genome.fa.s5.2.7.7.80.10.50.1000.230.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  230  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69373227--69373271	19	2.4	18	86	13	65	66	0	33	0	0.92
69373876--69373905	2	15.0	2	100	0	60	50	0	0	50	1.00
69374140--69374187	19	2.5	20	74	16	55	58	0	8	33	1.28
69374567--69374632	18	3.6	18	81	2	78	31	6	13	48	1.67
69374649--69374712	18	3.6	18	76	0	65	42	10	7	39	1.69
69384761--69384870	41	2.7	41	91	1	175	34	25	13	26	1.93
69384810--69384926	41	2.9	41	81	2	128	30	28	15	25	1.96
69386364--69386397	18	1.9	18	88	5	52	20	41	26	11	1.87
69395137--69395179	20	2.2	20	87	4	61	41	18	11	27	1.85
69404583--69404607	11	2.3	11	100	0	50	36	0	0	64	0.94
69405110--69405149	21	2.0	20	90	5	62	35	0	22	42	1.54
69405115--69405157	21	2.1	21	83	12	54	32	2	20	44	1.65
69408958--69408990	11	3.0	11	95	0	57	48	0	0	51	1.00
69424378--69424537	27	5.9	27	80	11	177	35	21	23	18	1.96
69424378--69424537	54	3.0	54	88	4	236	35	21	23	18	1.96
69425913--69425960	24	2.0	24	100	0	96	54	20	12	12	1.70
69426153--69426259	26	4.2	25	92	4	178	36	22	7	33	1.82
69426153--69426259	51	2.1	52	94	1	189	36	22	7	33	1.82
69427905--69427944	20	2.0	21	85	14	57	27	32	17	22	1.96
69431160--69431318	27	5.9	27	82	11	184	35	22	23	18	1.96
69431178--69431318	54	2.6	54	93	2	239	35	24	23	17	1.95
69439677--69439741	23	2.6	25	79	18	73	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69439677--69439735	25	2.2	27	85	8	77	32	0	0	67	0.91
69439793--69439856	27	2.4	27	100	0	128	15	35	35	12	1.85
69444003--69444068	12	5.6	12	75	10	73	1	40	34	22	1.63
69445672--69445707	11	3.3	11	92	0	54	52	5	0	41	1.24
69446764--69446832	3	22.7	3	85	8	86	0	36	0	63	0.94
69446962--69447025	27	2.4	27	100	0	128	12	35	35	15	1.85
69447083--69447140	25	2.2	27	84	9	75	67	0	0	32	0.91
69447535--69447585	23	2.2	23	83	13	61	39	0	0	60	0.97
69448294--69448391	49	2.0	50	93	2	171	28	6	10	55	1.57
69448301--69448398	50	2.0	48	84	5	126	29	7	10	53	1.61
69454407--69454567	29	5.6	29	85	2	171	24	32	15	27	1.95
69462227--69462387	29	5.6	29	85	2	171	24	32	15	27	1.95
69464186--69464334	42	3.5	42	85	0	190	15	33	25	25	1.95
69468501--69468602	47	2.2	46	84	5	125	30	23	13	32	1.93
69468499--69468602	46	2.3	47	81	8	126	30	24	13	31	1.93
69469030--69469054	10	2.5	10	100	0	50	0	0	8	92	0.40
69473425--69473575	40	3.8	40	80	7	173	24	27	23	24	2.00
69473429--69473615	80	2.3	80	82	9	229	24	26	22	26	2.00
69477516--69477594	39	2.0	39	97	0	149	32	3	22	40	1.72
69478374--69478544	43	4.0	43	85	1	227	26	21	29	22	1.99
69478391--69478623	43	5.6	41	77	6	150	27	20	29	23	1.99
69482413--69482460	3	16.0	3	100	0	96	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69489780--69489863	41	2.0	41	100	0	168	39	20	7	33	1.80
69495389--69495421	12	2.8	12	100	0	66	84	0	15	0	0.61
69497080--69497160	34	2.4	32	78	13	83	67	3	4	23	1.26
69497134--69497193	5	12.2	5	76	16	54	75	1	3	20	1.04
69505248--69505350	29	3.6	29	78	2	100	20	17	33	28	1.95
69513195--69513295	29	3.6	28	78	7	98	20	16	33	28	1.95
69513225--69513302	27	2.8	27	80	7	77	21	15	33	29	1.94
69521157--69521259	29	3.6	29	78	2	100	20	17	33	28	1.95
69523755--69523826	31	2.3	31	87	0	108	29	25	29	16	1.97
69543622--69543701	40	2.0	40	92	0	133	23	15	26	35	1.94
69544972--69545033	30	2.1	30	100	0	124	41	14	12	30	1.83
69545837--69545862	13	2.0	13	100	0	52	46	7	7	38	1.61
69547774--69547975	100	2.0	100	92	0	332	34	27	9	28	1.89
69548629--69548654	6	4.3	6	100	0	52	84	0	0	15	0.62
69553242--69553312	22	3.2	21	75	9	70	35	14	5	45	1.68
69555225--69555294	27	2.6	27	97	2	131	31	27	12	28	1.93
