genome.fa.s5.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  125  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37703767--37703824	29	2.0	29	89	0	89	55	6	8	29	1.56
37706532--37706570	19	2.0	19	85	5	51	38	5	12	43	1.65
37706618--37706688	11	7.2	10	73	19	60	73	1	1	23	1.00
37706625--37706688	8	7.8	8	74	19	60	73	1	1	23	1.01
37706639--37706688	19	2.8	18	84	6	66	74	0	2	24	0.93
37711333--37711395	3	20.7	3	77	9	56	65	0	33	1	1.03
37712449--37712476	11	2.5	11	100	0	56	35	0	7	57	1.26
37714087--37714147	12	5.1	12	78	7	70	24	34	39	1	1.65
37718321--37718362	16	2.5	17	88	3	59	61	0	0	38	0.96
37719007--37719032	6	4.3	6	100	0	52	46	15	19	19	1.85
37719410--37719498	3	29.7	3	100	0	178	66	0	0	33	0.92
37720102--37720139	17	2.1	19	90	9	62	0	23	0	76	0.79
37722546--37722689	43	3.4	42	79	14	161	32	25	18	24	1.97
37722546--37722689	42	3.4	42	80	9	157	32	25	18	24	1.97
37725602--37725651	26	1.9	26	100	0	100	48	6	6	40	1.52
37728462--37728495	3	11.3	3	87	12	52	29	2	0	67	1.05
37728712--37728736	13	1.9	13	100	0	50	24	0	4	72	1.02
37728758--37728788	3	10.0	3	93	6	53	35	0	0	64	0.94
37735358--37735640	44	6.6	43	73	5	214	27	19	25	27	1.98
37735406--37735661	85	3.0	84	86	4	343	27	20	24	27	1.99
37735720--37735945	44	5.1	44	63	14	115	26	21	21	30	1.98
37735693--37736373	88	7.8	88	86	1	875	28	21	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37735755--37736328	44	13.0	44	64	10	213	28	22	20	29	1.98
37735693--37736373	264	2.6	263	87	0	975	28	21	19	29	1.98
37736866--37736958	44	2.1	44	82	9	111	27	22	22	26	1.99
37738697--37738736	3	13.3	3	100	0	80	32	0	0	67	0.91
37738952--37738976	13	1.9	13	100	0	50	24	0	4	72	1.02
37738998--37739052	3	18.0	3	96	3	101	34	0	0	65	0.93
37748542--37748585	23	1.9	23	85	0	61	29	2	2	65	1.16
37748985--37749047	12	5.4	11	75	17	56	26	1	1	69	1.06
37748996--37749053	18	3.4	18	75	20	54	25	3	3	67	1.22
37748985--37749046	14	4.1	14	78	17	70	27	1	1	69	1.07
37749064--37749106	13	3.2	13	84	12	52	27	4	2	65	1.25
37755949--37755998	25	2.0	25	96	0	91	28	10	20	42	1.84
37764666--37765023	90	4.1	90	77	9	328	30	5	25	38	1.79
37769630--37769721	30	3.1	30	93	3	150	26	2	11	59	1.44
37775070--37775177	26	4.2	26	92	0	180	33	7	23	36	1.83
37789346--37789421	38	2.0	38	94	0	134	40	9	14	35	1.78
37789439--37789496	2	29.0	2	92	0	98	50	3	0	46	1.18
37791910--37792106	41	4.7	42	83	1	236	19	22	14	43	1.87
37791911--37792123	21	10.3	21	78	3	164	18	23	15	42	1.88
37792223--37792283	24	2.5	24	97	0	113	36	8	9	45	1.67
37793632--37793677	13	3.5	13	82	14	58	63	2	6	28	1.31
37793666--37793714	19	2.7	18	84	9	55	53	4	14	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37793906--37794022	3	38.3	3	80	6	110	64	0	5	29	1.20
37799215--37799253	19	2.1	19	100	0	78	28	10	25	35	1.89
37807815--37807852	3	12.7	3	100	0	76	34	0	0	65	0.93
37809423--37809473	18	2.9	17	82	8	50	35	27	7	29	1.85
37809640--37809680	18	2.3	19	83	12	59	21	36	19	21	1.95
37812431--37812557	41	3.0	41	83	3	155	33	19	19	27	1.96
37812339--37812734	179	2.2	180	83	4	476	32	17	19	30	1.95
37812431--37812781	44	7.9	44	73	8	253	31	18	20	29	1.96
37813269--37813298	12	2.5	12	94	0	51	60	20	16	3	1.50
37816332--37816400	25	2.6	28	73	21	76	31	2	4	60	1.31
37816402--37816455	24	2.2	24	83	0	63	35	3	1	59	1.26
37816411--37816470	24	2.5	24	88	0	93	35	0	1	63	1.05
37816417--37816905	26	18.8	26	68	13	204	29	6	3	59	1.40
37816418--37816647	57	4.4	54	73	18	148	29	4	3	62	1.34
37816411--37816663	50	4.9	48	72	18	136	30	4	3	61	1.32
37816610--37816657	14	3.5	14	75	16	55	35	2	0	62	1.07
