Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  119  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36216744--36216784
2
20.5
2
100
0
82
51
0
0
48
1.00
36217671--36217715
8
5.5
8
82
15
56
8
6
0
84
0.78
36218005--36219094
44
25.4
44
83
7
1287
22
31
17
28
1.96
36218005--36219094
132
8.5
132
87
5
1586
22
31
17
28
1.96
36218005--36219094
172
6.3
173
85
6
1463
22
31
17
28
1.96
36218519--36218578
30
2.0
30
96
0
111
28
30
18
23
1.98
36218464--36218622
74
2.1
74
91
0
264
23
32
16
27
1.96
36219056--36219279
88
2.6
88
89
2
326
28
27
16
27
1.97
36218005--36219196
260
4.6
259
86
6
1144
22
31
17
28
1.97
36220969--36221433
232
2.0
232
98
0
894
24
21
23
30
1.99
36231023--36231060
19
2.0
19
94
0
67
34
10
23
31
1.89
36232726--36232828
3
33.0
3
77
16
95
64
0
2
32
1.15
36237279--36237324
19
2.4
19
89
7
67
21
19
8
50
1.75
36237288--36237332
19
2.3
20
84
3
56
28
17
6
46
1.73
36237457--36237511
12
4.6
12
70
17
51
52
16
23
7
1.68
36237457--36237511
24
2.3
24
87
6
76
52
16
23
7
1.68
36237648--36237802
83
1.9
83
86
0
220
29
33
15
21
1.94
36245530--36245991
45
10.4
43
66
17
153
30
19
24
25
1.98
36245528--36245874
133
2.6
131
87
3
489
30
18
25
25
1.98
36245842--36245997
44
3.5
44
77
14
153
28
20
23
27
1.99
36245527--36245991
133
3.5
132
79
6
476
30
19
24
25
1.98
36251619--36251685
33
2.0
33
97
0
125
31
7
17
43
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36254071--36254127
30
1.9
30
85
0
78
57
10
1
29
1.42
36264736--36264785
20
2.6
19
76
17
59
54
0
0
46
1.00
36264869--36264987
34
3.4
34
72
15
114
46
6
3
43
1.46
36264839--36264987
73
2.0
73
97
0
280
45
8
4
41
1.54
36264839--36264958
39
3.2
39
72
15
144
45
10
4
40
1.59
36267586--36267669
26
3.2
26
94
0
150
33
5
25
35
1.80
36269452--36269738
137
2.1
137
98
0
547
24
19
24
31
1.98
36277531--36277591
19
3.2
19
76
6
52
36
1
37
24
1.66
36278338--36278371
18
1.9
17
88
5
50
44
8
5
41
1.60
36289483--36289927
131
3.4
128
76
7
372
28
17
15
37
1.91
36289672--36289927
130
2.0
129
85
2
343
26
17
18
37
1.93
36291180--36291229
25
2.0
25
84
4
64
64
2
4
30
1.23
36292471--36292520
10
5.0
10
88
9
75
72
2
6
20
1.16
36293138--36293170
8
3.7
9
88
12
50
0
12
0
87
0.53
36293192--36293373
96
1.9
97
88
1
276
30
26
15
26
1.96
36294169--36294207
10
4.2
9
87
12
53
79
0
2
17
0.84
36294165--36294207
14
3.2
14
90
6
63
79
0
2
18
0.85
36294165--36294207
13
3.2
13
87
6
59
79
0
2
18
0.85
36300408--36300457
10
5.0
10
83
13
59
70
6
4
20
1.25
36300408--36300457
20
2.5
21
87
12
70
70
6
4
20
1.25
36302651--36302675
13
1.9
13
100
0
50
16
8
16
60
1.58
36302611--36302713
53
1.9
53
96
0
188
22
17
23
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36302664--36302821
40
4.0
40
89
2
221
22
20
25
30
1.99
36302587--36302755
93
1.8
93
94
0
302
22
18
24
34
1.96
36302665--36302821
80
2.0
79
89
3
244
22
21
26
30
1.98
36305819--36305884
13
5.1
13
75
0
69
30
6
25
37
1.80
36305819--36305884
26
2.5
26
82
0
87
30
6
25
37
1.80
36315468--36315506
16
2.4
16
95
0
69
33
7
30
28
1.85
36315490--36315576
44
1.9
44
86
4
120
29
5
27
36
1.80
36315752--36315784
17
1.9
17
100
0
66
63
0
0
36
0.95
36316350--36316530
40
4.5
40
93
0
299
32
17
8
41
1.79
36320301--36320327
2
13.5
2
100
0
54
51
0
0
48
1.00
36323448--36323477
15
1.9
16
93
6
53
43
0
40
16
1.48
36325129--36325237
26
4.2
26
95
1
184
34
4
23
36
1.76
36326321--36326358
19
2.0
19
100
0
76
31
15
21
31
1.94
36329808--36329888
34
2.4
34
83
4
92
28
8
17
45
1.78
36329986--36330183
44
4.5
44
84
0
243
24
23
21
30
1.99
36331796--36331836
19
2.1
20
82
