genome.fa.s5.2.7.7.80.10.50.1000.318.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  318  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93607750--93607867	23	5.0	24	83	7	152	27	21	22	27	1.99
93607750--93607867	47	2.5	47	87	4	166	27	21	22	27	1.99
93608058--93608159	31	3.1	31	80	17	132	39	14	21	24	1.91
93608075--93608169	38	2.5	38	100	0	190	43	10	21	25	1.84
93615826--93615873	25	1.9	25	86	0	69	33	25	16	25	1.96
93615916--93615973	20	2.9	20	100	0	116	37	10	20	31	1.86
93616025--93616123	23	4.2	24	87	5	148	30	21	21	27	1.98
93616025--93616123	47	2.1	47	92	0	162	30	21	21	27	1.98
93616334--93616397	31	2.1	31	93	0	110	40	15	20	23	1.90
93618510--93618556	18	2.7	18	83	6	62	44	4	2	48	1.34
93626397--93626426	15	2.0	15	100	0	60	26	20	0	53	1.46
93627670--93627719	25	2.0	25	92	0	82	24	4	36	36	1.74
93632670--93632719	25	2.0	25	92	0	82	24	4	36	36	1.74
93634513--93634674	26	6.2	26	95	0	261	33	5	24	37	1.79
93636163--93636215	26	2.0	26	85	7	72	37	22	15	24	1.92
93641895--93642114	39	5.6	39	86	2	291	24	22	29	23	1.99
93641894--93642114	77	2.8	78	91	2	338	24	22	29	23	1.99
93649947--93650090	39	3.7	39	90	0	234	26	20	29	23	1.99
93649948--93650130	78	2.3	79	89	1	269	24	22	28	24	1.99
93651672--93651833	26	6.2	26	95	0	261	33	5	24	37	1.79
93661336--93661373	13	3.0	13	84	3	51	76	0	0	23	0.79
93661465--93661497	15	2.2	15	100	0	66	18	9	18	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93661530--93661586	10	5.6	10	80	2	60	61	1	3	33	1.23
93661530--93661590	21	3.0	20	79	13	61	60	1	3	34	1.23
93668021--93668260	126	1.9	126	93	0	417	38	15	16	29	1.90
93668343--93668393	13	4.0	13	80	14	52	64	0	5	29	1.17
93668696--93668734	14	2.7	14	92	4	60	64	2	0	33	1.08
93668686--93668742	19	3.1	18	85	12	71	63	1	0	35	1.05
93668738--93668842	30	3.5	29	67	20	72	60	6	5	27	1.45
93668717--93668847	59	2.2	60	82	10	153	63	5	4	26	1.36
93669167--93669226	29	2.1	29	87	6	86	18	1	46	33	1.59
93669463--93669844	85	4.5	85	86	3	540	21	26	23	29	1.99
93669819--93670020	87	2.3	87	92	0	332	26	16	19	37	1.93
93677767--93677811	21	2.1	21	88	8	65	17	24	20	37	1.93
93681240--93681471	125	1.9	125	93	1	403	38	15	16	28	1.90
93681563--93681613	13	4.0	13	80	14	52	64	0	5	29	1.17
93681921--93681951	14	2.2	14	94	0	53	67	0	0	32	0.91
93681923--93681959	19	2.0	18	94	5	65	67	0	0	32	0.91
93681932--93682072	63	2.2	64	80	14	168	62	5	4	26	1.38
93682348--93682383	18	2.0	18	94	0	63	16	0	58	25	1.38
93682366--93682428	29	2.2	29	85	5	83	19	0	47	33	1.49
93683026--93683104	36	2.1	38	88	9	117	36	10	16	36	1.82
93683026--93683104	19	4.2	19	88	9	117	36	10	16	36	1.82
93688879--93688934	10	5.6	10	78	19	55	82	0	7	10	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93689818--93690274	44	10.4	44	73	10	317	29	17	24	28	1.98
93689818--93690261	132	3.4	132	92	0	701	30	17	24	27	1.97
93690205--93690297	44	2.1	44	89	0	141	30	16	27	25	1.96
93690284--93690998	205	3.5	205	91	1	1173	30	19	21	28	1.97
93691092--93691183	45	2.0	45	85	4	123	32	16	26	25	1.96
93691529--93691616	36	2.5	36	87	10	112	38	10	14	36	1.80
93691539--93691636	19	5.2	19	88	7	146	37	10	16	35	1.82
93692021--93692072	19	3.2	15	78	21	52	36	7	3	51	1.49
93692365--93692391	8	3.4	8	100	0	54	11	0	22	66	1.22
93694629--93694685	27	2.1	27	100	0	114	35	3	12	49	1.58
93694639--93694693	27	2.2	25	81	12	60	41	3	12	41	1.60
93698769--93698823	28	2.0	28	92	0	92	23	20	23	32	1.98
93702162--93702213	16	3.2	17	84	10	56	26	0	7	65	1.20
93702186--93702272	3	28.3	3	70	21	56	29	3	2	64	1.22
93702129--93702316	13	12.1	15	68	25	74	30	2	3	62	1.26
