genome.fa.s5.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  173  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51652252--51652380	40	3.3	39	79	5	152	24	22	27	24	2.00
51655806--51655835	2	15.0	2	92	0	51	50	3	0	46	1.18
51656555--51656695	40	3.5	40	85	0	174	26	22	25	25	2.00
51670519--51670573	27	2.0	27	100	0	110	30	25	7	36	1.83
51680270--51680385	29	4.0	29	88	1	162	29	32	13	24	1.94
51686590--51686656	28	2.3	29	87	2	100	31	31	11	25	1.92
51686867--51686914	16	3.0	16	71	0	51	10	22	18	47	1.79
51690189--51690231	20	2.2	20	82	0	50	37	16	2	44	1.60
51691733--51691805	38	1.9	38	94	0	128	38	16	12	32	1.86
51696182--51696261	41	2.0	40	95	2	142	35	20	23	21	1.96
51710902--51710956	20	2.8	20	80	5	67	10	20	23	45	1.82
51710886--51710950	20	3.2	20	76	8	78	12	24	21	41	1.87
51710850--51710977	40	3.2	40	84	3	161	15	25	20	39	1.92
51711745--51711798	20	2.7	20	94	0	90	46	0	31	22	1.52
51714331--51714434	42	2.5	42	85	0	127	39	19	11	29	1.87
51718823--51718959	18	7.3	18	76	11	123	35	1	16	46	1.56
51718822--51718939	27	3.7	34	71	23	105	35	1	15	47	1.55
51718860--51718959	9	11.6	9	80	10	111	34	0	18	48	1.48
51718828--51718959	59	2.2	62	90	5	207	34	0	17	46	1.53
51719892--51719920	15	1.9	15	100	0	58	48	0	27	24	1.51
51721418--51721497	27	3.0	27	88	3	108	20	21	43	15	1.87
51722215--51722334	41	2.9	41	88	0	177	20	25	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51725239--51725299	26	2.5	23	82	14	86	9	9	18	62	1.53
51725246--51725299	26	2.1	26	100	0	108	7	11	18	62	1.50
51729375--51729451	28	2.8	28	83	0	109	37	9	22	31	1.85
51729524--51729824	39	7.7	39	92	1	462	18	21	29	30	1.97
51735618--51735747	47	2.8	47	85	4	181	26	16	24	32	1.96
51736924--51737109	40	4.7	40	83	1	203	27	22	25	24	2.00
51736924--51737130	40	5.2	39	80	6	193	26	21	26	25	2.00
51736926--51737130	79	2.6	79	82	5	218	25	21	26	25	2.00
51753862--51754222	49	7.4	49	95	0	578	31	8	29	30	1.87
51754291--51754377	37	2.3	36	94	5	147	20	19	33	26	1.97
51760096--51760164	22	3.1	21	81	8	75	20	20	15	43	1.88
51773776--51773905	40	3.3	39	76	8	136	23	27	23	24	2.00
51773792--51773943	40	3.8	40	78	6	148	22	26	23	27	1.99
51773792--51773941	80	1.9	80	83	8	198	22	26	24	27	1.99
51781797--51781926	40	3.3	39	76	8	136	23	27	23	24	2.00
51781813--51781964	40	3.8	40	78	6	148	22	26	23	27	1.99
51781813--51781962	80	1.9	80	83	8	198	22	26	24	27	1.99
51784873--51785059	71	2.7	68	93	5	281	18	28	18	34	1.95
51784896--51785059	71	2.3	71	100	0	328	18	28	17	35	1.94
51784896--51785093	71	2.8	70	91	3	258	20	28	17	33	1.95
51792531--51792699	40	4.2	40	84	4	216	21	28	24	25	1.99
51800619--51800828	40	5.2	40	87	4	298	21	28	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51801409--51801529	59	2.1	59	100	0	242	43	28	9	18	1.80
51806006--51806047	18	2.3	19	80	8	52	21	4	16	57	1.58
51812371--51812441	28	2.5	28	90	4	108	32	26	12	28	1.93
51812826--51813113	101	2.8	102	96	1	533	41	14	7	36	1.74
51820636--51820879	40	6.1	40	92	1	350	25	28	23	22	1.99
51828649--51828983	40	8.5	40	91	2	484	27	27	22	23	1.99
51831416--51831475	30	2.0	30	83	0	75	33	25	3	38	1.72
51836916--51837093	40	4.4	39	75	6	133	26	22	25	25	2.00
51844836--51845014	40	4.5	40	81	6	193	25	24	26	24	2.00
51844837--51845028	80	2.4	80	82	3	217	26	24	26	22	2.00
51844957--51845040	40	2.1	40	82	4	98	26	27	26	20	1.99
51850084--51850143	30	2.0	30	83	0	75	33	25	3	38	1.72
51851011--51851061	20	2.7	19	72	19	52	33	9	15	41	1.80
51860911--51860945	17	2.0	18	88	5	54	20	0	8	71	1.11
51866239--51866308	28	2.5	28	90	4	106	32	27	12	27	1.93
51866863--51866894	2	16.0	2	100	0	64	50	0	0	50	1.00
