genome.fa.s5.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  175  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52452213--52452371	27	5.9	26	81	7	167	34	21	24	19	1.96
52452231--52452371	54	2.6	54	89	2	212	34	22	24	18	1.96
52452475--52452550	26	2.8	27	84	4	91	30	14	21	34	1.93
52452788--52452817	16	1.9	15	93	6	51	3	20	23	53	1.60
52453971--52454078	26	4.2	26	93	0	189	36	24	7	32	1.83
52455599--52455661	25	2.5	25	78	0	72	28	17	23	30	1.97
52455609--52455715	54	2.0	54	83	0	133	32	20	18	28	1.96
52456835--52456873	20	2.0	20	85	10	53	15	5	28	51	1.64
52458792--52458831	20	2.0	20	100	0	80	40	20	0	40	1.52
52459384--52459510	44	2.9	43	81	7	141	32	27	16	23	1.96
52459351--52459510	42	3.7	42	76	10	137	31	26	16	25	1.97
52467035--52467215	40	4.6	40	89	2	260	27	24	27	20	1.99
52479480--52479562	42	2.0	42	95	0	148	31	10	27	30	1.91
52482330--52482415	43	2.0	43	84	8	113	22	18	30	29	1.97
52485843--52485901	30	2.0	30	93	0	100	33	13	27	25	1.93
52487882--52488004	39	3.2	39	77	4	140	33	12	29	25	1.92
52498183--52498215	14	2.3	15	94	5	59	18	9	15	57	1.63
52501563--52501592	15	2.1	15	93	6	53	30	6	26	36	1.82
52501777--52501837	31	2.0	31	83	6	79	54	0	6	39	1.27
52504353--52504495	38	3.7	38	82	6	155	31	24	20	23	1.98
52504353--52504495	76	1.9	78	82	5	184	31	24	20	23	1.98
52506933--52507110	43	4.2	43	79	4	207	27	19	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52506949--52507110	85	1.9	85	91	2	263	27	19	29	24	1.98
52510634--52510734	28	3.5	30	82	6	118	29	14	26	28	1.95
52510663--52510738	29	2.7	28	76	13	75	30	14	26	28	1.95
52523746--52523797	23	2.3	24	84	15	67	21	9	3	65	1.38
52527863--52528028	40	4.2	40	88	4	230	26	28	22	22	1.99
52534393--52534438	23	2.0	22	95	4	83	30	23	8	36	1.85
52535949--52536086	39	3.5	39	91	5	199	28	26	20	23	1.99
52540806--52540879	29	2.6	29	95	0	139	27	31	14	27	1.95
52540747--52540879	58	2.3	58	80	2	133	24	33	17	24	1.96
52544974--52545131	68	2.3	68	95	0	280	24	30	14	31	1.95
52547120--52547261	27	5.3	27	70	13	96	30	9	22	37	1.85
52550565--52550697	69	1.9	70	92	1	223	32	13	17	36	1.89
52552017--52552311	47	6.3	47	92	0	464	35	8	28	27	1.86
52554697--52555082	40	9.7	40	90	0	517	25	22	28	24	1.99
52557138--52557270	69	1.9	70	92	1	223	32	13	17	36	1.89
52558592--52558886	47	6.3	47	92	0	464	35	8	28	27	1.86
52562229--52562285	30	1.9	30	89	7	89	40	5	24	29	1.77
52563099--52563335	50	4.7	50	81	3	296	24	16	26	32	1.96
52565202--52565253	20	2.6	20	90	0	86	21	32	32	13	1.92
52569649--52569901	68	3.8	64	75	12	210	24	29	16	29	1.96
52572858--52573028	93	1.8	93	92	2	290	29	28	20	22	1.98
52572853--52573025	46	3.8	45	77	13	183	30	27	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52575398--52575447	15	3.4	15	86	2	66	60	12	18	10	1.59
52575409--52575456	15	3.2	15	79	5	53	56	14	16	12	1.68
52578367--52578536	92	1.8	93	94	1	306	28	28	21	21	1.99
52578362--52578533	46	3.7	46	77	14	201	29	27	20	22	1.99
52581492--52581667	46	3.8	46	79	12	216	20	21	29	28	1.98
52581489--52581660	93	1.8	93	96	0	317	20	21	29	27	1.98
52589049--52589224	46	3.8	46	79	12	216	20	21	29	28	1.98
52589046--52589217	93	1.8	93	96	0	317	20	21	29	27	1.98
52591245--52591283	15	2.6	15	95	0	69	53	10	23	12	1.69
52593985--52594023	18	2.2	18	100	0	78	28	23	0	48	1.51
52593978--52594019	18	2.4	17	92	4	66	28	21	0	50	1.49
52594252--52594421	93	1.8	93	93	0	295	30	27	20	22	1.98
52594247--52594424	46	3.8	46	75	7	198	29	26	19	23	1.98
52596295--52596464	40	4.2	40	91	1	261	26	20	26	27	1.99
52596295--52596487	40	4.8	40	85	4	248	27	19	25	26	1.99
52604404--52604621	40	5.4	40	90	4	307	25	20	27	27	1.99
