Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  333  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97446760--97446838
31
2.6
31
86
6
99
40
11
7
40
1.70
97446908--97446957
22
2.3
21
83
16
66
48
4
0
48
1.20
97446909--97446958
23
2.3
23
86
13
70
48
4
0
48
1.20
97450348--97450409
29
2.1
29
84
0
79
37
0
0
62
0.95
97451349--97451382
16
2.1
16
88
0
50
17
11
17
52
1.73
97459311--97459349
11
3.6
11
86
6
53
30
0
5
64
1.15
97461454--97461512
24
2.3
26
83
16
79
45
0
1
52
1.10
97466059--97466092
16
2.1
16
88
0
50
5
11
0
82
0.83
97466681--97466710
3
10.0
3
100
0
60
33
0
0
66
0.92
97467891--97467932
19
2.2
19
83
8
50
28
2
2
66
1.16
97470395--97470429
17
2.0
18
94
5
63
11
45
31
11
1.76
97475209--97475395
96
1.9
97
91
3
306
31
14
22
31
1.94
97475382--97475412
14
2.3
13
94
5
53
74
0
0
25
0.82
97476055--97476102
10
4.8
10
78
0
51
22
10
6
60
1.52
97476056--97476093
20
1.9
20
88
0
58
26
10
5
57
1.53
97477508--97477612
27
3.9
27
81
9
108
34
21
23
20
1.97
97478002--97478031
8
3.8
8
90
0
51
3
26
26
43
1.70
97479207--97479314
26
4.2
26
93
0
189
36
24
7
32
1.83
97489795--97489836
22
1.9
22
90
0
66
66
2
7
23
1.28
97490004--97490051
12
3.8
12
76
10
51
62
4
6
27
1.38
97490109--97490206
3
32.3
3
71
10
56
63
2
6
28
1.30
97490980--97491004
12
2.1
12
100
0
50
16
8
36
40
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97491193--97491712
44
12.0
44
75
12
409
26
25
17
30
1.97
97491280--97491486
80
2.5
82
90
7
312
24
25
17
31
1.97
97491377--97491666
132
2.2
132
94
0
517
26
24
18
30
1.98
97491192--97491710
132
4.0
132
78
11
511
26
25
17
30
1.97
97492039--97492163
61
2.0
64
89
7
195
36
12
17
32
1.88
97496503--97496549
19
2.5
20
89
6
71
42
8
21
27
1.81
97499329--97499370
22
1.9
22
85
9
59
66
2
9
21
1.32
97499538--97499585
12
3.8
12
76
10
51
62
4
6
27
1.38
97500513--97500537
12
2.1
12
100
0
50
16
8
36
40
1.77
97502932--97503022
45
2.0
45
93
0
155
38
8
14
38
1.77
97507064--97507259
94
2.1
94
98
0
374
37
12
27
23
1.90
97509190--97509303
44
2.6
43
83
6
140
30
20
19
29
1.97
97509131--97509322
44
4.2
45
70
15
126
33
18
20
27
1.96
97510676--97510754
33
2.4
33
100
0
158
35
8
21
34
1.85
97512040--97512621
44
12.9
43
78
7
453
33
16
20
30
1.94
97512041--97512529
183
2.7
179
82
6
531
33
15
20
30
1.94
97512040--97513683
94
17.6
89
75
11
628
34
17
19
28
1.95
97512636--97513053
187
2.2
186
86
3
568
31
19
20
28
1.97
97513019--97513683
45
14.1
46
73
13
254
36
17
17
28
1.93
97513306--97513526
51
4.5
51
81
6
283
35
19
17
27
1.94
97513303--97513584
147
2.0
141
88
4
420
37
17
18
26
1.93
97513392--97513699
89
3.4
89
86
3
346
38
18
15
26
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97513595--97513846
139
1.8
139
84
3
346
34
15
19
30
1.93
97514008--97514042
10
3.5
10
92
0
52
80
20
0
0
0.72
97514714--97514738
10
2.5
10
100
0
50
12
40
40
8
1.72
97516239--97516279
17
2.3
19
80
16
52
68
12
0
19
1.21
97516238--97516277
18
2.2
18
86
8
55
70
12
0
17
1.18
97516359--97516422
30
2.1
31
88
2
94
59
12
3
25
1.48
97527623--97527661
19
2.0
20
90
10
62
46
0
5
48
1.24
97527629--97527699
25
2.8
25
76
18
67
43
0
2
53
1.15
97527586--97527699
26
4.3
26
70
22
76
41
0
3
54
1.23
97536450--97536487
17
2.2
18
85
4
51
5
5
5
84
0.88
97537010--97537053
21
2.1
21
82
0
52
22
6
9
61
1.50
97537043--97537082
17
2.2
19
86
8
57
10
10
5
75
1.19
97543096--97543141
9
5.0
9
86
5
56
67
2
6
23
1.25
97544770--97544806
13
2.8
13
95
4
65
86
5
2
5
0.78
97545040--97545114
27
2.6
29
85
6
109
28
5
17
49
1.68
97545040--97545114
30
2.7
27
87
8
107
28
