Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  113  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34743869--34744636
209
3.7
210
88
2
1023
31
18
21
28
1.97
34745783--34746007
3
73.7
3
65
24
64
33
4
1
60
1.25
34745787--34745957
19
8.8
19
67
26
76
33
2
1
61
1.21
34745858--34745978
35
3.5
34
76
13
113
33
1
2
61
1.19
34745928--34745977
19
2.7
19
87
9
68
36
2
2
60
1.20
34745868--34745999
18
6.7
20
70
25
86
33
3
2
61
1.24
34746023--34746072
24
2.0
25
88
3
75
34
2
0
64
1.05
34748773--34748820
24
2.0
24
88
8
71
33
10
0
56
1.34
34754412--34754551
40
3.5
40
83
3
149
22
28
25
22
1.99
34756539--34756578
21
1.9
21
85
10
55
77
7
10
5
1.11
34758256--34758386
64
2.0
64
94
2
228
31
17
12
38
1.88
34758594--34759208
176
3.5
175
88
2
860
32
18
23
26
1.97
34761045--34761093
18
2.7
18
80
0
62
30
0
8
61
1.25
34766169--34766198
12
2.5
12
88
0
51
20
23
36
20
1.95
34771759--34771796
17
2.2
18
85
4
51
63
18
2
15
1.43
34773185--34773218
14
2.4
14
100
0
68
55
8
35
0
1.31
34777462--34777487
10
2.6
10
100
0
52
34
7
0
57
1.27
34795948--34796050
38
2.7
37
85
4
125
30
15
19
34
1.93
34796800--34796844
17
2.7
16
86
6
54
57
0
4
37
1.19
34807732--34807860
40
3.3
39
82
7
111
23
26
25
24
2.00
34807767--34807913
78
1.9
80
85
5
210
24
27
23
24
2.00
34807748--34807913
40
4.2
37
77
9
125
24
27
24
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34814007--34814190
78
2.3
80
81
9
207
24
26
24
25
2.00
34814007--34814190
40
4.6
39
76
8
165
24
26
24
25
2.00
34818211--34818516
133
2.3
134
82
6
386
33
17
20
28
1.96
34818273--34818487
44
4.9
42
72
11
153
35
17
20
26
1.95
34818522--34818801
94
3.0
93
76
3
229
34
17
18
29
1.94
34819747--34819827
26
3.2
26
92
1
128
32
6
23
38
1.80
34825181--34825691
48
10.9
48
81
7
513
31
27
7
33
1.84
34825181--34825690
96
5.5
96
88
6
742
31
27
7
33
1.85
34825284--34825358
35
2.1
35
97
0
141
30
29
8
32
1.86
34825274--34825358
35
2.5
33
83
11
107
31
28
7
32
1.84
34825319--34825691
144
2.6
144
91
2
597
30
27
7
33
1.85
34832205--34832312
26
4.2
26
89
2
155
33
6
22
37
1.80
34832205--34832312
52
2.1
52
91
0
171
33
6
22
37
1.80
34833800--34833852
26
2.0
26
82
7
63
39
20
15
24
1.91
34836858--34836921
12
5.3
12
82
0
65
18
6
14
60
1.54
34836870--34837017
6
23.7
6
72
10
82
20
8
15
54
1.67
34836858--34836930
18
4.1
18
84
7
94
20
6
13
58
1.58
34837479--34837551
37
2.0
37
100
0
146
31
2
32
32
1.72
34839199--34839300
40
2.5
40
95
0
177
20
10
22
46
1.82
34839279--34839338
29
2.1
27
87
6
84
23
6
15
55
1.64
34840708--34840738
16
1.9
16
100
0
62
38
19
16
25
1.92
34840716--34840799
36
2.3
38
87
4
118
45
22
10
21
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34840744--34840820
36
2.1
36
85
4
102
48
24
9
18
1.77
34841162--34841212
3
17.3
3
81
4
59
1
35
0
62
1.06
34841166--34841205
20
2.0
21
95
5
73
2
40
0
57
1.12
34852383--34852796
217
1.9
216
81
4
494
36
20
18
24
1.95
34868862--34868947
33
2.6
31
79
17
84
45
3
2
48
1.32
34869745--34869788
21
2.1
21
82
0
52
31
4
6
56
1.46
34869864--34869892
15
2.0
15
93
6
51
68
0
0
31
0.89
34870299--34870323
12
2.1
12
100
0
50
76
0
0
24
0.80
34876152--34876207
26
2.2
26
100
0
112
35
26
7
30
1.83
34883182--34883237
26
2.2
26
100
0
112
35
26
7
30
1.83
34884132--34884213
42
2.0
42
90
0
128
23
19
6
51
1.69
34891796--34891904
58
1.9
57
83
9
141
26
18
22
32
1.97
34891796--34891918
58
2.1
57
80
7
133
28
17
23
30
1.97
34894934--34895413
44
10.7
44
68
13
239
32
17
22
28
1.96
34895109--34895448
179
1.9
178
83
6
445
32
18
20
27
1.96
34897604--34897647
21
2.2
