Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  126  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37908214--37908311
29
3.2
29
76
13
99
63
2
11
23
1.38
37908229--37908315
41
2.1
42
82
6
106
64
1
10
24
1.32
37908406--37908455
14
3.8
14
75
22
54
60
0
10
30
1.30
37908500--37908552
18
2.7
21
83
11
60
60
0
11
28
1.31
37908829--37908880
25
2.1
24
82
3
59
13
23
9
53
1.68
37913149--37913188
20
2.0
20
85
0
53
47
0
2
50
1.14
37914176--37914358
94
1.9
96
87
6
275
45
11
15
26
1.80
37917139--37917173
6
5.8
6
86
0
52
14
45
0
40
1.45
37917126--37917173
24
2.0
24
87
0
69
12
41
4
41
1.62
37919431--37919478
20
2.5
19
77
12
53
54
4
2
39
1.32
37919582--37919621
21
2.0
21
85
14
57
60
2
0
37
1.11
37937138--37937259
28
4.5
28
74
9
108
22
24
15
37
1.93
37938371--37938424
3
18.0
3
100
0
108
33
0
0
66
0.92
37939812--37939845
13
2.7
13
90
4
52
73
5
2
17
1.16
37939915--37939967
23
2.3
23
78
12
56
58
1
3
35
1.27
37940690--37940718
2
15.0
2
92
7
51
48
0
0
51
1.00
37941323--37941353
3
10.3
3
100
0
62
32
0
0
67
0.91
37942725--37942766
21
2.0
22
85
4
59
38
11
4
45
1.62
37946041--37946124
42
2.0
42
100
0
168
38
9
19
33
1.84
37946181--37946229
25
2.0
25
84
11
66
32
2
0
65
1.04
37946571--37946611
15
2.6
16
88
7
57
68
2
0
29
1.03
37947722--37947811
9
9.6
9
72
11
65
70
1
3
25
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37947716--37947784
19
3.7
19
77
11
72
69
1
2
26
1.11
37947723--37947811
28
3.1
28
79
9
90
70
1
3
24
1.09
37947716--37947811
38
2.6
36
78
17
97
69
1
3
26
1.09
37948013--37948083
37
1.9
37
85
5
99
32
2
2
61
1.24
37953565--37953646
17
4.8
18
72
13
66
41
18
7
32
1.78
37953565--37953656
34
2.6
35
80
14
102
41
19
6
32
1.77
37954696--37954726
15
2.1
15
100
0
62
67
6
6
19
1.35
37960675--37960715
13
3.1
14
82
10
59
19
14
14
51
1.77
37961453--37961533
41
2.0
41
100
0
162
22
17
24
35
1.95
37961696--37961801
49
2.1
49
87
1
149
46
4
23
25
1.72
37962207--37962278
33
2.2
32
82
12
83
48
16
4
30
1.65
37962211--37962299
35
2.5
36
76
12
94
48
12
3
35
1.58
37964978--37965012
17
2.0
18
88
5
54
11
25
45
17
1.81
37969356--37969401
23
2.0
23
84
12
60
45
10
6
36
1.65
37969363--37969407
23
2.0
23
82
8
56
40
13
8
37
1.76
37974771--37974831
18
3.4
18
79
0
68
31
13
11
44
1.79
37974754--37974831
36
2.2
36
78
0
84
33
12
12
41
1.82
37982789--37982827
19
2.1
19
100
0
78
48
15
5
30
1.66
37983316--37983340
9
2.8
9
100
0
50
64
0
12
24
1.27
37983837--37984033
64
3.1
64
87
2
245
31
11
20
36
1.88
37992778--37992832
3
19.0
3
96
3
96
30
0
0
69
0.89
37993144--37993403
41
6.3
42
88
4
192
33
24
25
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37993144--37993428
82
3.5
82
84
5
335
32
24
24
18
1.97
37993209--37993428
41
5.4
41
92
2
379
30
25
25
18
1.98
37994424--37994455
15
2.1
15
94
0
55
59
0
9
31
1.29
37994427--37994494
24
2.8
24
76
10
75
57
0
4
38
1.19
37998348--37999054
289
2.4
290
99
0
1407
36
13
13
36
1.84
37999265--37999319
15
3.7
15
77
20
62
45
1
0
52
1.11
37999425--37999693
9
29.4
9
77
8
195
47
13
0
38
1.48
37999424--37999693
18
15.3
18
77
9
216
47
13
0
38
1.48
37999424--37999640
27
7.9
27
81
8
231
46
13
0
38
1.50
37999496--37999717
114
1.9
114
86
3
313
47
12
0
38
1.48
37999645--37999743
43
2.3
45
81
10
125
47
13
1
38
1.49
38003928--38003968
21
2.0
21
85
0
55
82
2
9
4
0.89
38008705--38008771
31
2.2
31
83
0
80
17
4
17
59
1.53
38008846--38009183
43
7.8
43
94
1
568
24
32
18
24
1.97
38008846--38009183
87
3.9
86
94
1
586
24
32
18
24
1.97
38008846--38009183
130
2.6
129
94
0
595
24
32
18
24
1.97