52615802--52615836	9	3.8	9	85	7	52	71	2	17	8	1.23
52626205--52626388	40	4.6	40	82	4	174	28	22	26	23	1.99
52628947--52629022	26	2.9	27	78	5	93	40	22	17	19	1.91
52632840--52632912	26	2.8	26	83	6	94	38	27	19	15	1.91
52632846--52632922	26	3.0	26	82	0	91	37	25	22	14	1.92
52635417--52635449	16	2.1	16	94	0	57	36	12	15	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52640482--52640676	86	2.3	86	91	2	313	32	22	16	28	1.96
52640495--52640638	42	3.4	43	81	8	195	34	23	17	25	1.96
52640482--52640671	42	4.4	43	75	11	176	32	23	16	27	1.96
52647412--52647589	40	4.4	40	88	5	227	25	21	26	26	1.99
52647457--52647612	80	2.0	79	84	6	208	26	21	26	26	1.99
52655523--52655747	40	5.6	40	84	2	281	25	24	27	23	2.00
52657135--52657201	27	2.5	27	92	0	107	34	20	20	23	1.97
52680432--52680523	35	2.6	36	87	1	132	18	10	27	43	1.83
52683502--52683562	30	2.0	30	83	0	77	31	22	8	37	1.84
52688649--52688751	29	3.6	28	81	5	116	21	16	33	29	1.95
52696663--52696765	29	3.6	28	81	5	116	21	16	33	29	1.95
52711236--52711512	81	3.4	81	86	1	376	31	23	6	39	1.79
52711222--52711513	27	10.8	27	85	1	334	32	22	6	38	1.80
52711547--52711782	27	8.7	27	79	5	190	40	18	8	33	1.81
52711801--52711874	27	2.7	27	76	12	71	37	20	20	21	1.94
52712688--52712757	25	2.8	24	89	4	95	25	27	22	24	2.00
52712977--52713091	31	3.7	31	95	1	205	30	17	25	26	1.97
52718278--52718346	28	2.5	28	93	4	115	30	26	14	28	1.95
52725995--52726063	28	2.5	28	93	4	115	30	26	14	28	1.95
52728169--52728261	28	3.3	28	83	3	107	26	11	33	27	1.92
52740548--52740585	19	2.1	19	90	5	60	26	15	39	18	1.91
52740665--52740771	29	3.8	28	77	6	108	28	14	32	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52740657--52740769	58	2.0	57	85	1	154	30	14	30	24	1.94
52743954--52744052	28	3.5	29	80	6	105	30	26	15	28	1.96
52747318--52747416	28	3.5	29	80	6	105	30	26	15	28	1.96
52754997--52755095	28	3.5	29	80	6	105	30	26	15	28	1.96
52771531--52771561	15	2.1	15	93	0	53	32	6	25	35	1.82
52773759--52773861	29	3.6	29	81	2	118	21	16	33	29	1.95
52777924--52777993	27	2.5	28	95	2	124	28	14	27	30	1.95
52777924--52778005	27	3.0	27	85	8	78	29	15	24	30	1.96
52785476--52785545	27	2.5	28	95	2	124	28	14	27	30	1.95
52785476--52785557	27	3.0	27	85	8	78	29	15	24	30	1.96
52787391--52787554	63	2.6	63	76	7	163	26	27	18	27	1.98
52792361--52792452	30	3.1	30	87	0	139	16	34	33	15	1.90
52792361--52792475	60	1.9	59	80	7	133	17	33	33	15	1.91
52799360--52799491	29	4.6	29	84	1	149	25	16	32	25	1.96
52806250--52806381	29	4.6	29	84	1	149	25	16	32	25	1.96
52811110--52811144	2	18.0	2	91	5	54	45	0	2	51	1.16
52813657--52813825	40	4.2	40	80	4	173	23	26	21	28	1.99
52816393--52816559	40	4.2	40	78	6	160	25	22	27	24	2.00
52824395--52824561	40	4.2	40	78	6	160	25	22	27	24	2.00
52833423--52833637	40	5.4	40	92	2	337	24	23	27	24	2.00
52840617--52840655	21	1.9	21	89	5	62	28	20	28	23	1.99
52846991--52847346	49	7.3	49	92	1	567	31	8	30	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52847020--52847102	27	3.3	27	60	16	68	31	4	30	33	1.79
52852205--52852275	26	2.5	28	82	13	92	39	11	5	43	1.64
52852222--52852273	26	2.0	26	96	0	95	36	11	5	46	1.64
52852406--52852482	20	3.8	20	74	16	70	67	3	3	24	1.25
52852537--52852564	11	2.5	11	100	0	56	39	0	0	60	0.97
52852731--52852795	26	2.5	25	71	11	60	58	4	6	30	1.43
52853654--52853750	26	3.6	29	69	18	75	31	1	3	63	1.16
52853650--52853782	54	2.5	53	84	8	175	33	0	3	63	1.15
52855303--52855345	18	2.4	18	92	0	68	20	27	9	41	1.83
52858859--52859127	126	2.1	126	88	0	403	31	14	16	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335