genome.fa.s5.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  162  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47726647--47726818	93	1.8	93	94	0	308	20	22	29	27	1.98
47736976--47737056	39	2.1	39	100	0	162	37	13	24	24	1.92
47745924--47746108	79	2.3	81	85	7	245	24	22	27	26	2.00
47745925--47746108	40	4.6	39	84	9	221	24	22	27	26	2.00
47745925--47746141	79	2.7	78	80	12	237	25	21	26	25	2.00
47754100--47754284	79	2.3	81	85	7	245	24	22	27	26	2.00
47754101--47754284	40	4.6	39	84	9	221	24	22	27	26	2.00
47754101--47754317	79	2.7	78	80	12	237	25	21	26	25	2.00
47757121--47757190	27	2.6	27	86	2	104	32	30	11	25	1.91
47762780--47762894	46	2.5	45	83	6	135	25	28	18	27	1.98
47764670--47764703	17	2.0	17	88	0	50	47	0	20	32	1.51
47765561--47765643	43	1.9	43	85	4	114	25	12	26	36	1.91
47772488--47772608	55	2.2	55	83	2	145	18	24	28	28	1.98
47775951--47776014	31	2.1	31	90	0	101	21	23	17	37	1.94
47776206--47776372	24	7.0	24	92	3	257	26	22	22	28	1.99
47776205--47776372	71	2.3	71	90	4	257	26	22	22	29	1.99
47776429--47776501	9	7.4	9	71	17	56	35	20	9	34	1.85
47776421--47776501	20	4.1	20	95	0	144	34	19	9	35	1.85
47776421--47776496	11	7.5	11	71	16	65	32	19	10	36	1.86
47786854--47786940	37	2.3	36	94	5	147	26	33	19	20	1.97
47787009--47787369	49	7.4	49	95	0	569	30	29	8	31	1.87
47791206--47791427	118	1.9	118	91	2	365	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47791206--47791427	40	5.6	40	94	2	369	26	28	21	23	1.99
47791396--47791544	40	3.7	40	79	5	149	27	28	20	23	1.99
47791223--47791541	118	2.7	118	83	6	333	27	28	20	23	1.99
47791210--47791544	158	2.1	159	80	6	376	26	28	20	23	1.99
47793405--47793490	36	2.3	36	92	7	138	26	33	18	20	1.96
47793559--47793918	49	7.4	49	95	0	569	30	29	8	31	1.87
47793539--47793905	195	1.9	197	89	1	576	29	30	8	31	1.88
47802417--47802546	40	3.2	40	83	4	165	22	23	29	24	1.99
47807824--47808005	78	2.3	78	89	2	267	24	22	29	23	1.99
47807823--47807966	39	3.7	39	90	0	234	26	21	29	22	1.99
47809766--47809819	27	2.0	27	96	0	99	25	5	18	50	1.69
47823174--47823212	20	2.0	20	100	0	78	25	35	28	10	1.89
47827539--47827706	47	3.6	46	75	5	149	25	31	17	25	1.97
47827533--47827706	94	1.9	94	86	0	249	25	31	17	25	1.97
47834121--47834178	28	2.0	29	87	9	84	15	41	22	20	1.90
47837793--47837859	34	1.9	36	85	8	95	43	11	25	19	1.85
47842201--47842299	28	3.5	28	81	9	112	29	25	16	29	1.96
47849864--47849962	28	3.5	28	81	9	112	29	25	16	29	1.96
47852158--47852246	27	3.2	27	82	6	108	33	22	23	20	1.97
47852133--47852246	55	2.1	55	80	9	126	35	21	23	19	1.95
47855193--47855481	47	6.1	47	77	10	191	24	29	18	27	1.98
47855286--47855483	46	4.3	46	78	14	201	24	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47855193--47855381	96	2.0	95	80	7	213	23	29	19	27	1.98
47860885--47861051	40	4.2	40	79	6	169	26	22	26	24	2.00
47862901--47862933	12	2.8	12	90	0	57	18	9	6	66	1.40
47866774--47866812	18	2.1	19	85	4	53	7	23	2	66	1.30
47866803--47866870	29	2.4	29	82	2	75	13	25	0	61	1.32
47866833--47866880	18	2.6	18	80	3	51	12	18	2	66	1.33
47866847--47866871	12	2.1	12	100	0	50	8	16	0	76	1.02
47866873--47866904	12	2.7	12	100	0	64	25	15	12	46	1.81
47867924--47867965	11	3.8	11	90	0	66	21	4	4	69	1.26
47867924--47867966	22	2.0	22	95	0	77	23	4	4	67	1.28
47870323--47870387	6	10.7	6	75	15	62	49	18	16	15	1.80
47870340--47870432	31	3.0	31	76	7	98	48	16	16	19	1.81
47870346--47870449	32	3.3	32	81	4	104	51	14	14	19	1.75
47870584--47870660	27	2.9	26	86	3	82	36	19	22	22	1.95
47870611--47870683	27	2.7	27	85	6	87	35	20	23	20	1.96
47870841--47870905	22	3.0	22	80	8	78	33	23	23	20	1.97
