genome.fa.s5.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  154  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45231880--45231909	14	2.1	14	93	0	51	16	0	36	46	1.47
45238481--45238610	40	3.2	40	79	4	147	24	27	23	23	2.00
45240628--45240719	27	3.4	27	88	5	132	29	25	6	39	1.81
45240723--45240873	27	5.7	27	82	6	114	40	20	9	29	1.85
45240718--45240898	54	3.5	51	77	8	177	40	19	9	30	1.84
45240751--45240897	27	5.6	27	84	8	178	41	21	8	29	1.81
45240875--45240956	29	2.9	28	82	8	87	41	13	8	36	1.75
45240759--45240960	27	7.6	27	77	11	121	39	17	9	33	1.82
45240751--45240955	106	2.0	104	86	3	286	40	18	8	32	1.80
45241001--45241074	27	2.7	27	76	12	71	37	20	20	21	1.94
45241014--45241078	27	2.4	27	82	5	78	35	18	24	21	1.96
45241888--45241957	25	2.8	24	86	4	95	24	27	22	25	2.00
45242105--45242196	42	2.2	42	92	3	150	31	14	20	33	1.92
45242220--45242329	31	3.5	31	97	0	202	27	17	27	28	1.97
45249203--45249273	24	3.0	24	85	2	90	29	23	4	42	1.73
45258448--45258487	18	2.2	18	86	0	53	12	15	45	27	1.82
45260471--45260514	11	4.0	11	96	0	79	0	29	0	70	0.88
45260474--45260514	6	7.3	6	78	15	52	0	31	0	68	0.90
45260518--45260571	17	3.2	16	81	7	54	9	14	11	64	1.48
45260828--45260892	18	3.5	18	69	8	58	24	16	12	46	1.82
45260821--45260897	38	2.0	38	100	0	154	27	18	12	41	1.87
45267086--45267131	23	2.0	23	95	0	83	50	30	6	13	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45267104--45267155	27	1.9	27	84	0	68	50	30	5	13	1.65
45272569--45272691	4	30.8	4	66	12	56	21	10	2	65	1.36
45272777--45272818	21	2.0	21	95	0	75	26	9	2	61	1.39
45272772--45272815	21	2.1	22	87	8	65	25	9	2	63	1.35
45272903--45272932	3	10.0	3	92	0	51	33	3	0	63	1.11
45272902--45272931	15	2.0	15	100	0	60	33	6	0	60	1.23
45273511--45273618	26	4.2	26	93	0	180	33	7	23	36	1.83
45274872--45275017	40	3.7	40	91	1	213	29	26	20	23	1.99
45280257--45280297	22	2.0	20	85	9	55	63	0	7	29	1.21
45284549--45284603	28	2.0	28	88	0	83	20	16	32	30	1.94
45286361--45286392	15	2.1	15	94	0	55	28	9	25	37	1.87
45287261--45287310	19	2.5	20	84	15	61	72	2	12	14	1.22
45288301--45288345	21	2.2	20	84	4	54	22	0	8	68	1.16
45292080--45292117	2	19.5	2	83	5	51	50	0	0	50	1.00
45297955--45298425	70	6.7	70	81	3	437	24	16	25	34	1.95
45297927--45298421	140	3.5	140	79	4	498	24	16	24	34	1.95
45302582--45302748	35	4.6	35	85	7	201	33	24	10	31	1.90
45302577--45302748	75	2.4	73	84	8	226	33	23	11	31	1.90
45308852--45308886	2	18.0	2	94	5	63	51	0	48	0	1.00
45311781--45311805	2	12.5	2	100	0	50	52	48	0	0	1.00
45315267--45315307	22	1.9	22	90	5	66	43	0	2	53	1.13
45315411--45315491	38	2.0	40	86	6	112	39	2	7	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45315548--45315586	2	19.5	2	100	0	78	48	0	0	51	1.00
45316248--45316307	30	2.0	30	90	0	93	58	13	0	28	1.36
45316635--45316681	24	1.9	24	86	4	67	53	4	4	38	1.40
45318684--45318717	18	1.9	17	88	5	50	14	0	14	70	1.17
45326430--45326840	188	2.2	189	90	1	646	32	25	12	30	1.92
45327669--45327708	8	5.2	8	88	11	57	80	0	17	2	0.83
45327899--45327928	3	10.0	3	100	0	60	66	0	33	0	0.92
45329109--45329153	24	1.9	23	90	9	65	22	0	6	71	1.09
45340613--45340846	48	5.0	48	77	7	246	28	23	20	27	1.99
45340613--45340846	91	2.5	94	84	3	285	28	23	20	27	1.99
45341185--45341243	30	2.0	30	82	0	73	40	25	3	30	1.72
45342837--45342878	22	2.0	21	85	4	57	26	0	21	52	1.47
45343321--45343373	23	2.2	24	80	3	63	22	22	15	39	1.91
45348830--45348939	40	2.8	40	85	0	148	23	26	23	26	2.00
45356884--45356993	40	2.8	40	85	0	148	23	26	23	26	2.00
45359575--45359600	12	2.2	12	100	0	52	26	23	7	42	1.81