69563090--69563160	27	2.6	28	97	2	135	30	26	12	29	1.93
69567748--69567782	18	2.0	18	88	5	54	34	11	14	40	1.82
69575180--69575205	2	13.0	2	100	0	52	50	0	0	50	1.00
69575243--69575276	2	17.0	2	100	0	68	50	50	0	0	1.00
69575415--69575449	16	2.1	17	89	5	54	34	11	8	45	1.71
69578137--69578161	10	2.5	10	100	0	50	12	12	20	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69580101--69580125	12	2.1	12	100	0	50	72	0	0	28	0.86
69585490--69585559	27	2.5	28	95	2	124	28	14	27	30	1.95
69593400--69593469	27	2.5	28	95	2	124	28	14	27	30	1.95
69593400--69593481	27	3.0	27	85	8	78	29	15	24	30	1.96
69601456--69601512	29	1.9	30	89	3	89	33	3	12	50	1.57
69601458--69601521	29	2.2	29	83	8	76	34	4	10	50	1.59
69601697--69601765	29	2.3	31	82	5	88	39	14	10	36	1.80
69601464--69602067	310	2.0	309	85	1	834	39	10	9	40	1.72
69606635--69606842	40	5.2	40	81	2	193	25	23	25	25	2.00
69606637--69606842	80	2.6	80	82	3	227	25	23	25	24	2.00
69612206--69612838	315	2.0	315	96	0	1167	28	29	16	25	1.97
69623014--69623182	47	3.6	47	91	0	266	37	14	23	25	1.92
69623209--69623357	55	2.8	53	79	6	174	36	16	24	21	1.94
69623226--69623357	53	2.4	55	82	5	171	35	17	25	21	1.95
69631124--69631292	40	4.2	40	80	4	173	23	26	21	28	1.99
69638632--69638762	40	3.3	40	85	0	172	24	27	21	26	1.99
69638649--69638799	40	3.8	40	85	4	180	23	25	22	28	1.99
69641880--69642061	39	4.6	40	82	4	172	23	25	22	28	1.99
69649363--69649545	40	4.6	40	83	3	181	23	26	22	27	1.99
69655577--69655633	20	2.8	20	94	0	96	36	12	19	31	1.89
69655682--69655740	24	2.4	24	86	8	75	32	22	20	25	1.98
69658115--69658282	40	4.2	40	81	4	178	23	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69666726--69666782	20	2.8	20	94	0	96	36	12	19	31	1.89
69666832--69666940	26	4.3	26	90	6	156	29	20	22	28	1.98
69667545--69667579	18	1.9	18	88	0	52	34	25	8	31	1.86
69671169--69671206	19	2.0	19	94	0	67	26	28	7	36	1.84
69673281--69673431	40	3.8	40	79	6	155	25	22	27	23	2.00
69681287--69681453	40	4.2	40	78	6	160	25	22	27	24	2.00
69683322--69683423	42	2.4	44	83	9	131	31	22	18	27	1.97
69695289--69695388	10	9.2	11	69	14	64	42	22	1	35	1.60
69695285--69695393	54	2.0	54	98	0	209	43	22	0	33	1.60
69706586--69706677	42	2.2	42	90	0	139	34	21	15	28	1.94
69706818--69706942	50	2.5	51	92	3	200	28	21	22	27	1.99
69706821--69706942	26	4.8	26	91	3	187	27	22	22	27	1.99
69707744--69707827	27	3.1	27	84	3	107	22	25	20	32	1.98
69707866--69708118	27	9.3	27	78	6	179	31	8	20	39	1.83
69707866--69708103	81	2.9	79	75	12	212	31	8	19	40	1.82
69707866--69708104	54	4.4	54	76	6	239	30	8	19	40	1.82
69708096--69708226	27	4.9	27	87	0	181	39	9	22	27	1.86
69708069--69708226	54	2.9	54	82	0	181	37	9	22	29	1.86
69711310--69711340	16	1.9	16	100	0	62	51	29	6	12	1.65
69712825--69712968	29	5.0	29	84	5	168	27	13	31	28	1.94
69717110--69717140	16	1.9	16	93	0	53	48	25	19	6	1.72
69717364--69717475	29	3.9	29	81	5	138	25	15	33	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69717356--69717464	58	1.9	57	88	5	166	27	14	33	24	1.95
69720360--69720542	27	6.8	27	88	1	242	31	23	6	38	1.80
69720315--69720688	27	13.9	27	80	4	175	36	21	6	35	1.79
69720360--69720570	54	3.9	55	81	4	243	32	23	6	37	1.79
69720363--69720571	107	2.0	107	84	1	276	33	22	6	37	1.80
69720530--69720742	27	7.8	27	76	12	148	42	19	6	31	1.75
69720535--69720744	110	1.9	108	81	5	253	42	19	6	31	1.75
69720791--69720864	27	2.7	27	76	12	80	39	21	18	20	1.93
69721574--69721660	20	4.3	20	92	2	140	40	10	18	31	1.84
69721710--69721831	25	4.8	26	89	3	178	27	24	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335