genome.fa.s5.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  179  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53743006--53743052	20	2.3	20	85	3	58	51	14	17	17	1.77
53745891--53745980	29	3.1	29	93	1	146	31	31	12	25	1.92
53748290--53748414	46	2.7	46	89	0	187	21	20	28	30	1.98
53750665--53750694	15	2.0	15	93	0	51	20	0	23	56	1.42
53751245--53751356	45	2.5	45	82	1	136	25	13	25	36	1.92
53752380--53752433	27	2.0	27	96	0	99	33	5	18	42	1.73
53754568--53754718	43	3.5	43	82	6	198	31	23	16	27	1.96
53756504--53756562	29	2.0	29	96	0	109	28	13	15	42	1.85
53760296--53760327	8	4.0	8	91	0	55	46	25	25	3	1.67
53760574--53760638	28	2.3	28	92	5	105	35	27	7	29	1.85
53760764--53760830	27	2.4	28	87	5	91	19	26	19	34	1.96
53760764--53760843	27	2.9	28	83	5	74	20	27	18	33	1.96
53761820--53762024	103	2.0	102	99	0	401	34	19	17	28	1.95
53762016--53762049	10	3.3	10	84	8	50	29	8	8	52	1.62
53768563--53768655	28	3.3	28	92	0	150	34	27	6	31	1.82
53768772--53768850	27	2.8	27	88	5	113	20	26	21	31	1.98
53774907--53775125	40	5.4	40	82	4	217	24	25	22	26	2.00
53774907--53775126	80	2.7	80	83	0	260	25	25	22	26	2.00
53779883--53779968	43	2.0	43	100	0	172	41	16	6	34	1.75
53781571--53781712	40	3.5	40	83	1	124	27	23	26	22	1.99
53781610--53781738	40	3.2	39	84	6	152	24	22	27	25	2.00
53789602--53789743	40	3.5	40	83	1	124	27	23	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53789641--53789769	40	3.2	39	84	6	152	24	22	27	25	2.00
53794801--53794898	38	2.6	38	88	0	133	21	16	27	34	1.95
53794919--53794970	22	2.4	21	90	6	77	23	13	25	38	1.91
53798779--53798829	21	2.4	21	86	0	66	17	23	27	31	1.97
53799384--53799471	39	2.2	40	86	6	126	23	23	27	25	2.00
53807299--53807441	40	3.6	40	81	4	121	28	23	27	20	1.99
53807337--53807449	40	2.8	39	84	6	138	25	23	28	23	1.99
53810630--53810689	31	1.9	31	89	0	93	26	20	15	38	1.91
53810871--53811048	25	7.2	25	89	5	231	27	23	19	29	1.98
53811099--53811165	20	3.3	20	89	0	107	32	19	11	35	1.88
53811099--53811154	11	5.5	11	71	16	57	32	17	12	37	1.88
53818768--53818830	31	2.0	31	93	0	108	23	23	15	36	1.94
53819015--53819192	25	7.2	25	87	5	213	28	22	19	29	1.98
53819243--53819309	20	3.3	20	93	0	116	32	20	11	34	1.90
53819243--53819298	11	5.5	11	71	16	57	32	19	12	35	1.89
53839609--53839673	29	2.4	27	82	7	69	58	1	9	30	1.39
53839922--53839952	2	15.5	2	93	0	53	48	0	3	48	1.17
53840097--53840141	3	15.0	3	100	0	90	66	0	0	33	0.92
53841836--53842339	133	3.8	133	88	1	742	28	24	17	28	1.97
53841762--53842339	265	2.2	257	89	3	854	29	23	17	28	1.97
53841921--53842264	45	7.8	44	65	11	121	28	26	16	27	1.97
53842108--53842547	221	2.0	220	93	0	745	27	24	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53842231--53842431	88	2.3	88	82	4	280	29	22	18	29	1.97
53842407--53842605	45	4.5	45	67	14	115	24	28	18	29	1.98
53842328--53842619	133	2.2	133	92	0	485	28	26	18	27	1.98
53848054--53848115	30	2.1	30	96	0	115	40	30	17	11	1.85
53848766--53848798	2	16.5	2	93	0	57	48	0	3	48	1.17
53849126--53849190	29	2.4	27	82	7	69	58	1	9	30	1.39
53849420--53849454	2	17.5	2	87	0	52	45	0	5	48	1.26
53849597--53849641	3	15.0	3	100	0	90	66	0	0	33	0.92
53850395--53850459	29	2.4	27	82	7	69	58	1	9	30	1.39
53850857--53850898	3	14.0	3	100	0	84	66	0	0	33	0.92
53851749--53851800	17	3.1	17	77	5	52	75	1	15	7	1.12
53858098--53858238	42	3.3	41	81	7	149	31	26	13	28	1.94
53875189--53875393	53	3.8	53	76	3	203	36	17	24	20	1.94
53885388--53885594	53	3.8	53	77	5	209	38	16	24	20	1.92
53887202--53887364	81	2.0	81	96	0	299	33	15	19	31	1.93
53887228--53887351	38	3.1	38	64	15	97	34	12	17	34	1.88
