Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  317  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93398614--93398748
39
3.4
38
73
8
101
28
28
20
23
1.99
93398988--93399026
18
2.1
19
90
4
62
48
10
0
41
1.37
93400341--93400392
5
10.0
5
80
15
61
57
1
0
40
1.10
93400340--93400394
12
4.5
12
81
18
69
56
1
0
41
1.10
93402764--93404499
228
7.6
227
84
2
1354
23
25
21
30
1.99
93402677--93404453
683
2.6
682
79
3
1782
23
25
21
29
1.99
93408276--93408363
44
2.0
44
100
0
176
50
11
18
20
1.77
93408695--93409982
228
5.6
228
82
2
1052
23
25
21
30
1.99
93408615--93409936
456
2.9
456
81
1
1416
23
25
21
29
1.99
93412473--93412581
57
1.9
57
100
0
218
52
16
3
27
1.61
93413374--93413417
23
2.0
21
82
8
52
34
4
2
59
1.30
93415138--93416434
228
5.7
228
84
2
1077
21
26
21
29
1.99
93424429--93424453
13
1.9
13
100
0
50
32
0
8
60
1.26
93435713--93435767
27
2.0
27
96
0
101
27
21
23
27
1.99
93440652--93440685
17
1.9
18
94
5
61
26
11
5
55
1.58
93440992--93441056
31
2.1
32
97
2
123
21
12
12
53
1.70
93441431--93441455
12
2.1
12
100
0
50
36
24
8
32
1.84
93446104--93446143
13
3.0
13
92
3
62
70
2
0
27
1.01
93448679--93448711
2
16.5
2
100
0
66
48
0
0
51
1.00
93449633--93449706
24
3.2
21
73
16
58
21
4
9
64
1.39
93453440--93453711
40
7.0
39
67
15
152
29
21
23
25
1.99
93453453--93453822
154
2.4
153
84
5
498
30
20
22
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93453453--93453822
155
2.4
154
86
4
462
30
20
22
27
1.98
93454744--93454788
8
5.6
8
100
0
90
53
0
0
46
1.00
93454784--93454857
7
10.4
7
97
2
139
86
0
0
13
0.57
93454784--93454867
29
2.9
29
91
3
134
82
1
0
16
0.74
93454784--93454857
1
74.0
1
72
0
58
86
0
0
13
0.57
93454980--93455022
18
2.4
18
88
0
59
67
2
4
25
1.22
93455759--93455894
26
5.2
26
94
0
236
33
5
25
36
1.78
93458939--93458977
18
2.2
18
90
0
60
51
5
5
38
1.46
93483554--93483598
7
6.3
7
80
14
56
73
0
0
26
0.84
93483556--93483598
13
3.2
13
84
15
52
72
0
0
27
0.85
93485214--93485248
15
2.4
14
86
13
52
82
0
0
17
0.66
93486997--93487040
3
14.7
3
100
0
88
34
0
0
65
0.93
93497698--93497917
72
3.0
72
89
4
291
29
15
19
35
1.92
93497835--93498249
90
4.8
87
81
11
437
26
17
20
35
1.94
93498007--93498172
76
2.2
76
88
3
246
28
18
19
33
1.95
93498161--93498195
17
2.1
17
88
0
52
17
8
2
71
1.23
93497780--93498249
255
1.9
250
88
5
712
27
17
20
34
1.95
93498177--93498330
70
2.2
72
82
6
197
27
16
20
36
1.93
93498321--93498356
18
2.0
18
94
0
63
19
8
0
72
1.10
93497938--93498665
163
4.5
163
90
4
1089
27
16
19
36
1.93
93498360--93498501
71
2.0
71
86
2
196
28
16
21
33
1.95
93498485--93498520
17
2.1
17
89
0
54
16
8
2
72
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93498523--93498715
70
2.6
74
87
8
261
31
17
22
29
1.96
93500082--93501131
73
13.3
75
76
14
720
28
16
20
34
1.94
93500096--93501114
148
6.4
148
74
15
614
28
16
21
33
1.95
93500531--93500565
14
2.5
14
90
0
52
17
14
5
62
1.49
93500452--93500902
91
5.0
90
77
11
428
28
15
19
37
1.91
93500620--93500653
16
2.1
16
88
0
50
17
8
2
70
1.25
93500474--93501366
180
5.3
169
76
15
590
28
15
21
34
1.94
93500815--93501085
75
3.7
72
84
8
348
30
14
21
33
1.92
93501035--93501207
93
1.9
90
92
3
292
26
16
19
37
1.93
93500156--93501366
658
1.8
646
81
9
1462
28
16
21
34
1.94
93501408--93501530
63
2.0
63
83
3
158
30
17
25
26
1.98
93501830--93501873
23
1.9
23
95
0
79
43
36
0
20
1.52
93503006--93503185
3
58.7
3
70
13
75
31
3
5
58
1.39
93503106--93503154
14
3.5
15
86
8
50
32
6
0
61
1.21
93503181--93503250
21
3.3
21
80
13
81
27
11
0
61
1.30
93503383--93503412