20
83
4
52
27
4
2
65
1.23
34898741--34898817
36
2.2
35
83
6
93
68
6
16
7
1.35
34902595--34902622
5
5.6
5
100
0
56
17
0
0
82
0.68
34908692--34908783
39
2.4
39
94
0
157
23
22
29
23
1.99
34910885--34910944
31
1.9
32
96
3
113
21
13
33
31
1.92
34919554--34919652
39
2.5
39
91
0
153
22
22
30
25
1.99
34926570--34926617
22
2.2
22
85
3
62
66
20
2
10
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34928174--34928265
26
3.6
24
72
17
69
30
8
2
58
1.40
34928349--34928458
49
2.3
47
84
7
134
26
8
5
60
1.47
34934676--34934700
12
2.1
12
100
0
50
48
8
0
44
1.32
34942092--34942156
30
2.2
30
86
5
87
29
26
3
41
1.71
34944178--34944219
21
2.0
21
90
0
66
40
47
9
2
1.49
34944354--34944410
25
2.3
23
81
18
71
43
0
3
52
1.18
34944797--34944840
10
4.4
10
88
0
70
22
11
0
65
1.24
34947262--34947291
13
2.3
13
100
0
60
26
16
26
30
1.97
34948602--34948649
25
1.9
25
100
0
96
39
25
8
27
1.84
34951972--34952005
17
2.0
17
88
0
50
70
5
8
14
1.31
34952179--34952208
12
2.5
12
94
0
51
40
0
20
40
1.52
34952217--34952309
48
2.0
47
93
2
159
51
7
8
32
1.60
34958008--34958060
27
2.0
27
100
0
106
33
5
11
49
1.62
34967267--34967297
16
1.9
16
93
0
53
64
3
12
19
1.41
34968742--34968780
19
2.1
19
85
9
53
20
48
20
10
1.78
34992552--34992591
19
2.0
21
85
9
57
40
2
2
55
1.27
34996819--34996923
45
2.3
45
88
0
147
23
26
15
34
1.94
34996944--34997230
78
3.7
78
84
2
407
25
25
18
31
1.98
34996944--34997230
155
1.8
156
90
2
461
25
25
18
31
1.98
34997312--34997517
78
2.6
78
90
0
322
25
24
18
32
1.97
34997025--34997724
286
2.5
286
92
0
1152
25
23
19
31
1.98
34997398--34997819
207
2.0
209
91
1
679
25
22
18
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35009492--35009520
2
14.5
2
100
0
58
51
0
0
48
1.00
35013255--35013296
16
2.6
16
80
0
57
50
0
0
50
1.00
35013289--35013328
19
2.0
20
85
4
55
42
0
7
50
1.30
35013384--35013412
13
2.1
14
93
6
51
58
0
0
41
0.98
35017398--35017426
13
2.1
14
93
6
51
41
0
0
58
0.98
35021534--35021742
104
2.0
104
97
0
391
26
22
23
27
1.99
35023842--35023872
2
15.5
2
100
0
62
51
0
0
48
1.00
35024279--35024320
19
2.0
22
86
13
63
59
9
11
19
1.59
35027629--35027681
25
2.1
26
82
10
65
24
15
22
37
1.92
35027646--35027694
25
2.0
25
87
0
71
24
16
22
36
1.94
35029151--35029259
26
4.2
26
92
2
193
37
25
4
32
1.76
35029151--35029259
51
2.1
52
94
1
193
37
25
4
32
1.76
35031728--35031756
14
2.0
15
93
6
51
48
6
13
31
1.69
35032237--35032268
11
2.9
11
100
0
64
46
0
34
18
1.49
35035462--35035504
11
3.8
11
82
11
52
69
2
2
25
1.12
35036872--35036940
27
2.5
28
77
11
72
30
2
1
65
1.16
35038676--35038715
12
3.3
12
86
6
55
52
10
0
37
1.35
35040469--35040535
27
2.4
27
95
5
116
44
2
38
13
1.59
35044102--35044150
21
2.3
21
89
0
71
26
0
28
44
1.54
35046123--35046170
20
2.5
20
86
3
62
64
2
6
27
1.28
35051021--35051128
44
2.4
44
87
3
144
29
23
13
33
1.93
35054001--35054032
10
3.3
10
95
4
57
62
0
6
31
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35054028--35054090
27
2.3
26
76
10
63
50
11
0
38
1.38
35054057--35054086
15
2.0
15
93
0
51
40
10
0
50
1.36
35057408--35057511
42
2.5
42
79
0
109
41
17
25
15
1.89
35057422--35057526
42
2.5
42
77
0
102
41
16
23
18
1.89
35057635--35057675
19
2.2
19
100
0
82
31
14
7
46
1.72
35057764--35057802
2
19.5
2
94
0
69
48
0
2
48
1.15
35057821--35057851
2
15.5
2
100
0
62
51
48
0
0
1.00
35062240--35062281
22
1.9
22
85
0
57
2
14
2
80
0.90
35069836--35069863
2
14.0
2
100
0
56
50
0
0
50
1.00
35070982--35071036
27
2.1
26
83
10
67
41
1
0
56
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335