genome.fa.s5.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  181  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54326910--54326947	19	2.0	19	85	10	51	21	39	23	15	1.92
54329714--54329782	30	2.3	30	94	0	129	20	21	34	23	1.96
54330486--54330649	42	3.9	42	77	1	166	31	22	15	31	1.95
54333010--54333052	16	2.7	16	92	0	68	58	23	13	4	1.55
54333263--54333381	29	4.2	29	74	6	109	31	13	28	26	1.94
54351351--54351416	6	11.5	6	85	3	75	15	3	3	78	0.99
54351348--54351436	5	16.8	5	75	20	67	16	3	2	77	1.01
54351348--54351406	27	2.2	27	88	8	93	15	1	1	81	0.86
54351351--54351436	12	7.4	11	74	20	77	17	3	2	76	1.03
54353864--54353903	20	2.0	20	100	0	80	20	5	20	55	1.62
54354340--54354372	13	2.6	13	90	4	50	39	0	12	48	1.40
54355985--54356036	25	2.1	25	86	13	72	23	23	5	48	1.72
54357590--54357648	31	1.9	31	89	0	91	25	23	15	35	1.94
54357842--54357987	25	6.0	24	92	5	215	28	22	20	28	1.99
54358036--54358102	20	3.3	20	93	0	116	32	20	11	34	1.90
54358036--54358091	11	5.5	11	71	16	57	32	19	12	35	1.89
54364613--54364643	16	1.9	16	100	0	62	38	3	25	32	1.72
54370517--54370698	49	3.7	49	79	4	213	34	24	15	24	1.95
54370505--54370703	100	2.0	100	90	2	310	34	24	16	24	1.95
54373178--54373248	24	2.9	25	87	8	85	32	19	22	25	1.98
54373192--54373248	24	2.3	24	93	3	96	35	15	24	24	1.95
54373200--54373257	24	2.5	23	88	5	82	34	15	22	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54373204--54373308	23	4.5	24	71	16	80	33	18	20	28	1.96
54377601--54377767	40	4.2	40	82	2	185	24	26	22	26	2.00
54385352--54385478	40	3.2	39	81	7	141	24	26	21	27	1.99
54395399--54395454	17	3.4	17	76	14	71	8	3	21	66	1.35
54395416--54395463	16	2.9	16	74	17	53	12	2	16	68	1.29
54395397--54395463	33	2.0	33	100	0	134	13	2	17	65	1.38
54399264--54399297	17	1.9	18	88	5	52	35	11	2	50	1.54
54400120--54400171	22	2.4	22	72	15	54	36	19	23	21	1.95
54400629--54401144	27	19.1	27	81	2	453	31	9	18	40	1.82
54401397--54401427	8	3.9	8	95	0	53	16	22	22	38	1.92
54406552--54406610	31	1.9	31	85	0	82	28	27	18	25	1.98
54412078--54412243	40	4.2	40	82	3	192	25	25	21	26	2.00
54412091--54412241	80	1.9	80	86	5	216	23	26	22	27	2.00
54420122--54420290	40	4.2	40	82	7	193	25	27	22	24	2.00
54420122--54420290	80	2.1	80	84	7	227	25	27	22	24	2.00
54422906--54422969	27	2.4	24	74	20	65	31	21	29	17	1.96
54430296--54430493	49	3.9	50	82	2	227	25	18	26	29	1.98
54430304--54430511	102	2.0	102	82	5	251	24	18	26	30	1.98
54442244--54442380	69	2.0	69	95	0	247	34	23	9	32	1.87
54448347--54448410	3	21.3	3	100	0	128	32	0	0	67	0.91
54451710--54451932	40	5.6	40	94	2	344	23	22	26	26	2.00
54451710--54451965	80	3.2	80	90	4	360	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54451710--54451965	40	6.4	41	90	5	309	24	22	26	26	2.00
54454114--54454284	93	1.8	93	96	0	315	28	29	21	21	1.98
54454106--54454281	46	3.8	46	80	12	225	28	28	21	21	1.98
54456644--54456731	29	3.0	29	80	8	97	56	15	17	10	1.66
54456644--54456722	15	5.4	15	77	10	83	58	13	17	10	1.63
54456655--54456731	15	5.2	15	75	9	77	55	15	16	11	1.68
54459684--54459854	93	1.8	93	96	0	315	28	29	21	21	1.98
54459676--54459851	46	3.8	46	80	12	225	28	28	21	21	1.98
54464524--54464626	29	3.6	29	81	2	118	21	16	33	29	1.95
54471498--54471600	29	3.6	29	81	2	118	21	16	33	29	1.95
54477311--54477480	40	4.2	40	84	3	225	25	24	28	21	1.99
54479749--54479800	3	17.3	3	100	0	104	32	0	0	67	0.91
54483097--54483359	40	6.6	40	92	3	390	23	21	27	27	1.99
54483139--54483204	22	3.2	22	60	24	52	22	21	27	28	1.99
54483097--54483392	40	7.4	40	90	4	342	23	21	27	27	1.99