93702129--93702323	28	6.9	29	67	23	96	31	2	3	62	1.26
93702191--93702256	19	3.4	19	81	8	80	30	4	1	63	1.23
93702342--93702415	18	3.9	19	80	15	73	28	5	1	64	1.23
93702658--93702715	17	3.6	17	71	21	61	36	1	0	62	1.06
93704679--93704751	33	2.2	33	92	2	121	34	19	4	42	1.70
93709289--93709315	14	1.9	14	100	0	54	25	0	0	74	0.83
93709530--93709614	39	2.3	37	91	6	136	38	10	11	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93712353--93712400	21	2.5	19	81	15	62	70	6	2	20	1.19
93712354--93712405	19	2.6	19	88	11	70	71	7	1	19	1.20
93713126--93713175	26	2.0	24	88	7	73	64	6	0	30	1.18
93713146--93713204	21	2.8	21	78	12	59	69	8	0	22	1.15
93717061--93717088	14	2.0	14	100	0	56	78	0	0	21	0.75
93718177--93718237	19	3.2	19	72	4	59	60	1	1	36	1.16
93719888--93719943	28	2.0	28	82	0	67	12	16	17	53	1.73
93730636--93730692	29	2.0	27	80	16	62	43	3	19	33	1.68
93751167--93751547	125	3.1	124	80	7	416	29	18	14	37	1.91
93752679--93752727	21	2.4	21	82	3	55	24	18	26	30	1.98
93752770--93752824	3	18.3	3	86	0	65	61	5	30	1	1.29
93752770--93752824	24	2.3	24	90	0	83	61	5	30	1	1.29
93753712--93753754	21	2.1	20	86	4	59	20	25	23	30	1.99
93753781--93753844	31	2.1	31	82	5	87	21	9	17	51	1.73
93754024--93754115	15	6.4	14	72	15	71	51	26	1	21	1.55
93754039--93754213	7	24.6	7	67	14	54	52	24	2	20	1.60
93754029--93754101	29	2.5	29	84	6	103	50	26	1	21	1.57
93754240--93754370	41	3.2	41	77	6	106	21	22	15	41	1.90
93754267--93754379	41	2.8	41	80	2	129	21	19	16	42	1.89
93770783--93771005	122	1.8	120	82	3	286	43	10	17	28	1.82
93771437--93771558	55	2.2	55	85	2	156	19	27	25	27	1.99
93773626--93773658	17	1.9	17	100	0	66	3	12	24	60	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93775231--93775308	38	2.1	38	97	0	147	25	21	14	38	1.91
93783593--93783771	27	6.5	27	77	5	171	36	16	21	25	1.94
93783593--93783760	55	3.1	55	86	4	223	37	16	21	24	1.93
93785110--93785145	18	2.1	17	89	5	54	66	0	0	33	0.92
93790985--93791020	18	2.0	18	94	0	63	38	8	27	25	1.84
93796616--93796657	7	5.9	7	86	13	59	88	0	0	11	0.53
93796616--93796650	8	4.4	8	86	13	54	88	0	0	11	0.51
93796616--93796657	15	2.9	14	92	3	66	88	0	0	11	0.53
93796616--93796650	16	2.2	16	95	5	63	88	0	0	11	0.51
93801359--93801424	14	4.7	14	83	7	62	37	7	16	37	1.77
93801359--93801424	28	2.4	28	82	5	80	37	7	16	37	1.77
93802338--93802438	28	3.6	28	89	0	148	35	9	23	30	1.88
93811792--93811837	19	2.4	19	100	0	92	41	13	36	8	1.75
93817323--93817356	17	1.9	18	94	5	61	20	23	17	38	1.93
93829344--93829458	19	6.2	19	90	10	184	38	10	15	35	1.82
93829344--93829457	36	3.2	34	91	8	167	38	10	15	35	1.82
93836519--93836559	21	2.0	21	95	0	73	19	26	21	31	1.97
93838063--93838170	53	2.0	53	100	0	216	20	20	19	39	1.92
93844014--93844051	2	19.0	2	100	0	76	50	0	0	50	1.00
93844781--93845025	81	3.0	81	90	4	359	32	22	24	20	1.98
93844774--93845024	122	2.0	123	89	7	386	33	21	23	20	1.97
93844781--93845025	41	6.0	41	87	5	327	32	22	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93845273--93845323	15	3.5	15	75	2	50	23	1	27	47	1.63
93848273--93848559	137	2.1	137	96	0	520	31	24	19	25	1.98
93848807--93848859	26	2.0	27	85	7	74	24	15	22	37	1.92
93850346--93850403	26	2.2	26	93	6	100	39	22	3	34	1.71
93853926--93854163	43	5.5	43	78	6	248	26	21	24	27	1.99
93853918--93854162	86	2.8	85	83	5	305	27	22	23	26	1.99
93857846--93857902	22	2.6	22	83	5	62	22	15	5	56	1.60
93857864--93857906	22	2.0	22	100	0	86	23	16	4	55	1.59
93859844--93859922	19	4.2	19	90	9	126	37	10	16	35	1.82
93859834--93859921	36	2.4	36	80	17	119	38	10	15	35	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335