Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  328  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96379321--96379346
5
5.2
5
100
0
52
61
0
38
0
0.96
96390878--96390902
13
1.9
13
100
0
50
20
0
8
72
1.10
96394067--96394102
18
1.9
18
88
5
54
36
0
0
63
0.94
96394110--96394142
16
1.9
18
88
11
52
48
6
3
42
1.43
96404024--96404093
34
2.1
34
100
0
140
42
17
8
31
1.79
96424902--96424929
6
4.7
6
100
0
56
50
0
14
35
1.43
96425062--96425091
2
15.0
2
100
0
60
50
0
0
50
1.00
96430412--96430456
22
2.0
22
100
0
90
17
8
33
40
1.81
96434339--96434365
2
13.5
2
100
0
54
48
0
0
51
1.00
96436152--96436233
40
2.0
40
100
0
164
36
21
12
29
1.90
96437687--96437725
19
2.1
19
90
0
60
25
0
5
69
1.09
96439350--96439392
18
2.4
18
88
7
61
46
0
0
53
1.00
96444977--96445037
32
1.9
32
96
0
113
45
16
6
31
1.73
96446361--96446496
70
1.9
71
96
1
256
47
11
11
29
1.76
96449624--96449670
14
3.3
15
85
8
71
27
4
2
65
1.22
96449625--96449685
28
2.2
28
81
0
68
31
3
1
63
1.20
96449862--96449926
33
2.0
33
87
6
96
55
4
3
36
1.36
96450522--96450608
26
3.3
26
82
11
79
41
35
5
17
1.73
96450546--96450608
7
9.4
7
72
6
51
42
34
3
19
1.67
96450550--96450609
21
3.0
21
83
9
81
41
33
3
21
1.70
96450632--96450680
7
7.1
7
81
4
64
24
14
32
28
1.94
96455360--96455602
77
3.2
78
81
5
287
42
14
18
25
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96462042--96462099
31
1.9
30
92
3
98
41
17
3
37
1.66
96467801--96467835
18
1.9
18
88
0
52
60
0
0
40
0.97
96467905--96467948
21
2.1
21
83
8
54
54
0
2
43
1.12
96470980--96471035
21
2.8
21
82
15
73
60
3
0
35
1.14
96470982--96471048
19
3.4
19
81
10
64
56
2
0
40
1.14
96472227--96472252
2
13.0
2
100
0
52
50
0
0
50
1.00
96473008--96473046
2
20.0
2
94
5
71
51
0
0
48
1.00
96475005--96475034
3
10.0
3
100
0
60
66
0
0
33
0.92
96480149--96480183
9
3.9
9
89
10
54
17
2
0
80
0.84
96480586--96480615
16
1.9
16
93
6
53
53
0
0
46
1.00
96480978--96481024
20
2.4
19
80
16
51
27
2
0
70
0.99
96484817--96484967
53
2.8
53
88
6
198
30
27
15
25
1.96
96488647--96488673
2
13.5
2
100
0
54
48
0
0
51
1.00
96488843--96488874
12
2.4
14
80
20
50
25
12
6
56
1.59
96488848--96488874
12
2.2
12
100
0
54
22
14
7
55
1.64
96491912--96491997
3
28.7
3
68
9
50
56
5
0
37
1.23
96491919--96491992
11
6.7
11
69
10
53
55
6
0
37
1.27
96491912--96491992
33
2.5
33
92
4
139
55
6
0
38
1.25
96494202--96494257
18
3.1
18
79
5
51
53
5
1
39
1.34
96496577--96496630
19
2.9
18
84
10
65
53
1
0
44
1.11
96497013--96497051
17
2.3
17
90
0
60
35
35
7
20
1.81
96500021--96500049
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96500766--96500862
41
2.4
41
84
1
106
23
22
22
30
1.99
96500777--96500862
41
2.1
41
86
0
118
24
22
22
31
1.98
96500935--96501213
113
2.4
112
81
5
301
32
20
21
25
1.97
96501645--96501687
15
2.9
14
82
3
50
20
0
37
41
1.53
96502563--96502637
37
2.0
37
100
0
150
29
34
0
36
1.58
96502566--96502646
37
2.4
34
89
10
121
30
37
0
32
1.58
96504696--96504948
134
1.9
133
98
0
488
19
9
18
51
1.74
96506939--96506978
21
1.9
21
94
0
71
30
10
12
47
1.74
96508629--96508695
24
2.8
24
86
8
100
26
19
7
46
1.76
96508872--96508927
15
3.8
15
80
20
73
46
0
0
53
1.00
96509032--96509243
9
23.6
9
75
11
123
47
12
1
38
1.51
96509118--96509267
50
2.9
52
73
16
161
48
12
0
39
1.45
96509190--96509227
17
2.4
17
86
8
53
55
5
0
39
1.23
96509156--96509317
60
2.7
61
81
11
167
47
12
1
38
1.50
96510793--96510893
39
2.5
40
85
1
132
30
22
24
21
1.99
96510793--96510974
40
4.6
40
82
4
181
28
22
26
23
1.99
96518799--96518969
