
49771913--49771958	17	2.4	21	68	27	55	36	32	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49786816--49786871	27	2.1	27	82	0	67	30	19	30	19	1.97
49786816--49786890	25	2.8	26	76	9	64	32	20	26	21	1.97
49788262--49788428	40	4.2	40	85	2	194	27	25	22	25	2.00
49788965--49789083	57	2.1	57	98	0	229	35	24	4	36	1.75
49799996--49800668	48	14.0	48	93	0	1123	36	6	25	31	1.81
49800809--49800948	37	3.8	37	88	3	219	24	19	31	25	1.98
49802224--49802625	40	10.1	40	89	0	590	25	21	27	25	2.00
49802222--49802625	159	2.5	160	88	0	621	25	21	27	25	1.99
49802787--49802837	25	2.0	25	81	7	59	33	13	31	21	1.92
49806612--49807335	48	15.0	48	93	0	1196	37	6	25	31	1.81
49807522--49807668	40	3.7	40	90	0	222	25	24	23	26	2.00
49808325--49808443	57	2.1	57	98	0	229	35	24	4	36	1.75
49809505--49809670	25	6.6	25	74	2	138	36	18	27	18	1.94
49809529--49809665	50	2.7	50	88	2	204	35	18	27	18	1.95
49817587--49817649	32	2.0	32	100	0	126	41	6	20	31	1.77
49819432--49819473	2	22.0	2	90	9	70	50	0	0	50	1.00
49822023--49822123	28	3.5	30	82	6	118	29	14	26	28	1.95
49830003--49830103	28	3.5	30	82	6	118	29	14	26	28	1.95
49837988--49838088	28	3.5	30	82	6	118	29	14	26	28	1.95
49841639--49842462	422	2.0	423	91	0	1355	35	15	16	32	1.90
49844067--49844131	27	2.4	27	84	0	85	27	23	10	38	1.88
49858933--49858971	15	2.6	14	84	15	51	79	2	17	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49858937--49858985	26	1.9	25	84	12	64	79	4	14	2	0.97
49859058--49859082	12	2.1	12	100	0	50	76	0	16	8	1.02
49859118--49859156	18	2.1	19	85	4	53	66	2	23	7	1.30
49860680--49860729	25	2.0	25	100	0	100	24	28	20	28	1.99
49860750--49860835	30	2.9	30	77	5	86	27	22	17	32	1.96
49867543--49867609	35	1.9	35	100	0	134	28	13	31	26	1.94
49874319--49874391	37	2.0	37	88	0	110	47	12	19	20	1.81
49874688--49874743	23	2.5	23	80	11	71	55	7	0	37	1.27
49878131--49878185	15	3.8	15	73	21	55	43	1	0	54	1.10
49878585--49878623	18	2.2	18	86	9	53	61	12	0	25	1.31
49878632--49878700	22	3.2	22	74	17	81	50	7	4	37	1.50
49878625--49878709	43	2.0	43	97	0	161	54	5	3	36	1.42
49879473--49879532	17	3.6	16	73	10	57	61	5	5	28	1.38
49879602--49879646	19	2.3	20	85	7	58	64	4	0	31	1.13
49879674--49879717	20	2.3	19	84	4	52	63	0	2	34	1.07
49879783--49879821	21	1.9	20	84	5	51	28	5	2	64	1.28
49879814--49879870	30	1.9	30	89	7	89	40	0	1	57	1.09
49879976--49880024	20	2.5	20	87	6	66	30	0	2	67	1.02
49880128--49880219	29	3.1	30	73	14	93	57	15	0	27	1.38
49880507--49880552	17	2.5	17	86	10	56	80	6	4	8	1.01
49880631--49880665	12	2.7	13	91	8	54	65	0	0	34	0.93
49880722--49881177	212	2.2	211	92	4	758	40	9	5	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49881259--49881302	17	2.4	19	88	7	65	6	9	6	77	1.13
49881731--49881779	17	2.9	17	79	14	57	44	0	2	53	1.12
49886302--49886555	85	3.0	84	90	2	395	43	12	18	25	1.85
49888296--49888331	17	2.1	18	89	5	56	38	22	27	11	1.88
49890122--49890195	20	3.7	20	74	15	62	27	21	14	36	1.93