38008846--38009177
173
1.9
173
96
0
610
25
32
18
23
1.97
38009316--38009448
64
2.1
64
86
0
185
33
15
18
33
1.92
38013413--38013474
24
2.6
24
82
5
63
64
1
1
32
1.13
38013415--38013518
53
1.9
53
86
5
147
66
1
1
29
1.13
38023351--38023407
14
3.9
15
72
9
55
19
17
5
57
1.58
38023366--38023425
28
2.1
28
84
0
75
25
20
5
50
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38023546--38023652
52
2.1
52
85
7
146
39
2
7
50
1.45
38023790--38023835
22
2.1
23
84
8
60
36
0
4
58
1.18
38028925--38028959
16
2.2
16
90
10
54
51
2
0
45
1.16
38030480--38030534
18
2.9
19
81
10
60
52
5
0
41
1.24
38030480--38030529
19
2.5
20
81
12
59
54
6
0
40
1.25
38031034--38031091
28
2.0
29
87
9
84
72
0
13
13
1.13
38035503--38036125
311
2.0
311
98
0
1192
32
18
21
26
1.97
38038630--38038668
18
2.2
18
95
0
69
48
17
5
28
1.68
38039707--38039938
73
3.1
73
82
5
263
29
17
19
33
1.95
38039866--38040027
87
1.8
89
84
7
224
32
19
21
26
1.97
38039945--38040097
75
2.0
76
85
1
209
29
18
21
30
1.97
38040077--38040111
14
2.5
14
95
0
61
25
11
0
62
1.28
38040002--38040324
88
3.7
88
75
6
271
29
15
17
37
1.91
38039780--38040186
162
2.5
163
79
6
461
30
17
19
32
1.95
38040516--38040611
44
2.2
44
86
3
140
45
19
13
20
1.84
38042026--38042076
3
17.3
3
95
4
95
35
0
0
64
0.94
38042237--38042291
23
2.3
25
75
12
62
29
7
10
52
1.63
38042448--38042531
24
3.3
26
78
11
68
33
10
3
52
1.53
38042654--38042692
2
19.5
2
100
0
78
48
0
0
51
1.00
38044045--38044084
21
1.9
21
84
0
53
27
10
10
52
1.66
38049379--38049457
29
2.5
31
76
12
81
37
6
10
45
1.63
38052003--38052049
24
2.0
22
84
8
58
46
0
2
51
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38055159--38055242
28
3.2
28
65
25
83
23
16
29
29
1.96
38055111--38055286
50
3.5
49
85
3
217
26
17
27
29
1.97
38057651--38057701
10
5.0
10
77
13
50
11
23
19
45
1.83
38066909--38067011
50
2.1
50
100
0
206
33
11
13
40
1.81
38069752--38069791
21
1.9
21
89
0
62
52
5
30
12
1.60
38070845--38070897
21
2.4
23
81
6
65
39
0
7
52
1.30
38072966--38072994
14
2.1
14
93
6
51
58
0
0
41
0.98
38073838--38073864
10
2.7
10
100
0
54
11
18
7
62
1.50
38077704--38077750
4
11.8
4
78
17
53
0
25
2
72
0.96
38077692--38077743
20
2.7
19
77
16
61
0
25
3
71
1.03
38077695--38077762
29
2.4
28
76
11
75
1
23
2
72
1.07
38079613--38079844
70
3.1
70
66
15
196
20
14
34
30
1.93
38079523--38079851
152
2.2
152
97
1
624
19
15
34
29
1.93
38084516--38084551
12
3.0
12
87
0
54
25
27
5
41
1.77
38084524--38084555
16
1.9
17
93
6
57
25
28
6
40
1.79
38093031--38093167
72
1.9
71
90
1
220
21
13
24
40
1.90
38093103--38093444
140
2.4
140
96
0
621
25
16
21
36
1.94
38093325--38093877
190
2.9
190
95
2
952
27
16
23
32
1.96
38093731--38094276
75
7.3
75
87
4
737
30
17
20
32
1.95
38094198--38094371
95
1.8
95
81
4
217
28
19
19
32
1.96
38094104--38094533
172
2.6
168
88
4
643
27
19
19
33
1.96
38094270--38094437
77
2.1
77
85
4
228
29
19
19
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38094351--38094604
91
2.8
90
80
4
282
26
18
19
35
1.95
38095194--38095288
32
3.0
31
90
4
145
75
14
4
5
1.13
38095194--38095286
31
3.0
31
87
10
136
75
15
4
5
1.14
38096017--38096045
3
9.7
3
100
0
58
34
0
0
65
0.93
38096066--38097410
692
1.9
692
98
0
2609
30
15
12
40
1.84
38100055--38100099
22
2.1
21
84
8
56
26
0
8
64
1.23
38100779--38100830
20
2.6
20
81
6
61
50
21
9
19
1.76
38104174--38104226
21
2.6
20
76
5
52
15
20
18
45
1.85
38104452--38104476
13
1.9
13
100
0
50
32
0
4
64
1.12
38106532--38106585
16
3.2
17
77
15
51
35
1
3
59
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335