Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  122  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36983400--36983478
19
4.1
19
75
13
72
27
7
1
63
1.29
36983513--36983590
5
14.0
5
76
19
57
29
17
1
51
1.54
36983501--36983584
28
3.3
24
75
18
73
32
17
0
50
1.47
36983665--36983701
18
1.9
18
89
10
56
21
13
0
64
1.27
36983730--36983772
21
2.0
21
81
0
50
32
6
2
58
1.38
36983822--36983932
57
1.9
58
85
5
154
15
27
16
40
1.88
36983991--36984184
48
4.1
48
72
14
154
24
11
1
62
1.35
36984071--36984313
21
10.5
21
70
21
132
26
11
0
62
1.29
36984164--36984316
48
3.2
47
86
2
198
26
12
0
61
1.31
36984002--36984317
69
4.5
69
75
15
222
25
12
0
62
1.34
36984181--36984345
27
6.5
27
73
19
142
24
12
0
61
1.35
36984165--36984375
27
8.5
24
66
20
96
24
12
0
63
1.32
36984229--36984375
76
1.9
76
87
8
219
21
13
0
63
1.33
36984333--36984386
21
2.7
20
80
11
56
24
12
0
62
1.30
36987558--36987628
16
4.4
16
87
0
106
36
5
28
29
1.80
36987610--36987703
44
2.1
46
88
4
138
30
6
28
34
1.82
36987774--36987824
25
2.0
25
82
17
61
39
0
7
52
1.30
36987864--36987922
20
2.8
21
79
10
75
52
1
0
45
1.10
36987826--36987946
57
2.2
54
78
11
127
53
2
0
43
1.14
36987898--36987943
24
1.9
24
86
8
67
47
2
0
50
1.13
36990386--36990465
40
2.0
40
95
2
144
37
15
16
31
1.89
36994057--36994103
19
2.6
19
81
15
55
40
2
0
57
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36994644--36994710
30
2.2
30
83
0
80
47
8
10
32
1.69
37001583--37001613
14
2.1
15
94
5
55
83
0
0
16
0.64
37002175--37002225
25
2.2
22
82
10
57
33
3
0
62
1.13
37002404--37002517
2
61.0
2
73
16
84
42
1
1
53
1.21
37002407--37002517
50
2.3
48
87
6
152
42
1
1
54
1.21
37002405--37002494
27
3.4
27
78
9
105
43
2
1
53
1.20
37002636--37002709
24
3.0
23
70
14
58
35
5
5
54
1.47
37002852--37002893
21
2.0
22
90
4
68
30
2
0
66
1.04
37002839--37002890
19
2.8
18
83
11
61
34
3
0
61
1.14
37007052--37007193
74
1.9
74
88
0
212
44
13
15
26
1.83
37007314--37007421
42
2.5
43
87
1
164
25
35
21
17
1.95
37008333--37008385
22
2.4
22
87
6
72
43
22
5
28
1.76
37008781--37009282
23
21.9
23
75
13
360
37
24
5
32
1.79
37008774--37009277
207
2.5
205
94
1
859
36
24
5
32
1.79
37008787--37009282
91
5.4
91
75
11
381
37
24
5
33
1.78
37010444--37010493
12
4.2
12
73
14
50
42
24
0
34
1.55
37012322--37012364
21
2.1
22
87
12
65
30
0
2
67
1.03
37012294--37012342
8
6.2
8
78
4
55
34
0
2
63
1.06
37012574--37012681
7
14.9
7
69
11
65
33
39
2
24
1.70
37012578--37012677
38
2.7
38
80
11
100
34
41
3
22
1.69
37013290--37013416
41
3.1
41
82
2
130
20
23
18
37
1.95
37015870--37015912
3
14.0
3
81
13
52
27
0
4
67
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37015887--37015916
9
3.3
9
95
0
51
26
0
6
66
1.16
37025757--37025843
41
2.2
40
85
2
111
66
6
1
25
1.23
37037710--37037756
24
2.0
24
86
0
67
10
6
25
57
1.56
37039488--37039542
15
3.7
15
80
0
56
20
67
1
10
1.30
37039493--37039542
21
2.4
21
93
0
82
20
68
0
12
1.21
37039488--37039560
6
12.7
6
80
8
62
19
64
2
13
1.40
37039606--37039668
15
4.2
15
83
0
72
12
63
3
20
1.42
37039610--37039669
30
2.0
30
90
0
93
11
63
3
21
1.42
37039678--37039719
12
3.5
12
83
0
57
28
45
11
14
1.80
37039819--37039865
24
2.0
24
83
8
60
36
40
8
14
1.77
37039869--37039918
21
2.4
21
79
0
64
16
64
0
20
1.30
37046882--37047279
44
9.0
44
73
5
264
30
20
16
33
1.94
37046881--37047265
133
2.9
134
79
5
359
29
20
15
34
1.94
37047017--37047282
89
3.0
89
86
2
347
30
21
16
31
1.95
37052055--37052140
43
2.0
43
100
0
172
25
18
25
30
1.98
37059061--37059093
17
1.9
17
93
