genome.fa.s5.2.7.7.80.10.50.1000.231.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  231  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69721710--69721831	51	2.4	51	87	4	176	27	24	22	25	2.00
69721953--69722043	42	2.2	42	86	4	121	30	13	20	35	1.91
69722067--69722172	31	3.4	31	93	0	176	30	16	25	28	1.96
69728790--69728814	9	2.8	9	100	0	50	24	0	36	40	1.55
69731188--69731212	5	5.0	5	100	0	50	80	0	0	20	0.72
69737116--69737456	27	12.6	27	84	0	380	39	21	9	30	1.84
69737495--69737752	27	9.6	27	90	0	363	35	22	18	23	1.96
69738197--69738261	22	3.0	22	77	8	69	20	21	23	35	1.96
69738420--69738503	27	3.1	27	84	6	82	17	20	22	39	1.92
69738442--69738521	27	3.0	26	87	7	99	18	22	21	37	1.94
69738658--69738738	32	2.6	32	86	2	101	19	17	11	51	1.74
69743772--69743807	17	2.1	18	89	5	56	38	8	16	36	1.79
69744396--69744435	20	1.9	22	85	10	57	55	2	5	37	1.35
69748839--69748969	30	4.5	30	86	8	171	32	13	25	28	1.94
69748839--69748969	58	2.2	58	86	4	174	32	13	25	28	1.94
69756790--69756920	30	4.5	30	86	8	171	32	13	25	28	1.94
69756790--69756920	58	2.2	58	86	4	174	32	13	25	28	1.94
69763622--69763730	45	2.5	45	89	5	161	27	29	21	22	1.99
69769179--69769204	5	5.2	5	100	0	52	42	19	19	19	1.90
69770230--69770266	9	4.1	9	92	0	65	29	10	13	45	1.77
69770318--69770350	9	3.7	9	91	0	57	39	24	12	24	1.89
69770318--69770352	18	1.9	18	100	0	70	37	22	11	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69770968--69770997	16	1.9	16	93	6	53	50	20	0	30	1.49
69773334--69773487	42	3.6	42	78	3	166	31	23	14	29	1.95
69773706--69773849	72	2.0	72	95	0	261	21	22	11	44	1.84
69774899--69774973	25	3.0	25	76	9	82	30	16	24	29	1.96
69774936--69775021	25	3.5	25	79	6	95	31	16	23	29	1.96
69774926--69775021	25	3.9	24	76	5	93	32	16	22	28	1.96
69774910--69775037	49	2.6	49	79	1	148	30	19	21	28	1.98
69776413--69776612	87	2.3	87	83	3	244	40	12	13	35	1.81
69776542--69776846	79	3.9	79	87	3	388	39	11	15	33	1.84
69779109--69779141	16	1.9	18	88	11	52	48	12	15	24	1.78
69779713--69779887	45	3.9	45	93	0	287	28	28	20	23	1.99
69782896--69783004	39	2.8	40	80	10	125	24	23	29	22	1.99
69782857--69783004	79	1.9	79	83	8	194	27	22	27	22	1.99
69782892--69783021	40	3.3	39	78	3	152	25	23	27	23	2.00
69790806--69790955	40	3.8	40	77	6	146	27	24	26	22	1.99
69790841--69790971	40	3.3	40	79	2	156	25	23	27	23	2.00
69796940--69797104	39	4.2	40	81	5	176	23	26	22	27	2.00
69810629--69810791	39	4.2	39	91	0	254	22	20	32	23	1.98
69815971--69816077	54	1.9	53	82	14	128	32	19	15	31	1.94
69816193--69816449	53	4.9	53	78	5	220	27	22	12	37	1.91
69829400--69829425	12	2.2	12	100	0	52	7	15	30	46	1.74
69829449--69829684	41	6.1	38	79	11	164	33	22	25	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69829552--69829686	41	3.3	41	92	0	225	28	22	27	20	1.99
69829725--69829758	15	2.4	14	90	5	50	20	0	32	47	1.51
69829777--69829897	7	17.1	7	78	8	93	17	1	40	40	1.59
69830512--69830543	16	2.0	16	93	0	55	75	3	0	21	0.95
69834297--69834349	27	2.0	27	82	14	65	28	5	3	62	1.35
69834363--69834461	43	2.3	43	89	0	144	21	22	30	26	1.99
69840189--69840223	16	2.2	16	89	0	52	37	5	22	34	1.78
69840442--69840523	40	2.0	40	97	0	155	36	7	9	46	1.65
69840442--69840507	22	3.2	22	64	24	61	36	6	12	45	1.66
69847744--69848188	88	5.1	88	90	1	644	35	13	17	34	1.88
69852133--69852293	29	5.6	29	87	0	178	27	15	32	24	1.95
69856447--69856481	17	2.1	17	94	0	61	42	20	17	20	1.89
69858259--69858312	28	1.9	28	85	7	74	59	3	1	35	1.26
69866910--69867833	230	4.0	231	99	0	1793	34	22	14	27	1.94
69874846--69874901	22	2.7	21	78	8	60	48	3	3	44	1.37