53892838--53892884	23	2.0	23	100	0	94	25	44	8	21	1.80
53896178--53896321	40	3.6	40	88	0	198	24	27	22	26	2.00
53898290--53898329	19	2.2	18	86	8	55	40	17	12	30	1.86
53900009--53900176	43	3.9	43	88	1	230	26	19	27	25	1.99
53900009--53900176	85	2.0	86	85	3	232	26	19	27	25	1.99
53900559--53900631	21	3.5	21	79	3	76	2	42	20	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53905377--53905520	49	2.9	50	81	5	175	28	27	18	25	1.98
53907634--53907698	15	4.4	15	78	16	73	63	13	13	9	1.53
53907634--53907702	30	2.3	31	83	14	92	60	17	13	8	1.56
53910693--53910886	51	3.9	50	75	6	162	27	27	18	26	1.98
53915524--53915630	39	2.7	39	86	2	151	26	20	28	24	1.99
53915530--53915656	40	3.2	40	88	3	177	23	22	29	23	1.99
53915529--53915694	79	2.1	79	78	6	176	23	21	28	25	1.99
53923532--53923638	39	2.7	39	88	2	160	26	19	28	25	1.99
53923538--53923664	40	3.2	40	88	5	179	23	22	29	24	1.99
53923538--53923694	79	2.0	79	80	7	176	23	21	28	26	1.99
53925629--53925890	9	29.0	9	71	13	155	36	1	15	46	1.54
53925660--53925951	64	4.6	64	95	0	485	36	1	15	46	1.56
53925666--53925946	9	32.8	9	68	17	138	37	1	14	46	1.55
53925660--53926003	128	2.7	128	84	5	315	38	2	14	44	1.59
53926045--53927243	99	11.7	99	75	12	1046	53	3	5	36	1.44
53926256--53927256	208	4.8	208	95	0	1779	54	3	5	36	1.43
53926703--53926779	37	2.1	37	82	7	93	50	2	6	40	1.42
53925966--53927256	417	3.1	416	94	2	2230	53	4	6	35	1.45
53925966--53927268	625	2.1	617	92	3	1742	53	4	6	35	1.46
53929605--53929652	21	2.3	21	92	0	78	41	33	0	25	1.55
53929623--53930045	182	2.3	182	99	0	828	44	29	2	22	1.66
53929810--53929869	28	2.1	28	87	3	84	50	35	1	13	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53930028--53930108	22	3.7	22	80	8	103	37	40	1	20	1.61
53930106--53930153	15	3.4	15	82	8	57	47	31	2	18	1.60
53932088--53932219	47	2.8	47	80	1	147	33	27	15	24	1.95
53943085--53943191	53	2.0	53	85	3	144	21	25	19	33	1.97
53944992--53945039	20	2.3	21	92	3	80	35	10	18	35	1.85
53945087--53945181	25	3.8	25	92	2	156	25	25	23	26	2.00
53945087--53945217	25	5.2	24	85	8	147	29	22	22	25	1.99
53945428--53945492	31	2.1	32	88	5	98	29	15	24	30	1.96
53956499--53956565	25	2.7	25	88	0	107	29	23	23	22	1.99
53956815--53956879	31	2.1	32	85	5	89	29	12	26	32	1.92
53957549--53957712	54	3.0	54	85	0	202	26	22	13	37	1.91
53957685--53957806	47	2.6	47	93	0	208	26	22	13	37	1.91
53964409--53964464	27	2.0	27	82	3	67	17	3	21	57	1.55
53965908--53965967	27	2.3	27	85	2	77	21	23	20	35	1.96
53966336--53966373	18	2.1	18	95	0	67	21	2	5	71	1.19
53966341--53966393	27	2.0	27	82	14	65	22	3	3	69	1.20
53973960--53974284	161	2.0	161	93	2	555	36	4	16	41	1.70
53974287--53974434	20	7.4	20	68	3	100	16	28	18	36	1.93
53974292--53974456	40	4.1	40	87	1	215	16	29	16	36	1.92
53974300--53974499	80	2.5	80	80	6	192	17	28	17	37	1.93
53974479--53974534	20	2.8	20	68	10	51	14	26	19	39	1.90
53975971--53976010	20	1.9	22	85	10	57	17	5	20	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53976103--53976193	43	2.1	43	93	0	155	24	27	27	20	1.99
53976112--53976207	43	2.2	43	90	1	147	20	28	26	25	1.99
53985207--53985250	22	2.0	22	86	0	61	52	4	0	43	1.22
53987235--53987399	43	3.9	42	70	13	131	30	23	15	30	1.95
53990183--53990208	2	13.0	2	100	0	52	50	0	0	50	1.00
53990923--53991095	40	4.3	40	81	2	177	27	22	24	25	2.00
53990921--53991095	80	2.2	81	83	3	219	26	22	25	25	2.00
53990951--53991135	80	2.3	80	78	6	187	28	23	24	23	1.99
53991038--53991121	40	2.1	40	82	4	98	26	27	26	20	1.99
53994040--53994203	71	2.3	71	97	0	310	34	18	28	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335