51868889--51868928	2	20.0	2	100	0	80	50	0	0	50	1.00
51868923--51868982	27	2.3	26	85	2	75	23	20	20	36	1.95
51871035--51871466	27	16.0	27	90	0	621	35	19	19	24	1.95
51871871--51871918	22	2.2	22	85	7	62	22	29	20	27	1.99
51872077--51872187	27	4.1	28	83	6	122	20	20	21	36	1.95
51872099--51872199	27	3.7	27	88	4	132	23	21	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51872092--51872211	54	2.2	54	85	5	154	21	20	20	38	1.94
51872360--51872420	25	2.4	25	91	0	95	21	22	9	45	1.81
51873843--51873889	18	2.6	18	96	0	85	40	8	19	31	1.81
51875849--51875892	21	2.1	21	83	8	54	59	0	11	29	1.32
51876662--51876771	41	2.7	41	76	8	125	17	20	21	40	1.92
51881162--51881349	40	4.7	40	90	3	290	25	21	27	26	2.00
51881162--51881372	80	2.7	79	84	7	286	26	21	26	25	2.00
51881162--51881374	40	5.4	40	83	7	202	26	21	26	25	2.00
51895605--51895755	40	3.8	39	80	6	153	27	23	27	22	1.99
51895642--51895771	40	3.3	39	80	4	161	24	23	27	24	2.00
51906264--51906393	40	3.2	40	81	2	163	23	23	28	24	2.00
51908717--51909085	184	2.0	184	98	1	713	28	11	13	46	1.78
51912233--51912262	13	2.3	13	94	0	51	26	0	0	73	0.84
51931185--51931407	48	4.6	48	82	6	238	26	29	17	26	1.97
51931186--51931407	96	2.3	96	83	3	286	27	29	17	26	1.97
51931613--51931792	48	3.8	48	79	1	209	22	27	22	26	1.99
51931611--51931801	96	2.0	96	90	0	301	23	27	21	27	1.99
51935309--51935350	2	21.0	2	95	0	75	47	0	2	50	1.14
51943820--51943890	26	2.7	27	91	4	117	33	18	18	29	1.95
51946402--51946478	27	2.9	27	84	0	91	35	19	19	25	1.95
51946464--51946700	27	8.7	26	74	11	129	41	18	8	31	1.81
51946464--51946613	54	2.8	54	76	8	144	43	20	7	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51946936--51947022	27	3.2	25	79	12	84	19	20	22	36	1.95
51951954--51951997	22	2.0	22	100	0	88	13	13	13	59	1.62
51961113--51961142	2	15.0	2	100	0	60	50	0	0	50	1.00
51968550--51968580	5	6.2	5	96	0	53	22	16	19	41	1.89
51968633--51968690	27	2.2	26	78	6	62	31	18	18	31	1.96
51972709--51972918	40	5.2	40	87	2	305	25	24	28	21	1.99
51980843--51981052	40	5.2	40	87	2	305	25	24	28	21	1.99
51982994--51983203	40	5.2	40	87	2	305	25	24	28	21	1.99
51984233--51984325	40	2.3	40	100	0	186	23	29	22	24	1.99
51988152--51988244	42	2.2	42	83	7	109	31	18	24	25	1.98
51990031--51990071	2	21.0	2	90	5	66	48	0	2	48	1.14
52012547--52012767	39	5.7	39	89	2	329	19	22	28	29	1.98
52020517--52020573	24	2.4	24	100	0	114	36	3	22	36	1.72
52022328--52022395	6	11.5	6	83	9	86	79	0	2	17	0.86
52022308--52022395	18	4.9	17	82	10	88	77	0	3	19	0.91
52024409--52024497	27	3.2	28	90	3	146	17	25	23	32	1.97
52024407--52024521	27	4.3	26	85	5	122	18	23	22	35	1.95
52024407--52024521	55	2.1	54	84	7	153	18	23	22	35	1.95
52031460--52031484	13	1.9	13	100	0	50	16	36	32	16	1.90
52033990--52034296	47	6.6	45	75	14	232	23	28	20	28	1.99
52033940--52034299	94	3.8	93	79	10	342	23	28	20	28	1.99
52033936--52034299	141	2.6	136	78	11	346	22	28	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52034639--52034696	30	1.9	30	89	0	89	29	25	12	32	1.92
52041681--52041740	26	2.3	27	82	2	68	43	16	13	26	1.85
52044534--52044584	25	2.0	25	85	7	68	31	19	17	31	1.95
52046831--52046958	47	2.7	47	87	3	177	33	27	15	23	1.95
52057465--52057501	17	2.1	17	90	5	56	2	37	2	56	1.28
52061391--52061508	41	3.1	41	60	28	98	32	17	28	21	1.96
52061359--52061522	71	2.3	71	100	0	328	35	17	28	18	1.94
52073144--52073353	40	5.2	40	87	2	305	25	24	28	21	1.99
52078401--52078512	43	2.6	43	94	0	197	30	32	25	11	1.91
52078505--52078610	38	2.8	38	86	0	140	28	26	22	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335