13
50
53
4
7
34
1.50
36332156--36332247
29
3.0
31
70
17
75
42
2
15
40
1.59
36334856--36334890
18
1.9
18
94
0
61
57
5
0
37
1.23
36338405--36338438
2
17.5
2
87
6
52
50
0
0
50
1.00
36346507--36346623
44
2.6
45
72
5
105
29
23
17
29
1.97
36346606--36346879
132
2.1
133
79
3
311
25
25
18
30
1.98
36346849--36347274
44
9.6
44
68
8
128
26
25
17
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36347014--36347272
44
5.8
44
71
6
137
27
24
17
30
1.97
36346832--36347359
177
3.0
176
88
3
776
26
24
18
30
1.98
36347190--36347286
44
2.2
44
83
7
124
31
24
15
27
1.95
36353107--36353160
26
2.1
27
82
6
67
24
14
24
37
1.93
36354639--36354722
26
3.2
26
96
0
150
36
25
4
33
1.77
36359763--36359826
28
2.4
28
94
5
114
31
12
12
43
1.80
36361374--36361603
3
75.3
3
73
12
139
29
5
3
62
1.34
36364231--36364268
14
2.5
15
87
12
60
42
0
0
57
0.98
36367140--36367188
26
2.0
26
88
8
75
30
0
6
63
1.19
36369351--36369408
30
2.0
29
82
3
71
29
13
24
32
1.94
36371169--36371267
18
5.5
18
80
2
101
41
13
9
36
1.76
36371169--36371270
36
2.8
36
79
2
116
40
13
9
36
1.78
36372185--36372219
9
4.0
9
88
7
54
17
11
0
71
1.14
36372185--36372231
17
2.7
18
86
6
69
17
10
0
72
1.12
36372185--36372227
13
3.3
13
83
9
52
16
11
0
72
1.13
36372913--36372942
2
15.0
2
100
0
60
50
0
0
50
1.00
36375778--36375808
2
15.5
2
100
0
62
48
0
0
51
1.00
36376818--36376997
46
3.9
46
89
2
238
18
23
14
42
1.87
36379073--36379130
11
5.2
11
80
12
73
67
0
0
32
0.91
36382352--36382418
28
2.3
30
79
7
84
25
34
17
22
1.96
36383875--36383912
17
2.2
17
86
9
51
21
0
2
76
0.91
36385995--36386064
7
9.7
7
73
17
63
24
1
1
72
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36385984--36386064
15
5.6
14
75
18
78
23
1
1
74
0.97
36385984--36386064
29
2.8
28
79
15
94
23
1
1
74
0.97
36385981--36386061
39
2.1
39
83
4
101
23
1
1
74
0.97
36385995--36386075
19
4.2
20
75
6
78
24
3
1
70
1.11
36386173--36386231
26
2.3
24
83
13
66
18
3
1
76
1.02
36386173--36386259
30
2.9
29
78
11
79
16
2
4
77
1.04
36386173--36386259
9
8.9
9
71
14
57
16
2
4
77
1.04
36390975--36391013
19
2.1
19
85
9
53
10
10
0
79
0.94
36391008--36391067
15
3.9
15
74
25
54
38
3
0
58
1.15
36392409--36392579
42
4.3
42
81
11
196
30
16
23
28
1.97
36392482--36392548
34
2.0
34
96
0
125
31
17
23
26
1.97
36394758--36394908
53
2.8
53
88
6
198
30
27
15
25
1.96
36401767--36401917
53
2.8
53
89
4
214
29
27
16
25
1.97
36404256--36404310
23
2.4
23
90
0
83
36
25
12
25
1.91
36404399--36404457
15
3.9
15
84
0
64
30
23
22
23
1.99
36405524--36405572
21
2.3
21
96
3
89
28
14
8
48
1.72
36408624--36408684
16
3.7
16
68
23
54
55
1
3
39
1.26
36408627--36408686
17
3.5
17
68
19
52
56
1
3
38
1.26
36408711--36408743
2
16.5
2
100
0
66
48
0
0
51
1.00
36413208--36413248
17
2.4
17
100
0
82
29
7
17
46
1.74
36417030--36417083
26
2.1
26
100
0
108
25
12
22
38
1.90
36420757--36420839
31
2.7
31
82
0
103
18
15
20
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36423744--36424028
135
2.1
137
96
1
520
31
25
18
24
1.97
36424276--36424327
25
2.0
26
85
3
70
25
13
23
38
1.91
36425809--36425915
26
4.2
26
96
2
184
37
25
4
32
1.77
36429666--36429949
136
2.1
135
93
3
482
32
24
17
25
1.97
36431730--36431839
26
4.2
26
90
0
184
36
24
5
33
1.79
36434042--36434070
15
1.9
15
100
0
58
27
13
17
41
1.87
36435584--36435656
32
2.5
27
76
19
83
24
4
20
50
1.65
36436648--36436690
22
2.0
22
95
0
77
30
6
20
41
1.79
36436646--36436694
22
2.2
22
88
0
62
28
6
20
44
1.75
36436609--36436736
68
1.9
68
93
0
202
27
7
21
42
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335