Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  28  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10285479--10285606
57
2.2
57
84
0
166
31
0
21
46
1.57
10285915--10287996
373
5.6
373
99
0
4056
39
10
13
36
1.81
10290344--10290383
20
2.0
20
95
0
71
45
17
20
17
1.86
10292239--10292270
15
2.1
15
94
0
55
31
9
0
59
1.29
10292206--10292251
23
1.9
24
86
8
67
45
0
0
54
0.99
10292691--10292741
18
2.8
18
85
8
68
49
1
3
45
1.32
10293080--10293212
40
3.3
40
82
6
126
18
21
23
36
1.95
10300206--10300253
13
3.7
14
81
13
59
72
0
27
0
0.84
10300233--10300287
24
2.4
24
75
6
60
70
3
25
0
1.03
10301534--10302555
135
7.6
135
85
3
1327
30
21
21
27
1.98
10301534--10302555
268
3.8
267
87
3
1405
30
21
21
27
1.98
10302066--10302279
45
4.8
45
69
15
165
29
23
22
23
1.99
10301555--10302553
403
2.5
403
88
0
1527
30
20
21
26
1.98
10302768--10302827
29
2.1
29
87
6
86
33
46
1
18
1.59
10302791--10302864
37
2.0
38
94
2
132
28
48
1
21
1.58
10302850--10302885
18
2.0
18
100
0
72
22
61
0
16
1.35
10302944--10302993
12
4.2
12
82
12
59
26
0
36
38
1.57
10302944--10302987
23
1.9
23
86
9
63
25
0
36
38
1.56
10303243--10303281
20
1.9
21
84
5
53
25
2
0
71
0.98
10303214--10303331
61
1.9
63
83
13
156
29
4
4
61
1.34
10303548--10303589
21
2.0
21
85
0
57
23
11
7
57
1.59
10303803--10304046
126
1.9
126
95
0
443
29
17
15
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10304785--10304946
43
3.8
42
78
12
161
30
24
19
25
1.98
10305355--10305393
17
2.2
18
90
4
62
56
20
2
20
1.54
10305355--10305393
9
4.4
9
80
6
53
56
20
2
20
1.54
10316324--10316376
22
2.4
22
80
3
61
43
7
0
49
1.31
10316833--10316863
12
2.6
12
89
0
53
6
41
38
12
1.69
10317871--10317900
4
7.8
4
92
7
53
26
23
0
50
1.50
10318798--10318823
12
2.2
12
100
0
52
0
0
7
92
0.39
10321099--10321140
21
2.0
21
100
0
84
28
9
23
38
1.86
10321120--10321265
55
2.6
57
94
2
260
28
11
19
40
1.87
10326392--10326451
29
2.1
29
96
0
111
23
8
11
56
1.61
10347291--10347332
16
2.5
17
88
7
68
9
4
7
78
1.08
10356800--10356849
18
3.0
16
83
13
57
34
2
0
64
1.05
10357403--10357465
32
2.0
32
81
6
74
41
7
6
44
1.59
10359325--10359357
12
2.5
13
85
14
50
60
3
0
36
1.12
10359860--10359899
19
2.0
21
90
9
66
27
0
5
67
1.11
10363813--10363845
17
2.0
17
94
5
59
36
15
0
48
1.45
10364141--10364431
92
3.2
92
92
0
465
19
22
14
43
1.87
10364141--10364445
46
6.6
46
86
2
416
20
22
13
43
1.87
10365687--10365801
44
2.6
44
85
2
149
35
13
22
27
1.92
10365687--10365820
46
3.0
45
82
4
153
35
14
23
26
1.93
10373026--10373148
44
2.7
45
83
5
149
33
14
22
29
1.94
10377593--10377742
67
2.2
67
81
8
171
32
17
28
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10377617--10377800
67
2.8
64
77
8
194
29
17
29
22
1.97
10378884--10378908
2
12.5
2
100
0
50
48
0
0
52
1.00
10388060--10388086
6
4.5
6
100
0
54
70
0
0
29
0.88
10402871--10403021
53
2.8
53
89
4
214
25
16
27
29
1.97
10410387--10410537
53
2.8
53
89
4
214
25
16
27
29
1.97
10415414--10415449
18
2.0
18
94
0
63
58
5
13
22
1.56
10415798--10415822
11
2.3
11
100
0
50
84
0
16
0
0.63
10423762--10423792
15
2.1
15
100
0
62
48
19
12
19
1.81
10427421--10427454
16
2.1
16
94
0
59
52
8
11
26
1.67
10430949--10430980
16
1.9
16
93
6
55
78
3
0
18
0.89
10431212--10431242
14
2.2
14
94
0
53
83
3
12
0
0.75
10434316--10434394
19
3.9
19
71
12
68
56
1
1
40
1.15
10437694--10437926
79
2.9
79
90
0
349
26
19
12
41
1.87
10438896--10439075
92
2.0
91
94
3
317
32
16
13
37
1.88
10459110--10459157
24
2.0
25
83
4
62
52
0
6
41
1.27
10459105--10459160
25
2.2
25
78
6
60
55