37816706--37816751	23	2.0	23	86	0	65	30	2	2	65	1.16
37816757--37816875	55	2.3	51	80	9	118	27	7	3	61	1.39
37816730--37816874	80	1.9	76	83	11	186	26	6	4	62	1.37
37825729--37825801	36	2.0	36	97	0	137	39	13	15	31	1.86
37826020--37826076	30	1.9	30	85	7	80	21	3	1	73	1.07
37826022--37826086	5	13.0	5	75	12	62	20	3	1	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37830539--37830565	4	6.8	4	100	0	54	77	0	0	22	0.76
37831158--37831216	5	11.0	5	85	7	64	20	0	1	77	0.85
37831156--37831213	23	2.5	24	84	13	70	20	0	1	77	0.86
37836739--37836793	3	18.3	3	100	0	110	34	0	0	65	0.93
37838681--37838720	19	2.1	19	86	9	55	57	7	0	35	1.27
37844786--37844823	18	2.0	18	90	10	58	34	0	0	65	0.93
37845384--37845438	24	2.3	24	100	0	110	38	40	0	21	1.54
37848167--37848209	22	1.9	23	85	4	61	46	13	2	37	1.57
37848193--37848245	19	3.0	17	76	10	61	35	15	9	39	1.79
37851251--37851295	22	2.0	22	100	0	90	37	17	13	31	1.89
37853212--37853256	23	2.0	23	91	4	74	46	17	4	31	1.68
37853238--37853290	19	3.0	17	81	10	70	37	16	7	37	1.78
37853209--37853266	22	2.6	22	86	7	82	43	18	3	34	1.68
37853222--37853279	19	2.8	20	84	10	64	39	17	6	36	1.76
37862629--37862677	10	5.0	9	83	11	53	22	6	2	69	1.21
37863591--37863626	9	3.8	10	92	7	58	27	0	0	72	0.85
37866576--37866864	3	97.7	3	78	6	270	29	6	0	63	1.24
37866954--37867006	11	4.5	12	79	11	65	20	7	0	71	1.10
37867020--37867062	3	14.0	3	95	4	77	34	0	0	65	0.93
37870099--37870181	41	2.0	41	100	0	166	33	19	28	18	1.95
37871468--37871513	14	3.5	13	80	16	51	41	8	2	47	1.46
37884576--37884639	33	2.0	33	87	3	94	21	31	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37887785--37887827	18	2.4	17	82	17	52	72	0	4	23	1.04
37887988--37888183	99	2.0	99	87	4	288	51	12	11	23	1.73
37895411--37895442	3	11.0	3	93	6	57	65	0	0	34	0.93
37895408--37895445	11	3.6	11	86	13	62	65	0	0	34	0.93
37895471--37895508	20	1.9	20	84	10	51	63	0	10	26	1.27
37895506--37895583	29	2.6	30	78	13	81	50	1	11	37	1.47
37895566--37895726	16	10.0	16	67	15	66	62	1	9	25	1.36
37895566--37895751	3	61.7	3	65	20	50	61	3	9	25	1.41
37896232--37896283	25	2.1	25	85	3	70	13	21	9	55	1.66
37896384--37896432	24	2.0	24	96	0	89	20	4	48	26	1.67
37896426--37896456	12	2.6	12	100	0	62	9	0	41	48	1.36
37896878--37897105	44	5.2	44	69	9	140	25	23	22	28	1.99
37896745--37897082	133	2.5	133	85	0	426	28	21	20	29	1.98
37896832--37897194	177	2.1	177	87	3	516	26	22	20	30	1.98
37896915--37897196	89	3.2	88	68	10	241	25	22	20	31	1.98
37896878--37897234	177	2.0	177	87	1	403	25	22	22	29	1.99
37897274--37897740	44	10.7	44	63	11	143	25	24	21	28	1.99
37897120--37897970	263	3.2	261	87	2	1202	25	24	20	29	1.99
37897125--37897968	394	2.1	395	90	0	1303	25	24	20	29	1.99
37897053--37897972	131	7.0	132	87	1	1188	25	24	20	29	1.99
37898538--37898597	25	2.4	25	88	5	86	30	18	11	40	1.86
37899605--37899642	7	5.7	7	84	12	53	10	10	0	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37899600--37899642	12	3.4	13	81	15	54	9	9	0	81	0.88
37903546--37903715	50	3.5	50	80	11	192	34	15	22	27	1.94
37903691--37903808	31	3.8	31	93	0	191	26	20	27	25	1.99
37903824--37904036	95	2.3	90	81	7	225	28	14	27	30	1.95
37903824--37904036	47	4.6	47	83	9	199	28	14	27	30	1.95
37903920--37904083	42	3.7	43	83	9	181	28	14	28	28	1.95
37905701--37905738	12	3.2	12	84	0	58	7	18	18	55	1.66
37908169--37908464	3	99.7	3	66	20	99	62	2	7	27	1.36
37908266--37908464	11	17.7	11	65	20	58	63	3	6	26	1.34
37908248--37908292	23	2.0	23	81	0	54	62	2	11	24	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335