genome.fa.s5.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  171  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50849192--50849219	13	2.2	13	100	0	56	53	7	7	32	1.55
50853632--50853697	24	3.0	21	73	22	55	40	0	6	53	1.26
50860165--50860329	43	3.9	42	77	10	149	24	18	24	31	1.98
50876467--50876536	8	8.2	8	71	22	54	60	1	1	37	1.15
50876469--50876523	25	2.1	26	90	6	85	60	1	1	36	1.18
50876468--50876533	25	2.5	26	79	16	82	59	1	1	37	1.16
50876468--50876529	18	3.5	18	76	10	65	59	1	1	37	1.17
50883607--50883821	48	4.5	49	85	5	251	28	30	16	24	1.97
50883607--50883821	96	2.2	96	85	4	290	28	30	16	24	1.97
50902331--50902494	42	3.9	42	79	1	121	28	14	25	31	1.95
50902386--50902494	43	2.6	42	82	5	130	29	17	26	26	1.97
50904951--50905137	80	2.3	80	83	8	229	26	22	26	24	2.00
50904990--50905156	80	2.1	79	80	8	178	25	23	26	24	2.00
50904989--50905143	40	3.9	39	80	6	152	25	23	26	24	2.00
50909144--50909185	11	4.1	10	79	14	50	16	11	2	69	1.29
50911094--50911187	47	2.0	47	97	0	179	20	23	18	38	1.93
50911094--50911166	25	3.0	25	61	31	59	17	23	20	38	1.93
50912004--50912028	12	2.1	12	100	0	50	48	0	0	52	1.00
50915782--50915936	42	3.6	43	76	11	156	29	25	18	27	1.98
50915782--50915946	43	3.8	43	73	13	151	29	23	18	28	1.98
50935511--50935670	86	1.9	86	84	3	216	28	24	19	27	1.98
50935563--50935680	44	2.7	45	73	18	108	31	22	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50942172--50942198	2	13.5	2	100	0	54	51	0	0	48	1.00
50959263--50959428	46	3.6	46	76	16	173	22	19	28	28	1.98
50959250--50959420	93	1.8	93	91	2	281	22	21	28	27	1.99
50965373--50965662	113	2.5	114	77	5	289	34	11	14	40	1.81
50965456--50965731	113	2.4	112	74	10	252	39	10	11	38	1.77
50977817--50977947	35	3.7	35	80	3	129	37	29	12	20	1.89
50977815--50977967	35	4.4	35	78	1	110	39	30	11	18	1.85
50993009--50993185	40	4.4	40	84	4	225	23	22	27	26	2.00
50993009--50993185	80	2.2	80	89	5	261	23	22	27	26	2.00
50993413--50993454	22	1.9	22	85	9	59	33	9	14	42	1.78
51000999--51001175	40	4.4	40	85	4	234	23	22	27	25	2.00
51001403--51001444	22	1.9	22	85	9	59	33	9	14	42	1.78
51005395--51005433	7	5.6	7	100	0	78	28	0	0	71	0.86
51007104--51007414	47	6.6	45	75	12	245	29	19	27	22	1.98
51007107--51007323	94	2.3	94	86	3	294	29	19	27	23	1.98
51007110--51007377	94	2.9	93	82	7	285	29	19	27	22	1.98
51009558--51009736	40	4.4	40	78	3	171	25	23	26	24	2.00
51009558--51009750	80	2.4	80	80	2	199	26	23	26	23	2.00
51009679--51009762	40	2.1	40	82	4	98	26	27	26	20	1.99
51015854--51016228	178	2.1	178	93	1	642	37	16	5	41	1.70
51016390--51016466	36	2.2	36	95	2	138	35	6	28	29	1.82
51028341--51028441	28	3.5	30	82	6	118	29	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51028370--51028445	29	2.7	28	76	13	75	30	14	26	28	1.95
51036229--51036329	28	3.5	30	82	6	118	29	14	26	28	1.95
51036258--51036333	29	2.7	28	76	13	75	30	14	26	28	1.95
51039314--51039480	40	4.1	40	81	5	129	42	14	21	21	1.88
51039309--51039410	42	2.5	39	77	12	96	42	14	23	19	1.88
51039343--51039480	40	3.5	40	82	4	161	44	15	20	19	1.86
51039549--51039700	46	3.2	46	82	7	144	19	27	7	45	1.78
51042283--51042364	41	2.0	41	87	0	119	31	30	12	25	1.92
51042301--51042364	21	3.0	22	66	13	62	32	28	10	28	1.91
51043992--51044220	48	4.7	48	71	14	166	24	28	18	27	1.98
51043992--51044402	46	8.7	47	71	15	212	24	28	18	28	1.98
51053178--51053235	24	2.4	24	77	13	66	56	1	0	41	1.09
51055946--51056029	26	3.2	26	96	0	150	36	25	4	33	1.77
51057354--51057379	13	2.0	13	100	0	52	30	15	15	38	1.88
51066007--51066094	23	3.8	23	80	4	88	30	12	17	39	1.86
51066007--51066095	47	1.9	46	84	6	117	30	12	16	40	1.86