45367265--45367290	12	2.2	12	100	0	52	26	23	7	42	1.81
45369972--45370119	43	3.5	42	78	5	138	29	16	22	31	1.96
45372673--45372770	27	3.6	27	87	0	133	30	15	17	36	1.91
45372673--45372784	27	4.1	27	83	2	100	30	17	16	35	1.92
45372673--45372800	54	2.4	54	84	2	141	32	16	16	34	1.91
45372916--45372965	23	2.2	23	86	13	68	26	14	18	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45373592--45373681	33	2.7	33	89	3	137	26	21	16	35	1.94
45373892--45374071	31	5.8	31	83	0	243	28	27	17	26	1.97
45374051--45374220	50	3.4	50	83	0	214	27	22	15	34	1.94
45380746--45380793	21	2.3	21	81	0	51	45	2	16	35	1.59
45380915--45380956	22	2.0	21	90	4	66	26	0	23	50	1.50
45386219--45386377	43	3.7	43	80	9	164	24	17	25	32	1.97
45388908--45389037	40	3.3	39	77	8	136	25	26	23	24	2.00
45388924--45389075	40	3.8	40	79	6	148	23	25	23	27	2.00
45388924--45389075	80	1.9	80	82	8	193	23	25	23	27	2.00
45396290--45396330	19	2.3	19	88	12	61	43	0	17	39	1.49
45396956--45397064	49	2.2	49	82	6	132	29	19	28	22	1.98
45399521--45399566	19	2.4	19	82	7	58	39	2	17	41	1.62
45400092--45400248	44	3.7	42	77	12	151	25	18	24	31	1.98
45400092--45400248	43	3.7	42	80	5	138	25	18	24	31	1.98
45400431--45400463	17	1.9	17	100	0	66	48	18	0	33	1.48
45401986--45402106	47	2.6	45	82	13	147	29	17	29	23	1.97
45401986--45402140	46	3.3	46	81	7	179	30	18	28	22	1.97
45407519--45407566	25	1.9	25	86	0	69	33	25	16	25	1.96
45407610--45407673	20	3.2	20	95	0	110	34	10	21	32	1.89
45407614--45407668	11	5.4	11	70	16	55	36	12	20	30	1.90
45407720--45407885	23	7.1	23	93	2	269	28	22	21	28	1.99
45407720--45407906	47	4.0	46	90	4	277	27	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45407718--45407907	70	2.7	70	90	3	274	28	22	21	27	1.99
45408098--45408161	31	2.1	31	96	0	119	39	15	21	23	1.92
45414333--45414380	25	1.9	25	86	0	69	33	25	16	25	1.96
45414417--45414491	5	15.0	5	73	20	50	34	6	22	36	1.81
45414418--45414491	9	8.0	9	73	16	62	33	6	22	36	1.81
45414444--45414498	11	5.4	11	70	16	55	36	12	20	30	1.90
45414424--45414503	20	4.2	19	90	6	112	35	8	22	33	1.85
45414549--45414709	23	7.1	23	90	6	258	27	21	21	28	1.99
45414549--45414730	46	4.0	46	86	9	257	27	21	22	28	1.99
45414922--45414984	31	2.1	31	93	3	110	38	15	22	23	1.93
45416920--45417086	40	4.2	40	81	2	176	24	27	22	25	2.00
45416936--45417086	80	1.9	79	83	6	198	23	27	22	25	2.00
45424921--45425087	40	4.2	40	79	2	158	23	27	22	26	2.00
45432943--45433011	33	2.1	33	97	0	129	28	21	8	40	1.83
45434246--45434290	17	2.6	18	83	16	60	48	4	0	46	1.22
45434246--45434291	19	2.7	17	83	16	60	50	4	0	45	1.21
45435180--45435339	30	5.4	29	76	6	133	35	11	25	28	1.90
45435237--45435399	30	5.4	30	73	12	111	37	12	26	23	1.90
45435179--45435443	90	3.0	88	81	6	268	35	13	26	24	1.92
45435180--45435428	29	8.3	30	74	13	124	36	12	26	25	1.91
45436802--45436968	92	1.8	91	82	5	203	29	18	16	35	1.93
45442564--45442605	21	2.0	20	86	13	59	66	11	0	21	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45442568--45442602	18	1.9	18	100	0	70	68	8	0	22	1.16
45449044--45449158	27	4.3	26	88	7	142	37	23	21	17	1.94
45449262--45449349	27	3.3	27	79	4	99	31	12	22	32	1.91
45455358--45455404	23	2.0	23	87	0	67	31	6	21	40	1.78
45455767--45455791	13	1.9	13	100	0	50	48	0	0	52	1.00
45458261--45458417	43	3.7	43	77	6	183	33	24	15	27	1.95
45459991--45460078	15	6.0	15	73	5	63	30	18	20	30	1.96
45460113--45460176	33	1.9	34	90	3	103	32	20	15	31	1.94
45463264--45463308	22	2.0	22	86	0	63	22	6	15	55	1.63
45466094--45466276	49	3.7	49	82	4	242	24	19	26	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335