genome.fa.s5.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  161  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47379583--47379714	29	4.5	29	97	1	246	37	14	24	24	1.92
47385932--47385967	18	1.9	19	88	5	56	63	0	25	11	1.27
47392876--47392984	39	2.8	38	87	6	146	25	22	28	22	1.99
47397588--47397746	27	5.9	27	79	11	157	33	21	24	20	1.97
47397603--47397746	54	2.7	54	90	2	218	34	22	24	19	1.97
47399368--47399475	26	4.2	26	93	0	189	36	24	7	32	1.83
47409494--47409540	25	1.9	25	86	4	69	21	0	2	76	0.89
47412127--47412334	40	5.2	39	82	6	233	25	27	21	24	1.99
47412127--47412334	80	2.6	80	83	6	260	25	27	21	24	1.99
47416623--47416734	41	2.7	43	81	12	133	29	24	19	26	1.98
47424191--47424222	2	16.0	2	100	0	64	50	0	0	50	1.00
47425985--47426186	40	5.1	39	85	5	235	24	22	27	25	2.00
47425985--47426186	80	2.5	80	83	3	262	24	22	27	25	2.00
47432897--47433106	40	5.2	40	88	2	305	21	28	24	25	1.99
47437423--47437628	40	5.2	39	81	8	222	24	21	27	26	1.99
47437423--47437628	39	5.2	40	82	5	233	24	21	27	26	1.99
47437423--47437628	79	2.6	78	82	6	229	24	21	27	26	1.99
47438167--47438209	21	2.0	21	100	0	86	18	13	23	44	1.86
47440046--47440194	80	1.9	80	81	2	183	22	30	24	22	1.99
47440087--47440194	40	2.7	38	85	8	128	21	29	25	23	1.99
47448740--47448946	53	3.8	53	79	3	225	37	18	24	19	1.94
47456178--47456384	53	3.8	53	75	5	200	37	18	24	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47460488--47460748	24	10.9	24	97	0	468	35	25	18	20	1.96
47468515--47468775	24	10.9	24	97	0	468	35	25	18	20	1.96
47480435--47480577	39	3.7	39	90	2	234	22	30	20	26	1.99
47480395--47480576	77	2.3	79	89	2	269	23	29	22	24	1.99
47488287--47488430	39	3.7	40	84	0	175	23	29	22	23	1.99
47490423--47490599	55	3.3	54	78	2	194	18	23	20	37	1.94
47495719--47495937	40	5.5	40	82	3	255	23	21	27	27	1.99
47503211--47503251	21	2.0	20	90	4	64	29	0	21	48	1.50
47506806--47506873	28	2.5	28	95	2	120	19	10	26	44	1.82
47508687--47508730	19	2.4	18	85	7	54	38	9	2	50	1.47
47511114--47511182	28	2.5	28	95	2	122	18	10	27	43	1.82
47512988--47513031	19	2.4	18	85	7	54	38	9	2	50	1.47
47515422--47515480	28	2.1	28	100	0	118	16	11	25	45	1.82
47517286--47517329	19	2.4	18	85	7	54	38	9	2	50	1.47
47517673--47517832	39	4.1	39	95	0	275	20	25	31	22	1.98
47519797--47519835	11	3.5	11	86	6	51	30	0	28	41	1.57
47523933--47524062	40	3.3	39	86	7	165	25	28	21	24	1.99
47529341--47529421	41	2.0	42	90	7	130	30	9	3	55	1.50
47531426--47531504	38	2.1	36	95	4	140	21	15	12	50	1.76
47534110--47534277	40	4.2	40	86	2	214	23	21	28	26	1.99
47538936--47539005	27	2.5	28	88	2	106	31	25	14	28	1.95
47541325--47541387	18	3.5	17	80	10	72	69	0	15	14	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47547312--47547381	27	2.6	27	95	2	122	30	27	14	28	1.95
47553017--47553045	12	2.5	12	94	5	51	41	20	0	37	1.53
47556399--47556551	70	2.2	70	97	0	288	20	18	29	30	1.97
47559495--47559744	66	3.9	64	76	10	188	24	29	16	29	1.97
47568013--47568099	34	2.6	34	77	0	93	29	21	22	25	1.99
47573794--47573835	23	1.9	23	85	9	61	28	16	11	42	1.84
47576500--47576650	40	3.8	40	79	6	155	26	23	27	22	2.00
47576537--47576666	40	3.2	40	80	2	154	23	23	27	24	2.00
47584498--47584653	40	3.9	40	77	8	156	26	23	27	23	2.00
47608724--47608762	20	2.1	19	90	9	62	51	15	28	5	1.64
47614134--47614212	31	2.5	31	95	0	140	26	24	20	29	1.99
47614418--47614605	26	7.3	26	83	2	231	28	23	20	27	1.99
47614418--47614605	52	3.7	52	88	3	267	28	23	20	27	1.99
47615408--47615494	27	3.2	26	88	3	111	19	24	20	35	1.96
47615548--47615599	27	1.9	27	84	7	70	34	15	11	38	1.83
47615635--47615841	27	7.8	26	75	8	184	28	9	21	40	1.85
