genome.fa.s5.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  133  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39424952--39425015	29	2.1	29	85	5	83	34	1	28	35	1.67
39425427--39425470	20	2.1	21	87	8	63	27	4	2	65	1.23
39434685--39434714	2	15.0	2	100	0	60	50	0	0	50	1.00
39439266--39439332	30	2.2	31	86	7	93	26	2	5	64	1.31
39440166--39440208	18	2.5	17	82	14	52	32	0	2	65	1.06
39440158--39440217	17	3.4	17	77	13	59	33	1	1	63	1.14
39441901--39441971	27	2.8	25	78	16	76	38	2	0	59	1.12
39451463--39451488	3	8.7	3	100	0	52	69	0	0	30	0.89
39456349--39456431	44	1.9	43	92	2	139	49	1	3	45	1.27
39456395--39456428	18	1.9	17	88	5	50	58	0	0	41	0.98
39456926--39456962	2	18.5	2	100	0	74	48	0	0	51	1.00
39458203--39458247	22	2.0	22	91	0	72	33	2	15	48	1.57
39462802--39462846	22	2.0	22	91	0	72	33	2	15	48	1.57
39470446--39470491	21	2.2	21	100	0	92	58	13	0	28	1.35
39470446--39470498	21	2.5	21	93	0	79	56	15	0	28	1.39
39471630--39471669	20	2.0	20	100	0	80	35	35	5	25	1.78
39475743--39475779	6	6.3	6	90	3	58	48	0	51	0	1.00
39478365--39478391	2	13.5	2	100	0	54	48	0	0	51	1.00
39479822--39479889	32	2.1	32	81	10	77	22	4	17	55	1.59
39479885--39479957	32	2.5	27	76	19	83	26	4	19	50	1.65
39479898--39479958	32	1.9	32	93	0	104	27	4	18	49	1.68
39480940--39480988	22	2.2	22	92	0	80	28	4	20	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39480911--39481001	22	4.2	22	69	23	59	29	7	19	42	1.79
39481331--39481363	16	2.1	16	88	11	50	51	3	0	45	1.16
39481466--39481520	14	3.9	14	90	4	83	38	9	9	43	1.68
39481466--39481520	29	1.9	28	88	3	83	38	9	9	43	1.68
39482342--39482372	16	1.9	16	93	0	53	54	0	0	45	0.99
39483359--39483395	17	2.1	19	90	10	60	32	8	0	59	1.27
39483392--39483419	13	2.2	13	100	0	56	21	0	7	71	1.09
39483407--39483468	19	3.3	19	75	20	58	30	0	6	62	1.20
39483581--39483623	23	1.9	22	86	13	61	44	23	6	25	1.78
39491548--39491588	21	2.0	21	85	0	55	34	7	4	53	1.50
39492327--39492521	46	4.2	46	93	0	318	22	24	13	40	1.90
39492403--39492474	21	3.2	21	66	21	56	23	26	12	37	1.90
39492378--39492453	25	3.2	25	64	21	63	19	23	15	40	1.90
39496288--39496497	40	5.2	40	88	2	305	21	28	24	25	1.99
39498814--39499016	101	2.0	101	90	1	318	29	23	15	31	1.96
39502014--39502176	50	3.2	49	91	2	236	36	12	22	28	1.91
39502166--39502277	31	3.6	31	77	4	118	30	17	25	25	1.98
39505184--39505214	16	2.0	15	93	6	53	90	0	9	0	0.46
39509706--39509750	23	2.0	23	90	0	72	6	22	0	71	1.09
39515171--39515198	5	5.6	5	100	0	56	39	0	0	60	0.97
39537115--39537153	2	19.5	2	94	0	69	48	0	2	48	1.15
39537486--39537521	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39545517--39545545	13	2.2	13	100	0	58	34	0	24	41	1.55
39547890--39547948	31	1.9	31	100	0	118	37	20	27	15	1.92
39549276--39549614	49	7.0	48	75	4	214	35	16	25	22	1.95
39549905--39549978	36	2.1	36	97	0	139	25	5	27	41	1.77
39550572--39550629	30	2.0	29	83	16	75	18	41	0	39	1.51
39550944--39551117	86	2.0	86	96	0	321	38	8	5	47	1.58
39551361--39551391	10	3.1	10	90	0	53	16	19	19	45	1.86
39553721--39553774	17	3.2	17	81	5	65	66	0	0	33	0.92
39554298--39554324	3	9.0	3	100	0	54	66	0	0	33	0.92
39556195--39556334	70	2.0	69	95	1	253	44	3	4	47	1.40
39557533--39557593	31	2.0	31	83	6	79	31	9	16	42	1.81
39558969--39559005	16	2.4	16	86	8	51	48	8	8	35	1.62
39560022--39560054	2	16.5	2	100	0	66	51	0	0	48	1.00
39561653--39561711	29	2.0	30	86	3	84	28	5	13	52	1.61
39563853--39564017	36	4.8	36	70	11	110	30	20	13	35	1.91
39566626--39566742	41	2.9	41	87	2	155	32	16	11	39	1.85