40
4.3
39
77
10
159
28
21
26
23
1.99
96526761--96526882
25
4.7
26
86
8
160
8
0
33
58
1.28
96527013--96527132
25
4.7
25
84
11
154
60
31
0
8
1.27
96527039--96527126
29
3.2
28
76
20
105
62
29
0
7
1.23
96531715--96531756
20
2.0
22
86
9
61
45
0
0
54
0.99
96531764--96531805
13
2.9
14
80
13
50
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96531768--96531804
16
2.3
16
86
13
58
59
0
0
40
0.97
96531837--96531893
15
3.5
15
71
17
51
50
0
1
47
1.11
96533150--96533205
22
2.5
21
82
8
58
58
5
1
33
1.31
96533221--96533327
25
4.3
25
72
15
80
51
5
8
34
1.56
96533213--96533327
51
2.3
50
78
8
128
52
6
7
33
1.55
96533311--96533411
15
6.9
15
69
15
59
61
2
1
33
1.22
96533334--96533420
41
2.2
40
89
6
131
59
2
2
35
1.22
96533379--96533448
31
2.4
31
79
9
76
64
1
4
30
1.21
96533466--96533802
12
30.4
11
66
22
83
58
2
6
32
1.37
96533543--96533802
3
86.0
3
66
22
70
60
2
6
31
1.35
96533543--96533778
24
10.3
23
68
18
95
60
2
5
30
1.34
96533635--96533682
20
2.3
21
83
16
57
58
4
0
37
1.18
96533543--96533803
21
12.8
20
66
23
86
59
2
6
31
1.35
96533925--96533980
24
2.3
24
81
0
67
57
1
10
30
1.43
96535367--96535400
14
2.4
14
90
0
50
23
23
11
41
1.87
96541230--96541313
26
3.2
26
96
0
150
36
25
4
33
1.77
96543086--96543164
28
2.9
27
78
9
63
43
1
2
53
1.22
96544145--96544187
16
2.8
16
75
3
52
51
0
2
46
1.13
96547975--96548027
26
2.0
27
89
7
83
45
9
26
18
1.80
96548482--96548511
3
10.0
3
100
0
60
33
33
0
33
1.58
96548817--96549007
93
2.1
93
100
0
382
48
9
11
30
1.71
96551786--96551845
29
2.1
29
84
12
79
66
3
10
20
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96554181--96554221
21
1.9
22
90
5
66
21
2
51
24
1.60
96554179--96554232
11
5.0
11
86
4
65
25
5
48
20
1.71
96558285--96558326
18
2.3
18
95
0
75
42
14
14
28
1.84
96558866--96558920
11
5.1
11
84
8
69
27
1
47
23
1.62
96560951--96560986
17
2.1
17
100
0
72
11
22
22
44
1.84
96564644--96564687
17
2.6
17
92
0
70
25
25
29
20
1.99
96565368--96565526
34
4.6
34
77
9
135
33
10
15
40
1.81
96567244--96567271
14
2.0
14
100
0
56
35
28
14
21
1.92
96567293--96567345
26
2.0
28
88
7
83
49
11
24
15
1.77
96573890--96574002
42
2.7
42
88
0
163
28
24
15
31
1.95
96574114--96574292
31
5.8
31
95
1
306
24
27
21
26
1.99
96574268--96574444
50
3.5
50
84
8
234
25
23
16
33
1.95
96578320--96578562
88
2.7
89
76
7
224
38
8
16
37
1.78
96605283--96605321
17
2.2
19
90
9
64
64
5
5
25
1.35
96608134--96608172
19
2.1
18
95
4
69
53
0
5
41
1.23
96611936--96611967
15
2.1
15
94
0
55
40
6
15
37
1.73
96616926--96616985
30
2.0
30
100
0
120
46
13
10
30
1.75
96616928--96616993
30
2.2
30
91
0
105
48
12
12
27
1.76
96618223--96618261
19
2.0
20
85
14
55
43
0
5
51
1.24
96618607--96618636
15
2.1
15
93
6
53
50
0
0
50
1.00
96621756--96621851
46
2.1
46
100
0
192
51
15
10
22
1.74
96628199--96628261
20
3.1
19
82
11
63
38
1
1
58
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96628264--96628306
19
2.3
19
84
8
52
41
2
2
53
1.26
96635807--96635871
32
2.0
32
96
0
121
53
13
15
16
1.73
96637526--96637578
26
2.0
27
85
7
72
47
11
18
22
1.81
96638093--96638191
43
2.3
42
79
8
119
26
21
27
25
1.99
96638244--96638326
31
2.6
31
80
3
85
61
19
4
14
1.50
96639001--96639027
12
2.2
12
100
0
54
51
11
0
37
1.37
96644205--96644293
9
9.6
9
74
7
79
31
2
20
46
1.63
96644221--96644287
27
2.5
27
87
0
89
31
2
19
46
1.65
96644412--96644845
241
1.8
240
97
0
832
33
14
17
33
1.91
96648212--96648241
14
2.1
15
93
6
53
36
0
13
50
1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335