Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  153  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44934716--44934744
12
2.3
13
94
5
51
48
0
17
34
1.47
44935948--44935989
16
2.6
16
78
14
59
54
0
0
45
0.99
44935964--44936007
11
3.9
11
80
14
54
47
0
0
52
1.00
44937034--44937142
33
3.4
31
72
22
100
46
8
29
15
1.75
44939905--44939947
17
2.5
17
85
11
52
67
4
2
25
1.22
44940039--44940064
1
26.0
1
100
0
52
100
0
0
0
0.00
44941461--44941572
28
3.9
28
65
23
70
53
0
2
42
1.21
44943633--44943689
30
1.9
30
82
7
71
54
1
3
40
1.28
44945491--44945562
36
2.0
36
83
5
92
27
15
27
29
1.96
44947186--44947234
3
16.3
3
95
0
89
30
0
2
67
1.02
44955885--44955923
21
1.9
20
89
5
60
38
12
2
46
1.56
44965188--44965256
28
2.5
28
90
4
106
26
14
28
30
1.95
44968908--44968934
2
13.5
2
100
0
54
48
0
0
51
1.00
44969615--44969675
29
2.1
29
81
0
68
1
18
3
77
0.99
44973767--44973913
37
4.0
37
86
0
206
23
29
19
27
1.98
44973954--44974385
48
9.0
48
94
0
720
31
26
6
35
1.81
44977076--44977285
40
5.2
40
88
2
305
21
28
24
25
1.99
44984574--44984704
29
4.6
29
86
1
156
24
31
15
29
1.95
44984595--44984703
57
1.9
57
88
0
164
24
30
14
30
1.95
44985345--44985639
143
2.1
141
98
1
563
38
29
10
21
1.87
44992516--44992648
29
4.7
28
84
7
135
23
31
15
30
1.95
44992491--44992648
56
2.8
58
77
3
158
23
33
15
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44992567--44992649
29
2.9
29
96
0
148
25
31
14
28
1.95
44993293--44993587
143
2.1
141
98
1
563
38
29
10
21
1.87
44994888--44995030
39
3.7
39
87
2
216
27
20
28
23
1.99
44996330--44996525
62
3.2
62
81
5
245
22
25
25
27
2.00
44997078--44997103
7
3.7
7
100
0
52
76
0
23
0
0.78
45000770--45001064
143
2.1
141
98
1
563
21
10
29
38
1.87
45001708--45001829
29
4.2
29
89
0
154
31
15
28
23
1.95
45008729--45009023
143
2.1
141
98
1
563
21
10
29
38
1.87
45009668--45009789
29
4.2
29
89
0
154
31
15
28
23
1.95
45013140--45013175
18
2.0
18
94
0
63
25
11
13
50
1.75
45013491--45013527
2
18.5
2
100
0
74
48
0
0
51
1.00
45017040--45017087
20
2.5
20
76
13
55
35
6
0
58
1.23
45020137--45020188
10
5.1
10
80
2
59
25
3
1
69
1.16
45020868--45020948
39
2.1
39
88
6
119
24
12
3
59
1.49
45022288--45022340
26
2.1
26
86
13
76
41
0
0
58
0.98
45022267--45022346
26
3.0
27
75
18
69
42
2
1
53
1.22
45025436--45025464
3
10.0
3
92
7
51
65
0
34
0
0.93
45025436--45025462
14
1.9
14
100
0
54
66
0
33
0
0.92
45026291--45026338
25
1.9
25
83
8
62
56
0
10
33
1.34
45028063--45028112
26
1.9
26
84
8
66
42
2
16
40
1.59
45028626--45028667
17
2.7
15
80
16
50
69
0
2
28
1.01
45029116--45029222
17
6.4
17
65
13
51
57
1
0
40
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45032246--45032403
25
6.3
26
74
10
114
22
27
18
31
1.97
45032238--45032332
50
1.9
50
84
4
129
21
28
17
32
1.96
45032263--45032403
75
1.9
75
82
8
180
21
28
19
30
1.98
45032226--45032353
50
2.6
49
75
8
123
19
28
19
32
1.96
45035557--45035670
33
3.5
33
80
7
133
31
23
11
33
1.90
45038842--45038875
15
2.3
15
90
5
52
50
5
5
38
1.51
45039723--45039758
13
2.8
13
95
0
63
41
19
8
30
1.81
45040399--45040433
14
2.5
14
90
0
52
28
11
25
34
1.91
45041522--45041721
99
2.0
99
100
0
400
32
30
17
21
1.95
45043643--45043845
82
2.5
82
95
0
363
49
14
6
28
1.69
45043922--45044325
159
2.5
157
81
7
449
33
12
16
37
1.87
45043922--45044394
159
3.0
156
77
11
446
32
12
16
38
1.86
45046677--45046762
39
2.2
39
91
0
136
26
50
3
19
1.64
45049194--45049237
19
2.3
19
84
4
52
29
2
4
63
1.26
45051056--45051098
19
2.2
20
84
15
56
11
9
0
79
0.95
45051075--45051208
58
2.3
58
76
13
130
23
6
3