47871393--47871485	20	4.6	18	75	20	78	29	17	21	32	1.96
47871358--47871466	44	2.5	43	83	8	132	28	17	17	36	1.93
47871426--47871485	19	3.1	19	88	4	93	28	20	20	31	1.97
47871464--47872000	27	19.9	27	90	1	826	26	18	18	36	1.94
47874844--47874882	19	2.1	19	85	4	53	7	20	2	69	1.26
47874876--47874942	30	2.2	30	83	0	80	11	23	0	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47874900--47874951	18	2.9	18	82	0	59	13	19	1	65	1.36
47874918--47874942	12	2.1	12	100	0	50	8	16	0	76	1.02
47875011--47875067	5	11.0	5	75	20	55	1	17	3	77	1.00
47875011--47875067	16	3.7	14	82	15	60	1	17	3	77	1.00
47875011--47875072	21	3.0	21	75	15	58	1	16	4	77	1.02
47877328--47877546	40	5.5	40	93	2	372	23	22	27	26	2.00
47877328--47877546	79	2.8	79	92	3	361	23	22	27	26	2.00
47877328--47877546	119	1.8	119	92	3	370	23	22	27	26	2.00
47879268--47879312	12	3.8	12	90	0	72	20	4	4	71	1.21
47884438--47884486	18	2.6	19	78	12	57	32	2	6	59	1.34
47885890--47885927	20	1.9	20	88	0	58	21	10	31	36	1.87
47895994--47896207	46	4.6	46	78	6	189	30	17	28	23	1.97
47895994--47896207	94	2.3	94	80	1	232	30	17	28	23	1.97
47902126--47902292	45	3.7	45	86	0	226	29	20	27	22	1.98
47902126--47902293	91	1.9	90	88	1	255	30	20	27	22	1.98
47906391--47906472	41	2.0	41	83	2	103	31	15	29	23	1.95
47910018--47910208	40	4.8	39	74	10	156	24	24	28	22	1.99
47913650--47913690	20	2.0	21	86	13	59	31	2	12	53	1.51
47919151--47919189	20	1.9	21	89	5	62	28	25	12	33	1.93
47921125--47921168	19	2.4	19	85	7	56	50	0	9	40	1.34
47921781--47922856	539	2.0	539	96	0	1972	27	15	25	31	1.96
47924140--47924186	23	2.0	23	95	0	85	21	14	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47927631--47927655	13	1.9	13	100	0	50	24	4	32	40	1.73
47928719--47928782	31	2.1	31	93	0	110	21	21	17	39	1.93
47928957--47929072	24	4.9	24	88	8	118	26	24	22	26	2.00
47928981--47929072	24	4.0	23	91	8	143	27	25	22	25	2.00
47928981--47929072	46	2.0	46	93	4	159	27	25	22	25	2.00
47929124--47929183	20	3.0	20	90	0	102	31	20	11	36	1.88
47929226--47929273	25	1.9	25	86	0	69	25	16	25	33	1.96
47936999--47937062	31	2.1	31	93	0	110	21	21	17	39	1.93
47937253--47937353	24	3.9	24	74	22	80	27	24	21	25	1.99
47937291--47937348	30	1.9	30	96	0	107	31	24	22	22	1.99
47937405--47937464	20	3.0	20	90	0	102	31	20	11	36	1.88
47937507--47937554	25	1.9	25	86	0	69	25	16	25	33	1.96
47939420--47939586	40	4.2	40	79	6	169	25	21	27	25	1.99
47945727--47945794	27	2.5	28	92	2	111	26	14	27	30	1.95
47945727--47945807	27	3.0	27	83	8	67	27	16	25	30	1.96
47952175--47952245	34	2.1	34	89	5	108	38	15	22	23	1.93
47954624--47954663	20	2.0	20	100	0	80	25	15	20	40	1.90
47957141--47957209	30	2.3	30	82	0	93	18	17	33	30	1.94
47966276--47966464	49	3.8	49	80	8	204	29	29	17	23	1.97
47966281--47966468	100	1.9	99	85	5	263	29	29	17	23	1.97
47968899--47968962	14	4.4	14	74	14	58	64	12	14	9	1.50
47971969--47972112	49	2.9	48	86	6	207	28	29	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47971981--47972116	50	2.7	51	90	3	215	28	30	16	24	1.97
47976180--47976204	2	12.5	2	100	0	50	52	0	0	48	1.00
47979522--47979644	43	2.9	43	80	4	151	30	23	14	30	1.94
47984309--47984409	28	3.5	30	82	6	118	29	14	26	28	1.95
47984338--47984413	29	2.7	28	76	13	75	30	14	26	28	1.95
47992172--47992272	28	3.5	30	82	6	118	29	14	26	28	1.95
47992201--47992276	29	2.7	28	76	13	75	30	14	26	28	1.95
47996551--47996819	28	9.5	28	67	20	159	29	27	14	28	1.96
47996514--47996819	56	5.4	56	92	2	495	29	28	14	27	1.95
47996514--47996819	114	2.7	114	95	1	544	29	28	14	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335