69875291--69875327	10	3.6	10	92	3	56	75	5	0	18	0.99
69875303--69875392	42	2.1	42	80	10	94	61	4	0	34	1.16
69875303--69875385	43	1.9	43	82	7	105	59	4	0	36	1.19
69875973--69876005	14	2.3	15	90	10	52	54	0	3	42	1.15
69877238--69877279	22	1.9	22	90	0	66	11	19	7	61	1.52
69881112--69881137	7	3.7	7	100	0	52	61	0	15	23	1.33
69881852--69881883	9	3.6	9	91	0	55	25	3	28	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69881843--69881911	18	3.8	18	86	0	84	27	7	20	44	1.77
69882107--69882136	16	1.9	16	93	6	53	73	0	0	26	0.84
69888940--69889023	43	2.0	43	90	0	132	19	20	30	29	1.97
69889470--69889566	32	3.0	32	100	0	194	41	12	21	24	1.88
69899099--69899254	43	3.6	43	80	5	172	28	14	23	33	1.94
69904441--69904661	40	5.5	40	86	2	275	24	20	26	28	1.99
69904441--69904701	120	2.2	120	80	6	271	25	21	26	27	1.99
69909978--69910128	43	3.5	42	80	5	153	29	14	23	33	1.94
69915445--69915482	20	1.9	20	88	0	58	42	5	10	42	1.62
69917889--69917927	2	19.5	2	100	0	78	51	0	0	48	1.00
69919943--69920061	57	2.1	57	95	0	211	27	25	9	37	1.86
69921213--69921268	22	2.6	22	82	2	69	42	16	1	39	1.58
69921420--69921527	53	2.1	53	94	1	191	31	1	4	62	1.26
69922375--69922433	29	2.0	29	93	0	100	37	8	8	45	1.65
69922421--69922452	7	4.6	7	92	0	55	28	3	12	56	1.51
69922951--69923046	30	3.2	30	77	0	102	31	39	14	14	1.86
69926628--69926871	125	2.0	125	91	1	400	29	16	17	36	1.92
69926924--69927041	34	3.9	28	70	19	76	38	17	2	40	1.64
69927011--69927063	22	2.4	22	90	0	79	41	16	1	39	1.60
69926947--69927110	86	1.9	86	82	2	204	41	16	1	40	1.59
69928014--69928047	15	2.2	16	94	5	61	29	0	0	70	0.87
69928562--69928599	18	2.1	18	95	0	67	50	5	10	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69929085--69929115	14	2.1	15	94	5	55	38	0	6	54	1.26
69932320--69932374	20	2.7	20	78	16	58	40	3	1	54	1.28
69932655--69932701	13	3.5	14	80	5	53	76	2	8	12	1.09
69933460--69933568	40	2.8	39	79	8	105	34	8	21	35	1.83
69933768--69933879	45	2.5	45	80	2	145	22	16	17	43	1.87
69933858--69933898	18	2.2	19	86	4	57	24	21	9	43	1.83
69933911--69933945	18	1.9	18	100	0	70	31	22	22	22	1.98
69933913--69933954	18	2.3	18	91	0	66	30	23	21	23	1.99
69939162--69939205	23	1.9	23	90	0	70	36	22	22	18	1.95
69947436--69947465	9	3.3	9	100	0	60	73	0	0	26	0.84
69947152--69947642	250	2.0	241	93	3	838	41	7	12	38	1.72
69948116--69948183	23	2.9	24	73	10	68	60	1	4	33	1.26
69948401--69948470	32	2.2	32	82	9	90	60	1	2	35	1.21
69960998--69961264	99	2.8	98	78	13	270	21	29	20	28	1.98
69961143--69961269	46	2.7	45	88	9	168	21	30	20	27	1.98
69961558--69961629	30	2.4	30	100	0	144	23	31	15	29	1.95
69978104--69978270	46	3.6	46	81	8	171	22	26	22	28	1.99
69977999--69978264	138	1.9	143	83	6	355	21	27	21	29	1.99
69978985--69979009	12	2.1	12	100	0	50	60	16	8	16	1.58
69981143--69981292	50	3.0	49	91	3	230	37	20	18	23	1.94
69981143--69981292	49	3.0	48	91	5	228	37	20	18	23	1.94
69984844--69984886	21	2.0	21	95	0	77	18	41	16	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69987577--69987744	40	4.2	40	78	6	153	22	26	23	27	1.99
69987593--69987742	80	1.9	80	82	10	191	21	27	24	27	1.99
69992099--69992144	25	1.9	23	86	8	65	39	6	0	54	1.26
69992249--69992274	12	2.2	12	100	0	52	57	7	7	26	1.54
69994170--69994208	20	2.0	20	85	10	53	33	7	12	46	1.71
70001167--70001213	23	2.0	23	100	0	94	53	8	12	25	1.67
70005570--70005708	73	1.9	74	88	4	210	31	14	10	43	1.78
70005652--70006486	88	9.6	87	81	5	789	33	11	12	42	1.79
70005643--70006210	265	2.1	265	85	3	768	33	12	11	42	1.78
70005643--70006462	177	4.7	176	81	5	841	33	11	12	42	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335