0
57
72
0
6
21
1.05
37062228--37062283
29
1.9
29
88
0
85
69
1
1
26
1.08
37062443--37062511
20
3.5
20
82
11
88
34
0
2
62
1.10
37062487--37062538
27
2.0
27
85
11
72
32
1
1
63
1.16
37062583--37062617
11
3.3
11
84
8
54
22
0
8
68
1.16
37062583--37062627
21
2.1
21
88
8
65
24
2
6
66
1.27
37065330--37065363
2
17.0
2
100
0
68
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37065628--37065654
2
13.5
2
100
0
54
48
0
0
51
1.00
37066279--37066308
2
15.0
2
100
0
60
50
0
0
50
1.00
37071932--37072048
15
8.1
14
72
17
62
26
7
0
64
1.26
37071920--37072027
29
3.8
28
73
22
82
26
7
1
63
1.31
37071995--37072040
15
2.9
15
90
6
65
26
6
0
67
1.15
37071963--37072084
52
2.4
54
74
18
125
27
7
0
64
1.20
37074154--37074199
19
2.4
18
79
10
56
21
21
13
43
1.86
37078672--37078881
45
4.7
45
70
15
175
28
18
22
30
1.97
37078584--37078907
133
2.4
133
91
0
531
27
19
21
31
1.97
37078400--37078945
133
4.1
132
74
10
482
29
19
21
29
1.97
37078759--37079085
178
1.8
177
91
0
537
30
18
20
30
1.97
37078936--37079192
134
1.9
134
88
0
388
29
18
21
30
1.97
37079221--37079663
88
5.0
87
89
1
634
34
20
21
22
1.97
37079218--37079663
176
2.5
176
92
0
723
34
21
21
22
1.96
37079248--37079826
44
13.1
45
69
15
336
34
20
21
23
1.97
37080840--37080910
15
4.9
14
77
13
63
25
8
0
66
1.20
37080847--37080880
14
2.3
15
90
5
52
26
5
0
67
1.13
37080838--37080920
44
1.9
42
88
9
123
26
8
0
65
1.21
37080841--37080932
44
2.2
44
84
9
120
28
7
0
64
1.21
37080981--37081005
4
6.2
4
100
0
50
24
0
0
76
0.80
37085162--37085193
16
2.0
16
100
0
64
25
12
25
37
1.91
37091820--37091861
21
2.0
22
90
4
68
28
11
4
54
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37092686--37092780
48
2.1
47
86
11
135
43
5
22
29
1.75
37097471--37097504
17
1.9
18
88
5
52
73
0
2
23
0.97
37107848--37107874
14
1.9
14
100
0
54
0
0
62
37
0.95
37107907--37107956
24
2.1
24
100
0
100
24
16
16
44
1.86
37114689--37114735
23
2.0
23
88
12
69
31
4
0
63
1.13
37116581--37116688
44
2.4
44
87
3
144
29
23
13
33
1.93
37118632--37118700
35
2.0
35
100
0
138
43
17
24
14
1.86
37122767--37122938
93
1.8
93
96
0
317
27
30
22
20
1.98
37122759--37122934
46
3.8
46
81
10
232
28
29
21
20
1.98
37125866--37125898
16
2.1
16
100
0
66
54
15
12
18
1.71
37127103--37127144
20
2.1
20
86
0
57
35
9
2
52
1.47
37127298--37127336
19
2.1
19
100
0
78
25
12
15
46
1.81
37130364--37130403
18
2.2
18
86
0
53
62
5
32
0
1.17
37131410--37131536
56
2.3
56
81
8
143
35
7
1
55
1.36
37133194--37133279
36
2.4
35
80
14
88
39
2
20
37
1.66
37143205--37143259
21
2.6
23
77
16
64
50
3
3
41
1.37
37144767--37144794
2
14.0
2
100
0
56
50
0
0
50
1.00
37145500--37145546
22
2.1
22
92
0
76
53
4
17
25
1.62
37147230--37147324
6
15.8
6
88
0
109
1
58
17
22
1.44
37149798--37149828
15
2.1
14
94
5
53
90
0
0
9
0.46
37151095--37151158
28
2.4
28
85
10
82
60
3
4
31
1.32
37151319--37151345
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37151745--37151801
27
2.1
27
80
6
62
66
1
8
22
1.29
37151850--37151881
3
10.7
3
100
0
64
34
0
31
34
1.58
37152786--37152827
20
2.0
20
90
4
66
80
0
9
9
0.89
37154322--37154375
27
2.0
26
92
3
90
42
37
11
9
1.73
37156689--37156744
18
3.3
18
65
27
50
12
30
33
23
1.92
37156666--37156796
32
4.1
32
85
2
158
16
35
28
19
1.94
37158871--37159035
35
4.7
35
81
6
156
34
25
10
29
1.89
37158871--37159035
69
2.4
70
82
3
199
34
25
10
29
1.89
37164485--37164522
19
2.0
20
84
5
51
34
13
2
50
1.55
37168027--37168583
300
1.8
304
83
6
752
40
8
12
38
1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335