0
5
39
1.23
10462442--10462509
30
2.3
29
80
14
79
52
5
11
29
1.61
10466908--10466967
27
2.2
27
96
0
111
35
15
23
26
1.94
10468665--10468711
25
2.0
25
83
8
62
27
14
4
53
1.60
10471991--10472256
46
6.0
46
86
7
352
21
24
15
38
1.92
10472170--10472245
38
2.0
38
100
0
152
23
26
18
31
1.97
10477356--10477506
53
2.8
53
88
4
205
26
16
27
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10487955--10488001
24
2.0
23
84
8
60
40
2
0
57
1.11
10489800--10489825
7
3.7
7
100
0
52
84
0
0
15
0.62
10492036--10492077
12
3.5
12
87
12
59
85
2
11
0
0.68
10496621--10496683
32
2.0
32
87
6
92
25
6
23
44
1.77
10496593--10496788
96
2.0
97
95
1
349
25
11
19
43
1.84
10496717--10496777
32
1.9
32
83
12
81
24
6
24
44
1.77
10497989--10498082
46
2.1
46
95
2
172
39
8
6
45
1.60
10507722--10507766
2
22.0
2
95
4
81
48
0
2
48
1.13
10508005--10508039
2
18.0
2
94
5
63
51
0
0
48
1.00
10509236--10509295
16
3.8
16
69
18
54
20
0
28
51
1.47
10509385--10509435
16
2.8
19
77
22
65
35
0
21
43
1.53
10509968--10510212
126
1.9
126
90
0
391
34
17
18
28
1.94
10510157--10510271
60
1.9
60
92
0
194
31
20
16
31
1.95
10510031--10510400
186
2.0
186
94
0
650
34
19
16
28
1.94
10510217--10510534
126
2.5
126
89
2
469
35
18
17
28
1.93
10512115--10512264
46
3.3
46
87
1
205
19
22
14
44
1.86
10512928--10512963
5
7.0
5
93
6
63
38
0
0
61
0.96
10512998--10513058
30
2.0
30
81
9
70
59
6
34
0
1.24
10514316--10514450
39
3.4
39
76
8
123
23
20
27
28
1.99
10517149--10517187
16
2.4
16
91
0
60
0
30
0
69
0.89
10517214--10517251
17
2.2
18
90
9
62
5
15
0
78
0.91
10519689--10519717
4
7.5
4
92
7
51
75
0
24
0
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10522696--10522738
18
2.4
18
92
0
68
41
9
27
20
1.83
10523327--10523359
7
4.7
7
96
0
57
57
18
0
24
1.40
10524368--10524504
49
2.8
47
83
8
161
53
5
8
32
1.56
10524606--10524638
17
2.1
16
88
11
50
75
6
0
18
1.00
10527048--10527101
28
2.0
28
85
7
76
40
16
11
31
1.84
10538442--10539048
84
7.3
84
85
5
667
16
32
10
41
1.82
10538416--10539048
252
2.5
249
84
5
771
17
32
10
40
1.83
10539538--10539572
17
2.1
17
94
0
61
51
17
22
8
1.72
10540874--10540911
19
2.1
18
85
14
51
55
2
0
42
1.14
10548619--10548706
23
3.8
23
89
0
131
18
2
25
54
1.55
10548628--10548660
16
2.1
16
88
11
50
18
6
24
51
1.68
10548607--10548726
46
2.7
46
81
8
149
16
1
27
54
1.52
10548674--10548707
16
2.1
16
88
0
50
20
0
17
61
1.34
10548870--10548910
14
2.8
16
78
17
52
17
0
31
51
1.46
10548871--10548910
21
1.9
21
85
10
55
17
0
32
50
1.47
10548870--10548931
29
2.1
29
82
5
72
17
1
29
51
1.55
10548943--10549017
22
3.3
23
72
9
64
16
0
25
58
1.38
10549100--10549162
29
2.1
30
85
5
83
17
4
22
55
1.60
10549146--10549192
14
3.4
14
76
8
51
21
2
14
61
1.43
10549154--10549197
7
6.3
7
86
0
61
18
0
20
61
1.35
10549146--10549192
21
2.2
21
84
0
58
21
2
14
61
1.43
10549387--10549430
15
2.8
16
79
6
54
15
0
25
59
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10550630--10550751
35
3.3
38
81
12
148
33
23
9
32
1.88
10550657--10550751
35
2.7
35
93
0
163
35
25
9
29
1.87
10552128--10552178
21
2.4
21
80
6
59
21
0
21
56
1.42
10552205--10552281
22
3.5
22
82
7
93
12
1
22
63
1.36
10552377--10552427
23
2.3
23
86
10
70
21
3
23
50
1.65
10552516--10552561
14
3.2
14
81
6
56
10
0
17
71
1.13
10554030--10554063
17
2.0
17
100
0
68
29
23
11
35
1.90
10557486--10557534
25
2.0
25
92
4
82
55
2
0
42
1.11
10562834--10562889
23
2.5
20
74
23
51
30
1
1
66
1.12
10568620--10568672
27
1.9
28
92
3
90
30
11
7
50
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335