54489010--54489111	29	3.6	29	90	4	145	26	32	14	26	1.95
54492458--54492491	16	2.0	18	88	11	54	76	0	2	20	0.92
54494560--54494621	24	2.6	23	80	12	63	38	19	22	19	1.93
54503989--54504087	50	2.0	50	85	0	135	34	28	13	24	1.93
54504349--54504449	26	3.9	27	80	5	118	33	12	14	38	1.85
54508544--54508612	27	2.6	27	75	9	77	43	17	17	21	1.88
54509032--54509129	27	3.6	28	77	8	96	29	11	19	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54509043--54509133	27	3.4	27	84	0	110	31	13	16	38	1.87
54528180--54528227	21	2.2	22	81	3	53	54	20	4	20	1.61
54529235--54529349	29	4.0	29	84	6	146	28	28	14	27	1.95
54529226--54529341	57	2.0	57	86	3	162	27	30	15	26	1.96
54529560--54529610	8	6.4	8	80	14	61	5	19	21	52	1.66
54529560--54529610	24	2.1	24	96	0	93	5	19	21	52	1.66
54530687--54530718	16	2.0	16	93	0	55	15	6	28	50	1.68
54533279--54533337	30	2.0	30	86	0	82	35	10	28	25	1.89
54536198--54536255	29	2.0	28	86	3	80	25	29	17	27	1.97
54537591--54537622	16	2.0	16	100	0	64	6	6	37	50	1.53
54538293--54538324	7	4.6	7	92	0	55	56	12	3	28	1.51
54542994--54544600	805	2.0	803	97	0	3018	40	22	9	27	1.84
54546754--54546877	43	2.9	42	81	7	169	29	12	26	32	1.92
54553282--54553321	21	2.0	20	90	5	62	22	30	37	10	1.87
54554918--54555002	34	2.5	34	80	3	91	18	25	28	27	1.98
54563864--54563919	29	1.9	29	85	0	76	21	17	19	41	1.91
54563999--54564066	28	2.4	28	80	4	75	25	22	23	29	1.99
54566606--54566706	28	3.5	29	86	6	125	29	27	13	28	1.95
54569851--54569957	29	3.8	28	74	10	92	26	31	14	28	1.94
54572491--54572639	80	1.9	80	81	2	183	22	30	24	22	1.99
54572532--54572639	40	2.7	38	85	8	128	21	29	25	23	1.99
54580592--54580740	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54580633--54580740	40	2.7	38	85	8	128	21	29	25	23	1.99
54584963--54584994	3	10.3	3	93	6	55	68	0	0	31	0.90
54585484--54585527	14	3.1	14	87	12	72	36	20	6	36	1.79
54588276--54588652	40	9.4	40	91	1	546	23	22	27	27	1.99
54594717--54594866	40	3.8	40	85	3	187	25	27	22	24	2.00
54602779--54602928	40	3.8	40	81	3	160	27	25	21	26	1.99
54607970--54608347	40	9.5	40	95	1	611	22	23	28	25	1.99
54613258--54613298	15	2.9	14	82	7	55	36	21	4	36	1.75
54614034--54614175	76	1.9	76	92	0	239	21	11	20	46	1.82
54614801--54614839	12	3.2	12	85	7	51	79	5	0	15	0.90
54615134--54615384	56	4.5	57	80	4	242	30	9	15	44	1.78
54618171--54618201	9	3.4	9	90	0	53	25	6	19	48	1.72
54629225--54629354	40	3.2	40	82	4	165	23	28	24	23	2.00
54637272--54637401	40	3.2	40	82	4	165	23	28	24	23	2.00
54639804--54639828	5	5.0	5	100	0	50	80	0	0	20	0.72
54647589--54647725	43	3.2	42	76	6	123	28	16	23	31	1.96
54653250--54653303	15	3.5	15	87	2	72	55	16	12	14	1.69
54669939--54670122	40	4.6	39	75	6	138	26	23	27	22	2.00
54669979--54670167	80	2.4	81	77	4	186	23	24	29	22	1.99
54672035--54672238	40	5.1	40	93	2	322	25	28	24	21	1.99
54673488--54673535	7	7.1	7	85	4	55	0	18	0	81	0.70
54676056--54676099	20	2.2	20	88	4	63	50	0	11	38	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54676374--54676530	43	3.7	43	75	5	140	27	15	23	33	1.95
54684069--54684149	10	7.9	10	72	15	67	20	12	3	62	1.44
54684064--54684108	22	2.0	22	100	0	90	17	17	4	60	1.53
54692428--54692461	2	17.0	2	100	0	68	50	0	0	50	1.00
54693409--54693449	21	2.0	21	100	0	82	60	0	0	39	0.96
54693413--54693474	14	4.3	15	75	13	51	59	1	0	38	1.07
54694101--54694151	3	17.0	3	100	0	102	0	33	0	66	0.92
54694565--54694604	18	2.2	19	86	4	55	20	27	2	50	1.61
54701541--54701614	31	2.3	32	80	15	82	33	6	0	59	1.24
54701520--54701643	48	2.6	47	81	3	122	37	4	1	56	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335