65
1.33
45054786--45054832
19
2.5
19
86
6
60
25
19
10
44
1.82
45063216--45063885
44
14.6
44
69
14
284
33
17
18
30
1.94
45063259--45063530
94
2.9
95
87
1
393
33
16
19
30
1.94
45063449--45063885
183
2.4
183
82
6
492
33
16
19
30
1.94
45063449--45063885
89
4.8
89
74
8
311
33
16
19
30
1.94
45063626--45063859
96
2.5
96
82
4
257
33
17
20
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45071570--45071607
19
2.0
19
100
0
76
26
15
0
57
1.38
45071613--45071677
32
2.0
32
96
0
121
33
24
6
35
1.80
45072865--45072902
19
2.0
20
94
5
69
21
23
2
52
1.59
45076482--45076509
8
3.5
8
100
0
56
28
0
10
60
1.30
45076990--45077033
21
2.2
20
83
4
52
61
4
4
29
1.36
45089085--45089218
25
5.4
25
96
0
207
28
12
11
47
1.76
45089172--45089217
12
3.7
13
74
8
51
30
13
6
50
1.66
45089086--45089234
25
6.0
25
95
0
192
27
14
10
47
1.76
45089086--45089234
50
3.0
50
91
1
219
27
14
10
47
1.76
45089494--45089523
2
15.5
2
93
6
53
50
0
0
50
1.00
45090043--45090263
45
5.0
45
90
3
308
23
21
27
28
1.99
45095662--45095724
30
2.1
30
91
5
101
25
4
11
58
1.51
45096856--45096912
28
2.0
28
96
0
105
29
29
8
31
1.87
45099745--45099809
29
2.2
29
83
5
78
30
9
10
49
1.69
45115545--45115717
46
3.8
45
78
10
188
23
20
26
30
1.98
45115541--45115712
93
1.8
93
93
0
299
23
20
27
29
1.99
45119298--45119338
19
2.1
20
86
4
57
39
19
4
36
1.73
45120854--45120899
16
2.9
16
90
3
67
0
17
0
82
0.67
45120853--45120898
23
2.0
23
87
8
67
0
19
0
80
0.71
45121024--45121065
19
2.1
21
86
8
61
30
7
4
57
1.47
45126195--45126233
18
2.2
17
86
4
51
53
7
0
38
1.30
45128247--45128290
17
2.5
18
88
7
72
0
22
0
77
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45128254--45128284
9
3.6
9
91
8
55
0
19
0
80
0.71
45129982--45130055
26
2.9
26
85
2
105
18
27
22
31
1.98
45130162--45130221
25
2.4
25
80
5
68
23
28
20
28
1.99
45132749--45132794
20
2.3
20
88
0
65
34
15
26
23
1.94
45132749--45132795
10
4.7
10
83
0
58
34
14
27
23
1.94
45134841--45134923
30
2.7
31
74
5
89
14
21
1
62
1.38
45134899--45134923
12
2.1
12
100
0
50
8
16
0
76
1.02
45134992--45135048
5
11.0
5
76
14
53
1
15
3
78
0.96
45134996--45135044
26
1.9
25
84
12
64
2
14
4
79
0.97
45135005--45135059
20
2.7
20
78
18
60
0
16
5
78
0.93
45135967--45136018
11
4.7
11
85
7
61
15
5
5
73
1.22
45135968--45136017
10
4.7
10
85
9
64
16
6
6
72
1.25
45137626--45137672
10
4.7
10
83
0
58
34
17
27
21
1.95
45137626--45137671
20
2.3
20
92
0
74
34
17
26
21
1.95
45145856--45145898
23
2.0
23
86
9
63
48
9
0
41
1.35
45151260--45151430
93
1.8
93
94
0
306
21
22
29
27
1.99
45151264--45151435
46
3.7
46
79
13
208
21
22
28
27
1.99
45156072--45156235
71
2.3
71
97
0
310
18
28
18
34
1.95
45156072--45156269
71
2.8
70
90
3
249
20
28
17
32
1.96
45158163--45158313
40
3.8
40
77
11
132
26
23
27
22
2.00
45158200--45158329
40
3.2
40
77
4
138
24
23
27
23
2.00
45160400--45160790
196
2.0
196
96
0
719
46
24
7
22
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45164396--45164498
29
3.6
29
92
2
154
26
15
32
26
1.96
45180738--45180783
20
2.3
20
100
0
92
34
30
0
34
1.58
45198157--45198200
15
2.9
15
82
0
61
11
18
13
56
1.66
45201228--45201313
45
1.9
44
86
6
120
25
11
25
37
1.90
45204799--45204855
30
1.9
30
85
7
80
42
10
10
36
1.74
45205458--45205632
90
1.9
90
94
0
305
23
17
22
36
1.95
45211824--45211977
42
3.6
44
74
15
151
23
13
28
34
1.93
45211821--45211977
86
1.8
85
84
9
212
22
13
28
35
1.92
45222174--45222258
42
2.0
42
97
0
161
27
14
8
50
1.70
45224976--45225112
68
2.0
68
98
0
265
24
18
19
37
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335