47615636--47615815	80	2.2	80	90	2	272	29	9	21	40	1.84
47615639--47615841	53	3.8	54	80	6	191	29	9	20	40	1.84
47615802--47615873	26	2.7	27	84	2	83	31	6	20	40	1.79
47615833--47615963	27	4.9	27	86	0	154	40	9	20	29	1.85
47619148--47619300	39	3.9	39	87	0	207	24	30	20	24	1.99
47619117--47619299	78	2.3	79	88	1	260	23	29	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47621404--47621515	31	3.7	31	82	5	124	25	21	19	33	1.97
47621735--47621882	26	5.8	26	94	0	246	25	23	24	26	2.00
47622687--47622773	27	3.2	27	86	3	113	20	26	18	34	1.96
47622804--47623152	27	13.0	27	76	7	201	30	9	20	40	1.83
47622803--47623146	81	4.3	80	81	8	313	30	9	20	40	1.84
47622916--47623160	27	9.2	27	80	7	241	28	8	22	40	1.82
47623138--47623267	27	4.9	27	85	1	154	42	6	20	30	1.78
47623148--47623267	54	2.2	54	86	1	170	43	7	20	28	1.79
47625545--47625620	31	2.5	31	91	0	116	26	26	21	26	1.99
47625828--47625963	26	5.3	26	89	3	199	28	22	19	28	1.98
47626537--47626793	27	9.6	27	82	4	261	29	8	21	40	1.82
47626547--47626779	81	2.9	79	86	4	315	29	8	21	41	1.81
47626537--47626918	54	7.1	54	77	4	252	33	8	20	37	1.83
47626745--47626901	27	5.8	27	89	0	179	39	7	21	32	1.80
47626734--47626939	81	2.5	81	76	0	223	36	6	20	35	1.80
47633428--47633651	119	1.9	120	85	6	312	25	28	22	24	1.99
47633407--47633650	40	6.1	40	83	8	284	25	27	22	24	2.00
47653470--47653841	27	13.8	27	86	0	404	39	20	8	31	1.83
47653467--47653840	81	4.6	81	85	1	446	39	20	8	31	1.83
47653826--47653903	27	2.9	27	94	0	138	35	19	23	21	1.96
47653820--47653933	54	2.1	53	82	4	138	35	17	21	24	1.95
47654562--47654613	27	2.0	26	84	3	68	21	26	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47660653--47660698	24	1.9	24	82	8	58	23	2	17	56	1.52
47665551--47665774	41	5.5	41	78	3	209	34	12	29	23	1.92
47667296--47667429	41	3.2	41	81	9	146	29	27	16	26	1.97
47668764--47668822	26	2.3	26	100	0	118	27	40	18	13	1.88
47672761--47672928	40	4.2	40	79	1	158	22	27	23	26	2.00
47672777--47672926	80	1.9	80	84	5	205	21	27	24	26	1.99
47681986--47682010	12	2.1	12	100	0	50	32	0	0	68	0.90
47682579--47682636	27	2.1	28	87	9	84	46	3	41	8	1.51
47684265--47684414	40	3.8	39	80	3	140	23	28	22	26	1.99
47686860--47686967	39	2.9	38	73	23	95	28	25	20	25	1.99
47688653--47688837	79	2.3	81	83	7	227	23	27	24	24	2.00
47688646--47688837	40	4.8	39	76	8	163	23	28	23	24	2.00
47695566--47695723	29	5.5	29	81	7	171	26	17	30	25	1.97
47695562--47695694	57	2.4	57	83	6	164	27	15	30	26	1.96
47699956--47700140	79	2.3	81	83	7	227	23	27	24	24	2.00
47699949--47700140	40	4.8	39	76	8	163	23	28	23	24	2.00
47701937--47701970	17	1.9	17	88	5	50	20	44	23	11	1.84
47701936--47701977	18	2.3	18	76	8	50	26	42	21	9	1.83
47704801--47704950	40	3.8	40	79	6	142	21	26	22	30	1.99
47707363--47707444	41	2.0	41	100	0	164	43	12	7	36	1.70
47707828--47707853	2	13.0	2	100	0	52	50	0	0	50	1.00
47708012--47708193	7	25.7	7	70	14	61	45	33	1	19	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47708012--47708198	14	13.2	14	72	13	89	45	32	1	20	1.58
47708033--47708109	21	3.6	22	77	11	79	40	40	1	18	1.59
47708412--47708457	21	2.3	21	79	17	53	56	0	0	43	0.99
47711397--47711445	3	16.0	3	95	4	89	32	0	0	67	0.91
47711397--47711453	22	2.6	22	89	8	73	35	1	0	63	1.05
47716606--47716639	17	2.0	17	94	0	59	50	0	20	29	1.49
47716608--47716648	17	2.4	17	87	0	55	56	0	12	31	1.36
47724625--47724797	46	3.7	45	77	13	156	23	27	19	30	1.98
47724981--47725725	393	1.9	394	94	0	1314	35	8	20	34	1.84
47726650--47726825	46	3.8	46	79	12	207	20	21	29	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335