15
1.9
16
93
6
53
33
0
0
66
0.92
93503354--93503418
29
2.1
30
83
8
78
32
3
1
63
1.19
93503631--93503679
24
2.1
23
84
3
62
38
4
4
53
1.39
93503640--93503685
23
2.0
24
82
4
58
39
6
2
52
1.40
93503749--93503842
26
3.7
26
81
1
100
29
7
6
56
1.52
93503820--93503873
21
2.7
20
80
11
56
31
9
7
51
1.61
93524335--93524376
2
21.0
2
100
0
84
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93526107--93526149
16
2.8
15
86
6
59
30
6
0
62
1.21
93526254--93526285
16
2.0
16
93
0
55
21
21
6
50
1.71
93526297--93526522
3
77.3
3
70
14
125
30
6
2
60
1.36
93526361--93526522
31
5.5
31
72
16
114
30
4
2
62
1.29
93526367--93526519
25
5.7
27
72
17
106
30
5
2
62
1.31
93530316--93530399
26
3.2
26
96
0
150
33
4
25
36
1.77
93532179--93532462
135
2.1
136
95
0
516
24
18
25
32
1.97
93536173--93536308
26
5.2
26
94
0
236
33
5
25
36
1.78
93538093--93538374
132
2.1
136
94
3
500
24
18
25
31
1.97
93538173--93538381
64
3.2
62
65
21
149
24
20
25
29
1.99
93539828--93540059
88
2.6
88
91
0
367
26
17
28
26
1.98
93539831--93539972
41
3.3
41
64
21
101
27
17
28
26
1.98
93539870--93540019
47
3.3
47
62
17
109
27
17
27
28
1.98
93540046--93541385
44
30.5
44
75
8
1122
31
18
24
26
1.97
93540049--93541342
132
9.8
132
92
1
2139
31
18
23
26
1.98
93542071--93542152
26
3.2
26
87
0
128
34
8
23
34
1.85
93543612--93543652
15
2.5
17
84
7
50
48
43
4
2
1.37
93543711--93543781
13
5.8
13
79
12
87
38
52
0
9
1.35
93543705--93543792
35
2.5
35
92
3
142
35
53
0
11
1.37
93544158--93544199
19
2.3
18
87
4
57
26
2
2
69
1.13
93548518--93548560
16
2.8
15
86
6
59
30
6
0
62
1.21
93548769--93548924
3
53.7
3
73
12
112
30
5
2
62
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93548841--93548929
31
3.0
29
78
18
96
28
4
2
65
1.24
93551433--93551473
20
2.1
19
86
13
57
39
4
0
56
1.21
93555509--93555557
26
1.9
25
83
4
62
12
2
6
79
0.99
93556834--93556872
20
1.9
21
84
5
53
53
0
7
38
1.30
93556861--93556907
17
2.7
18
83
9
53
48
0
4
46
1.21
93556958--93556996
17
2.4
16
82
4
51
69
0
0
30
0.89
93560092--93560256
81
2.0
81
92
0
276
41
15
16
26
1.88
93568551--93568670
54
2.1
54
86
10
159
39
10
1
48
1.48
93568673--93568715
16
2.8
16
79
10
54
48
30
0
20
1.50
93573035--93573066
15
2.1
15
94
0
55
68
9
6
15
1.36
93579123--93579184
27
2.3
27
91
2
97
22
4
19
53
1.64
93579659--93579687
3
9.7
3
100
0
58
34
0
0
65
0.93
93579896--93579938
16
2.8
15
86
6
59
30
6
0
62
1.21
93580042--93580073
16
2.0
16
93
0
55
21
21
6
50
1.71
93580085--93580116
13
2.6
13
90
9
50
25
6
3
65
1.31
93580284--93580343
22
2.8
21
80
5
59
18
6
6
68
1.35
93580293--93580347
19
2.8
20
77
17
62
18
5
7
69
1.32
93580073--93580299
3
75.3
3
67
15
94
31
7
2
57
1.41
93584091--93584117
14
1.9
14
100
0
54
48
7
0
44
1.31
93584233--93584262
15
2.0
15
100
0
60
53
6
33
6
1.53
93592238--93592291
25
2.2
24
81
18
67
51
0
48
0
1.00
93593830--93593894
21
2.8
24
71
21
66
52
1
13
32
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93594545--93594627
6
13.3
6
69
15
53
4
21
1
72
1.10
93594555--93594627
28
2.8
26
72
18
71
4
23
1
71
1.11
93594583--93594621
14
2.8
14
88
7
53
5
25
0
69
1.09
93597210--93597259
24
2.1
24
96
0
91
46
28
6
20
1.74
93598860--93598885
6
4.3
6
100
0
52
15
15
19
50
1.79
93601925--93602001
23
3.5
22
76
5
75
49
1
5
44
1.33
93603076--93603121
10
4.5
10
81
5
56
13
0
26
60
1.32
93607534--93607581
25
1.9
25
86
0
69
33
25
16
25
1.96
93607622--93607699
20
3.9
20
98
0
147
37
10
20
32
1.86
93607626--93607699
11
7.3
11
68
17
61
37
10
20
31
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335