39567596--39567634	17	2.3	18	86	13	64	0	30	0	69	0.89
39567855--39567885	8	3.9	8	100	0	62	61	0	0	38	0.96
39570191--39570299	26	4.2	26	91	1	175	33	5	23	36	1.78
39572072--39572339	134	2.0	135	97	2	504	24	18	25	31	1.98
39576287--39576316	13	2.2	14	94	5	53	60	0	0	40	0.97
39577554--39577614	31	2.0	31	83	6	79	31	9	16	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39578986--39579022	16	2.4	16	86	8	51	48	8	8	35	1.62
39580031--39580070	2	19.5	2	94	5	71	50	2	0	47	1.14
39581669--39581727	29	2.0	30	86	3	84	28	5	13	52	1.61
39583869--39584033	36	4.8	36	70	11	110	30	20	13	35	1.91
39586642--39586752	40	2.8	40	87	2	152	32	17	12	37	1.87
39587613--39587651	17	2.3	18	86	13	64	0	30	0	69	0.89
39587872--39587902	8	3.9	8	100	0	62	61	0	0	38	0.96
39590209--39590318	26	4.2	26	92	0	175	33	5	23	37	1.78
39592100--39592374	136	2.0	137	97	0	525	25	19	24	31	1.98
39595599--39595623	13	1.9	13	100	0	50	52	0	0	48	1.00
39595913--39595943	9	3.4	9	95	0	53	45	6	9	38	1.63
39601117--39601148	16	2.0	16	93	0	55	46	6	0	46	1.27
39605031--39605205	46	3.8	46	76	10	185	29	29	19	21	1.97
39605038--39605210	93	1.9	93	91	2	285	28	30	19	21	1.98
39609372--39609397	2	13.0	2	100	0	52	50	0	0	50	1.00
39610800--39610856	21	2.7	21	73	10	55	42	10	5	42	1.62
39614366--39614403	20	2.0	20	94	5	69	18	26	26	28	1.98
39614961--39615083	51	2.4	52	85	6	162	25	21	12	41	1.87
39617680--39617722	22	2.0	22	90	0	68	74	2	2	20	1.04
39618436--39618504	30	2.3	30	85	5	86	52	15	26	5	1.66
39618466--39618518	20	2.7	19	78	13	63	54	13	28	3	1.56
39618491--39618524	14	2.3	15	85	5	52	52	11	29	5	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39625263--39625323	29	2.1	29	87	0	86	14	31	14	39	1.87
39627239--39627311	37	2.0	37	100	0	146	49	19	17	13	1.80
39627467--39627495	14	2.0	15	93	6	51	31	0	0	68	0.89
39627673--39627713	14	3.0	14	89	3	57	65	4	4	24	1.32
39628336--39628379	21	2.0	22	86	4	63	15	4	9	70	1.30
39628984--39629042	30	2.1	27	81	12	66	52	3	0	44	1.17
39631997--39632038	23	1.9	21	90	9	66	9	9	4	76	1.15
39631997--39632044	9	6.0	8	77	18	55	10	10	4	75	1.18
39632086--39632123	18	2.1	18	90	0	58	18	5	0	76	0.97
39632140--39632205	22	2.9	22	77	11	62	42	1	6	50	1.36
39632215--39632273	13	4.2	13	72	19	55	42	0	0	57	0.98
39632228--39632286	20	3.1	19	88	9	84	40	0	0	59	0.97
39632209--39632275	7	10.1	7	72	16	54	40	0	1	58	1.07
39632160--39632268	31	3.2	32	85	11	130	39	0	1	57	1.15
39632214--39632282	31	2.2	31	84	0	84	42	0	0	57	0.98
39632333--39632378	24	1.9	24	82	8	58	34	0	4	60	1.16
39632883--39633067	84	2.2	86	86	1	257	28	20	27	23	1.99
39632883--39633044	43	3.8	43	90	3	247	28	19	29	22	1.98
39633443--39633488	21	2.2	21	84	0	56	2	50	19	28	1.60
39639123--39639348	9	24.6	9	75	9	143	38	0	12	47	1.48
39639123--39639348	18	12.3	18	76	9	161	38	0	12	47	1.48
39639176--39639348	27	6.2	27	77	10	159	38	1	13	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39639099--39639320	114	1.9	114	86	3	313	38	0	12	47	1.48
39639681--39639748	24	2.8	24	86	8	102	45	7	19	27	1.76
39644289--39644377	3	29.7	3	100	0	178	32	0	0	67	0.91
39644418--39644471	28	2.0	27	82	10	65	37	5	1	55	1.34
39644631--39644676	12	4.2	11	84	15	60	45	8	0	45	1.34
39645180--39645562	153	2.5	152	90	2	599	27	20	20	31	1.98
39650228--39650306	35	2.3	35	82	2	97	26	11	13	48	1.77
39652180--39652213	14	2.3	15	90	5	52	76	14	0	8	1.01
39653675--39653713	21	1.9	21	94	5	71	25	2	7	64	1.33
39655188--39655251	29	2.4	26	82	12	76	54	3	0	42	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335