5
17
49
1.68
97545499--97545687
3
61.0
3
72
20
92
30
2
4
61
1.30
97545785--97545827
16
2.8
15
86
6
59
30
6
0
62
1.21
97545931--97545962
16
2.0
16
93
0
55
21
21
6
50
1.71
97545962--97546097
3
44.7
3
74
13
100
34
5
1
58
1.31
97546054--97546143
12
7.5
12
80
9
76
32
6
1
60
1.30
97546189--97546249
22
2.8
22
80
2
61
18
6
6
68
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97554703--97555881
205
5.8
205
94
1
2017
29
18
22
30
1.97
97554703--97555881
409
2.9
410
95
0
2110
29
18
22
30
1.97
97554703--97555881
614
1.9
614
93
1
2024
29
18
22
30
1.97
97555955--97556040
44
2.0
43
84
6
111
29
16
29
25
1.97
97556255--97556289
12
2.8
12
95
4
61
85
5
2
5
0.81
97556524--97556601
30
2.6
30
93
0
138
26
5
17
50
1.67
97556985--97557023
3
12.7
3
94
5
69
35
0
0
64
0.94
97557120--97557169
3
16.7
3
100
0
100
34
0
0
66
0.92
97557120--97557215
12
8.0
12
81
9
79
32
6
1
60
1.28
97557261--97557321
22
2.8
22
80
2
61
18
6
6
68
1.33
97559147--97559193
22
2.2
21
84
3
58
36
21
8
34
1.84
97559166--97559216
19
2.9
16
78
18
57
35
17
9
37
1.83
97559164--97559206
19
2.1
21
91
8
72
34
18
9
37
1.83
97559566--97559651
45
1.9
45
95
0
154
25
27
13
32
1.94
97559745--97560452
205
3.5
205
95
0
1276
28
22
19
29
1.98
97560445--97560537
44
2.1
44
91
0
150
27
29
12
30
1.93
97560525--97561007
88
5.5
88
79
10
477
25
25
18
29
1.98
97560481--97560919
132
3.3
132
93
0
736
26
25
17
29
1.98
97561909--97561949
18
2.4
17
84
15
57
4
17
0
78
0.93
97565614--97565643
16
1.9
16
93
6
53
6
20
16
56
1.62
97566168--97566236
36
1.9
36
96
0
129
47
21
5
24
1.72
97567538--97567587
19
2.6
19
100
0
100
40
32
4
24
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97569755--97569815
30
2.0
30
100
0
122
54
6
9
29
1.59
97570067--97570104
19
2.0
19
100
0
76
36
5
10
47
1.61
97576164--97576213
10
5.0
10
86
13
68
20
8
2
70
1.23
97581993--97582037
14
3.3
14
72
27
51
44
0
33
22
1.53
97583783--97583813
14
2.2
14
94
0
53
25
6
3
64
1.33
97586463--97586500
3
12.7
3
100
0
76
31
0
0
68
0.90
97588607--97588750
64
2.2
66
85
3
184
31
20
34
13
1.92
97588679--97589086
205
2.0
205
100
0
816
25
25
23
25
2.00
97589100--97589132
5
6.6
5
86
13
50
21
0
0
78
0.75
97589292--97589317
3
8.7
3
100
0
52
30
0
0
69
0.89
97592120--97592240
44
2.8
44
90
0
179
51
13
19
15
1.76
97592197--97592343
52
2.8
52
93
0
240
48
10
23
17
1.77
97593812--97594302
94
5.3
93
87
7
601
27
9
15
47
1.77
97593815--97594302
189
2.7
182
84
6
596
27
10
15
46
1.78
97595869--97595903
6
5.8
6
96
0
61
80
0
0
20
0.72
97595868--97595927
6
10.0
6
85
0
57
68
0
3
28
1.05
97596073--97596200
3
42.7
3
73
10
84
60
3
7
28
1.40
97596078--97596117
20
2.0
21
85
5
55
57
2
12
27
1.48
97596099--97596137
17
2.4
16
86
4
60
64
5
2
28
1.28
97596956--97596980
12
2.1
12
100
0
50
16
8
36
40
1.77
97597169--97597254
44
2.0
43
88
6
129
25
26
16
31
1.96
97597306--97598095
207
3.9
205
89
4
1200
29
22
18
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97610625--97610655
15
2.1
15
100
0
62
6
38
0
54
1.26
97615281--97615320
2
20.0
2
94
0
71
52
0
0
47
1.00
97616383--97616507
14
9.0
14
70
14
53
56
5
2
35
1.36
97616446--97616493
2
24.0
2
95
0
87
50
2
0
47
1.12
97616450--97616500
8
6.4
8
95
0
57
49
3
1
45
1.32
97616515--97616566
15
3.6
15
74
7
54
53
1
7
36
1.41
97617969--97618087
62
1.9
62
89
6
188
32
23
15
27
1.95
97618094--97618279
90
2.1
90
83
6
234
34
19
20
24
1.96
97618194--97618666
74
5.9
74
67
21
265
29
21
20
28
1.98
97618524--97618687
74
2.1
75
82
7
197
30
19
20
29
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335