Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  134  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39657253--39657285
13
2.4
14
90
5
50
27
0
0
72
0.85
39657297--39657375
21
3.6
22
83
8
90
39
0
2
58
1.12
39657315--39657377
21
3.0
21
90
6
92
39
0
0
60
0.97
39657318--39657386
21
3.3
20
78
15
77
44
0
0
55
0.99
39657592--39657649
20
2.9
20
79
5
73
62
0
1
36
1.06
39657691--39657723
14
2.3
15
89
5
50
51
0
0
48
1.00
39657689--39657765
34
2.2
34
82
15
95
55
2
0
41
1.13
39657679--39657739
21
2.8
21
78
9
68
52
0
0
47
1.00
39657679--39657760
11
7.2
11
73
20
62
54
1
0
43
1.07
39657817--39657902
21
4.5
20
69
26
78
60
1
1
37
1.12
39657817--39657869
21
2.5
21
90
6
81
60
0
1
37
1.08
39657832--39657876
22
2.1
21
87
4
63
62
2
2
33
1.20
39657837--39657904
35
2.0
35
91
8
113
61
1
1
35
1.14
39657940--39657979
14
2.9
14
88
0
53
75
2
0
22
0.93
39659183--39659236
3
18.3
3
78
17
60
62
0
3
33
1.12
39659451--39659501
3
17.3
3
83
4
59
58
0
7
33
1.27
39659846--39659905
17
3.4
17
74
6
57
58
6
6
28
1.49
39659976--39660072
41
2.4
41
72
19
94
55
9
3
31
1.47
39660033--39660075
22
2.0
22
86
9
61
51
11
0
37
1.39
39660221--39660256
15
2.4
14
86
13
54
55
2
2
38
1.29
39660941--39660981
18
2.3
18
87
8
57
75
0
9
14
1.04
39660940--39660984
21
2.1
22
87
4
65
75
0
8
15
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39661930--39661964
14
2.5
14
85
0
52
40
0
20
40
1.52
39662024--39662107
40
2.1
40
100
0
168
29
17
4
47
1.68
39663896--39663940
24
2.0
24
87
12
69
11
6
11
71
1.31
39664335--39664368
16
2.1
17
88
5
52
44
0
11
44
1.40
39664756--39664780
2
12.5
2
100
0
50
52
0
0
48
1.00
39666359--39666389
14
2.2
14
94
0
53
61
6
6
25
1.45
39674325--39674356
17
1.9
17
93
6
57
62
0
0
37
0.95
39680512--39680546
18
1.9
18
88
0
52
25
5
2
65
1.28
39696784--39696813
14
2.1
14
100
0
60
66
0
26
6
1.16
39711523--39711701
39
4.6
39
92
0
295
13
26
22
37
1.91
39716037--39716172
26
5.2
26
98
0
245
33
4
25
37
1.76
39717652--39717703
25
2.0
26
85
3
70
38
23
13
25
1.91
39718810--39718835
2
13.0
2
100
0
52
50
0
0
50
1.00
39719555--39719580
12
2.2
12
100
0
52
23
0
7
69
1.14
39719569--39719622
19
2.8
20
81
10
69
40
0
5
53
1.24
39727834--39727863
15
2.0
15
100
0
60
20
0
66
13
1.24
39729714--39729758
22
2.1
21
84
8
56
31
0
2
66
1.04
39731143--39731216
24
3.3
23
69
21
66
52
1
4
41
1.28
39734247--39734571
3
106.0
3
75
11
189
28
5
4
61
1.38
39734781--39734878
34
2.8
35
71
13
87
27
7
4
61
1.41
39734793--39734878
34
2.4
36
76
7
95
27
6
3
61
1.38
39734781--39734823
3
14.0
3
80
4
50
30
2
2
65
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39734983--39735020
16
2.3
17
90
4
60
28
10
0
60
1.30
39738669--39738707
20
2.0
20
89
0
60
41
2
5
51
1.38
39742844--39742873
7
4.3
7
91
0
51
40
26
0
33
1.57
39743577--39743632
21
2.6
22
75
11
53
28
3
5
62
1.34
39745471--39745516
22
2.0
22
83
8
56
36
0
2
60
1.09
39745608--39745649
22
1.9
22
85
0
57
52
2
0
45
1.13
39749400--39749435
2
18.0
2
94
0
63
47
2
0
50
1.15
39749488--39749526
18
2.2
18
95
0
69
46
7
12
33
1.71
39750612--39750647
3
12.0
3
100
0
72
33
0
0
66
0.92
39750702--39750731
15
2.0
15
93
0
51
30
0
3
66
1.07
39752334--39752410
34
2.3
34
91
4
122
36
12
7
42
1.72
39755246--39755294
19
2.6
19
83
6
55
22
0
2
75
0.90
39755876--39755913
10
3.2
12
82
17
53
39
7
0
52
1.31
39757365--39757488
47
2.6
47
94
0
221
41
22
10
25
1.85
39757988--39758031
14
3.1
14
81
15
54
54
2
0
43
1.12
39759257--39759312
19
3.0
19
84
7
62
71
5
5
17
1.24
39764842--39764894
26