51073269--51073313	20	2.2	20	84	7	56	73	4	0	22	1.01
51073258--51073315	9	6.2	9	78	7	62	68	3	0	27	1.05
51073738--51073808	37	1.9	37	88	5	108	46	2	0	50	1.16
51080433--51080539	37	2.9	37	92	0	169	27	31	18	22	1.97
51080586--51081113	48	11.0	48	93	0	876	31	26	6	34	1.82
51081093--51081130	17	2.2	17	100	0	76	47	21	0	31	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51081045--51081178	65	2.1	65	98	0	259	36	26	5	31	1.79
51080997--51081226	113	2.0	113	90	1	363	33	26	6	33	1.81
51081110--51081228	48	2.5	48	92	0	193	35	24	5	35	1.77
51096263--51096370	38	2.8	39	83	8	123	24	28	24	23	1.99
51096263--51096411	40	3.8	40	77	8	119	23	26	23	26	2.00
51104218--51104384	40	4.2	40	81	2	167	23	26	22	26	2.00
51104234--51104384	80	1.9	79	83	6	198	23	27	23	26	2.00
51112578--51112631	20	2.8	19	75	13	58	18	27	38	14	1.90
51115669--51115713	23	2.0	23	90	0	72	42	26	17	13	1.86
51116291--51116336	21	2.2	21	84	7	58	43	17	0	39	1.49
51121356--51121477	48	2.6	46	85	5	156	28	16	28	26	1.97
51123129--51123311	39	4.6	39	86	0	231	23	30	21	24	1.99
51126078--51126145	30	2.3	30	97	0	127	42	10	2	44	1.53
51141651--51141817	46	3.6	48	80	6	175	31	18	26	23	1.97
51142163--51142210	11	4.4	11	97	0	87	58	22	18	0	1.39
51146181--51146505	161	2.0	162	92	0	544	34	22	17	26	1.96
51157258--51157428	94	1.8	92	89	2	270	30	17	27	23	1.97
51157255--51157518	46	5.8	45	76	9	248	28	18	28	25	1.98
51170873--51171056	40	4.6	39	75	6	138	26	23	27	22	2.00
51170913--51171101	80	2.4	81	77	4	186	23	24	29	22	1.99
51178990--51179173	40	4.6	39	75	6	138	26	23	27	22	2.00
51179030--51179218	80	2.4	81	77	4	186	23	24	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51181368--51181554	71	2.7	68	93	5	281	18	28	18	34	1.95
51181391--51181554	71	2.3	71	100	0	328	18	28	17	35	1.94
51181391--51181588	71	2.8	70	91	3	258	20	28	17	33	1.95
51188775--51188938	71	2.3	71	100	0	328	18	28	17	35	1.94
51188775--51188972	71	2.8	70	91	3	258	20	28	17	33	1.95
51195198--51195315	41	3.1	41	60	28	98	32	17	28	21	1.96
51195166--51195329	71	2.3	71	100	0	328	35	17	28	18	1.94
51202693--51202855	70	2.3	71	97	1	310	34	18	28	19	1.95
51205562--51205895	48	6.9	48	79	2	314	26	27	19	27	1.99
51205562--51205892	96	3.4	95	86	3	421	25	27	19	27	1.99
51211567--51211599	2	16.5	2	100	0	66	48	0	0	51	1.00
51214252--51214354	29	3.6	29	93	2	163	26	31	15	27	1.96
51218409--51218481	35	2.1	35	100	0	146	32	16	13	36	1.88
51235361--51235459	28	3.5	29	84	4	105	30	26	15	28	1.96
51237122--51237232	28	3.9	29	83	4	122	26	13	31	28	1.94
51240010--51240035	2	13.0	2	100	0	52	50	0	0	50	1.00
51240749--51240921	40	4.3	40	79	3	161	28	22	23	25	1.99
51240777--51240935	80	2.0	80	80	7	180	30	23	23	22	1.99
51240864--51240942	40	2.0	40	82	5	97	27	26	25	20	1.99
51243088--51243143	26	2.2	26	93	0	94	28	16	28	26	1.97
51244200--51244224	12	2.1	12	100	0	50	28	24	24	24	2.00
51245231--51245361	48	2.8	48	75	12	144	37	25	16	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51250369--51250540	93	1.8	93	96	0	317	27	29	21	20	1.98
51250362--51250537	46	3.8	46	79	12	216	28	29	21	20	1.98
51257947--51258118	93	1.8	93	96	0	317	27	29	21	20	1.98
51257940--51258115	46	3.8	46	79	12	216	28	29	21	20	1.98
51262417--51262490	29	2.5	28	84	4	85	31	33	14	20	1.93
51264379--51264506	40	3.3	39	83	6	170	24	28	25	21	1.99
51264379--51264543	40	4.2	40	79	13	155	24	27	24	23	2.00
51273531--51273660	40	3.3	39	84	4	172	23	24	28	23	2.00
51280914--51280967	25	2.2	25	100	0	108	29	7	18	44	1.77
51281612--51281741	40	3.3	39	83	4	163	23	25	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335