49891309--49891357	20	2.5	20	89	0	80	46	0	14	38	1.44
49907086--49907147	21	3.0	21	75	0	61	20	22	17	38	1.93
49912947--49912987	20	2.0	20	100	0	82	34	4	17	43	1.70
49919715--49919748	13	2.4	14	85	14	52	17	14	8	58	1.61
49923806--49923863	3	19.7	3	92	3	100	31	1	0	67	1.01
49924303--49924349	3	15.7	3	95	0	85	29	0	2	68	1.02
49928660--49928705	23	2.0	23	100	0	92	26	21	17	34	1.95
49929466--49929490	13	1.9	13	100	0	50	88	0	12	0	0.53
49929976--49930079	53	2.0	53	90	0	163	21	15	7	55	1.64
49930482--49930580	46	2.2	46	83	3	128	35	13	25	26	1.92
49931797--49931841	24	1.9	23	82	13	56	8	11	2	77	1.07
49933711--49933852	40	3.5	40	83	1	124	27	23	26	22	1.99
49933750--49933878	40	3.2	39	84	6	152	24	22	27	25	2.00
49944160--49944249	47	1.9	46	90	2	144	38	3	1	56	1.23
49944216--49944287	32	2.3	31	83	11	85	44	1	0	54	1.08
49944214--49944287	30	2.4	31	77	4	78	45	1	0	52	1.09
49944307--49944357	25	2.0	25	81	7	59	45	7	5	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49945578--49945628	2	25.0	2	84	4	66	49	1	3	45	1.32
49950884--49950953	27	2.5	28	90	2	106	28	14	27	30	1.95
49958339--49958408	27	2.5	28	88	6	99	28	14	28	28	1.95
49964146--49964196	17	2.9	17	85	2	57	7	21	0	70	1.12
49967031--49967061	14	2.2	14	94	0	53	9	22	0	67	1.19
49967067--49967268	108	1.9	108	87	5	304	27	28	1	42	1.66
49967053--49967347	102	2.8	106	80	9	263	26	27	2	43	1.67
49980526--49980701	46	3.8	46	81	10	232	20	21	29	28	1.98
49980522--49980693	93	1.8	93	96	0	317	20	22	30	27	1.98
49982786--49982819	18	1.9	18	94	5	61	64	0	0	35	0.94
49983923--49983950	5	5.6	5	100	0	56	82	0	0	17	0.68
49996483--49996553	22	3.4	21	77	11	74	32	2	18	46	1.63
50004817--50004875	27	2.3	25	77	11	66	20	23	18	37	1.94
50018743--50018774	2	16.0	2	100	0	64	50	0	0	50	1.00
50024781--50024807	1	27.0	1	100	0	54	100	0	0	0	0.00
50029136--50029168	16	2.1	16	100	0	66	27	24	18	30	1.98
50048850--50048938	46	1.9	46	83	0	115	23	30	11	34	1.90
50048955--50049076	23	5.3	22	63	30	58	25	30	12	31	1.92
50048946--50049289	47	7.3	47	91	0	544	26	29	10	32	1.90
50049002--50049123	23	5.3	22	62	30	58	25	31	13	30	1.93
50050948--50050975	2	14.0	2	100	0	56	50	0	0	50	1.00
50056734--50056788	27	2.0	27	100	0	110	34	3	10	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50057022--50057256	123	1.9	123	92	0	398	39	11	21	28	1.87
50063881--50063998	56	2.1	56	98	0	227	39	12	15	32	1.85
50064223--50064261	16	2.5	15	84	12	51	38	23	2	35	1.68
50064374--50064561	55	3.5	53	84	6	218	22	25	17	35	1.95
50064549--50064670	47	2.6	47	96	0	217	24	24	14	36	1.93
50064765--50064848	44	1.9	44	80	4	98	26	23	11	38	1.90
50065388--50065475	30	2.9	30	91	1	131	30	23	7	37	1.84
50067547--50067648	48	2.1	48	84	12	131	27	34	17	20	1.95
50071853--50071912	23	2.7	21	76	16	59	63	5	1	30	1.25
50071940--50072013	24	3.0	24	79	16	80	68	1	5	24	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335