2.0
27
85
7
74
24
15
22
37
1.92
39766376--39766459
26
3.2
26
96
0
150
36
25
4
33
1.77
39767741--39768024
136
2.1
135
96
2
525
31
25
18
24
1.98
39768272--39768324
26
2.0
27
85
7
74
24
15
22
37
1.92
39769805--39769939
26
5.2
26
97
0
227
36
24
5
34
1.78
39773370--39773407
17
2.2
17
100
0
76
63
10
5
21
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39773843--39773878
2
18.0
2
100
0
72
50
0
0
50
1.00
39775331--39775407
40
1.9
40
89
0
118
35
32
16
15
1.91
39782908--39782966
30
2.0
30
86
0
82
23
38
18
18
1.93
39783924--39784002
40
2.0
40
92
0
131
36
31
15
16
1.90
39788111--39788236
47
2.7
47
86
0
171
31
26
15
25
1.96
39791590--39791708
33
3.7
33
70
20
108
36
8
23
31
1.85
39793629--39793697
33
2.1
33
83
0
84
26
18
34
20
1.96
39795605--39795638
12
2.8
12
86
0
50
85
0
11
2
0.71
39795605--39795663
16
3.4
17
76
21
50
79
1
11
6
0.99
39797085--39797117
3
11.0
3
100
0
66
33
0
0
66
0.92
39803317--39803377
31
2.0
31
100
0
122
36
13
19
31
1.90
39804807--39804922
43
2.7
43
78
7
119
36
19
17
26
1.94
39807666--39807731
31
2.1
31
85
0
87
24
21
30
24
1.99
39814534--39814559
13
2.0
13
100
0
52
30
0
15
53
1.42
39816547--39816572
5
5.2
5
100
0
52
42
57
0
0
0.98
39816614--39816640
14
1.9
14
100
0
54
74
3
0
22
0.98
39816588--39816645
6
9.2
6
75
17
55
74
3
0
22
0.97
39816665--39816715
18
2.8
18
74
11
50
29
7
17
45
1.77
39819275--39819403
61
2.1
61
85
2
170
25
31
21
20
1.98
39820237--39820262
13
2.0
13
100
0
52
30
0
15
53
1.42
39824069--39824164
40
2.5
39
77
3
104
16
11
34
37
1.85
39826019--39826076
20
3.0
19
90
5
64
31
18
15
34
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39826034--39826076
20
2.2
20
100
0
86
30
18
16
34
1.93
39826772--39826814
18
2.6
17
82
10
54
48
0
0
51
1.00
39831089--39831123
18
1.9
18
88
0
52
25
0
0
74
0.82
39834344--39834407
27
2.3
28
79
15
71
68
3
3
25
1.18
39835367--39835417
21
2.4
22
80
9
61
68
3
0
27
1.07
39838223--39838250
4
7.0
4
100
0
56
25
0
0
75
0.81
39838733--39838772
2
20.0
2
100
0
80
50
0
0
50
1.00
39839781--39839810
2
15.0
2
100
0
60
50
0
0
50
1.00
39846670--39846714
22
2.0
22
91
0
72
22
28
22
26
1.99
39847102--39847145
22
1.9
24
90
9
74
0
13
15
70
1.17
39851883--39851946
20
3.2
20
70
18
53
43
4
1
50
1.32
39851318--39852064
400
1.8
399
85
7
1036
40
13
11
35
1.80
39854771--39854815
14
3.2
14
90
0
72
73
11
2
13
1.19
39856404--39856549
71
2.1
71
93
0
247
29
15
23
30
1.96
39857106--39857153
22
2.2
22
100
0
96
47
6
20
25
1.73
39860173--39860198
9
2.9
9
100
0
52
23
0
0
76
0.78
39860697--39860740
22
2.0
22
86
0
61
56
9
4
29
1.50
39862073--39862138
33
2.0
34
82
8
82
74
12
6
7
1.22
39862426--39862479
12
4.2
13
78
15
51
70
3
0
25
1.04
39862591--39862647
29
2.0
29
82
6
71
22
10
7
59
1.54
39862890--39862919
11
2.7
11
89
0
51
40
0
0
60
0.97
39864755--39864798
19
2.4
19
85
7
56
50
0
9
40
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39866393--39866460
28
2.5
28
90
4
104
44
22
10
23
1.83
39868833--39868876
19
2.4
19
85
7
56
50
0
9
40
1.34
39870472--39870540
28
2.5
28
92
2
113
43
26
10
20
1.83
39874113--39874181
16
4.3
15
80
10
75
18
28
1
50
1.56
39874971--39875010
21
2.0
20
85
5
53
55
17
12
15
1.70
39875812--39875852
17
2.6
16
79
20
50
14
34
34
17
1.90
39877271--39877410
27
5.2
28
90
5
184
35
22
24
17
1.96
39879003--39879112
26
4.2
26
95
2
177
36
24
4
34
1.76
39881106--39881146
18
2.3
18
84
12
50
41
2
0
56
1.13
39881106--39881146
17
2.3
18
84
12
50
41
2
0
56
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335