genome.fa.s5.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  111  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34306586--34306633	25	1.9	25	86	0	69	25	16	25	33	1.96
34308505--34308572	34	2.0	34	88	0	100	22	26	20	30	1.98
34311512--34311756	43	5.7	43	78	3	174	32	28	16	22	1.96
34311512--34311799	85	3.4	85	75	2	204	32	28	15	23	1.96
34312435--34312773	70	4.9	70	77	13	349	37	22	5	34	1.77
34312423--34312713	161	1.8	160	87	2	440	38	22	5	33	1.76
34312435--34313273	69	12.2	70	71	14	428	38	23	5	33	1.77
34312437--34313273	23	36.5	22	71	14	369	37	23	5	33	1.77
34312853--34313184	137	2.4	137	93	0	565	37	22	4	34	1.75
34312927--34313137	68	3.1	68	72	14	225	39	23	4	33	1.74
34312435--34313273	46	18.3	46	74	10	517	38	23	5	33	1.77
34315874--34315913	19	2.1	19	90	0	62	22	0	35	42	1.54
34316798--34316853	7	8.3	7	75	15	55	33	44	0	21	1.52
34316789--34316856	21	3.3	21	76	13	61	35	42	0	22	1.54
34316851--34316967	7	16.4	7	68	10	58	47	29	0	23	1.58
34316851--34316967	14	8.2	14	74	7	74	47	29	0	23	1.58
34317274--34317359	40	2.2	40	89	4	129	26	22	18	32	1.97
34317459--34317554	40	2.4	39	79	6	111	27	18	18	35	1.95
34328446--34329129	175	4.0	173	81	6	696	31	16	23	28	1.96
34328446--34328973	170	3.1	170	85	5	693	31	17	23	28	1.97
34335573--34335739	40	4.2	40	80	5	169	23	27	23	25	2.00
34343606--34343773	40	4.2	40	81	1	185	24	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34353344--34353434	25	3.6	25	89	0	137	25	24	25	25	2.00
34353327--34353435	50	2.2	48	88	6	164	26	24	22	26	2.00
34353637--34353933	27	11.0	27	89	2	400	25	21	18	35	1.95
34353953--34354131	27	6.6	27	82	0	187	30	8	18	42	1.80
34353962--34354131	81	2.1	81	85	2	225	30	8	18	42	1.80
34354123--34354414	27	10.8	27	86	0	359	38	8	22	30	1.83
34354006--34354155	81	1.9	81	80	2	176	32	7	18	41	1.78
34358441--34358504	27	2.4	27	91	0	101	35	15	7	40	1.76
34358495--34358701	80	2.6	81	85	5	260	42	21	7	28	1.79
34358495--34358813	27	11.8	27	81	4	275	42	20	7	29	1.79
34358844--34358935	27	3.4	27	84	0	112	32	18	26	22	1.97
34359744--34359813	25	2.8	25	86	4	88	28	22	21	27	1.99
34359760--34359826	25	2.7	25	76	19	61	29	20	22	26	1.99
34359961--34360048	42	2.1	42	89	0	131	31	13	18	36	1.90
34360076--34360185	31	3.5	31	96	0	193	30	18	23	27	1.97
34363535--34363702	61	2.6	66	82	10	215	45	16	24	13	1.83
34364812--34365479	170	3.9	172	85	5	823	31	17	23	26	1.97
34364812--34365377	170	3.3	171	87	4	825	32	18	23	25	1.97
34364807--34365544	346	2.1	345	84	4	936	32	17	23	26	1.97
34367351--34367385	2	17.5	2	93	0	61	48	2	0	48	1.16
34371150--34371197	21	2.3	22	78	10	55	14	25	37	22	1.92
34373931--34374023	39	2.4	39	94	1	161	23	22	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34373932--34374042	39	2.8	39	89	2	125	23	25	29	21	1.99
34377837--34377897	21	2.9	22	80	7	72	14	29	34	21	1.93
34381360--34381434	30	2.5	30	91	0	114	30	20	21	28	1.98
34381399--34381470	36	2.0	36	83	5	92	26	18	26	29	1.98
34381366--34381500	30	4.3	30	72	14	83	26	18	27	27	1.98
34381369--34381548	66	2.7	66	81	3	211	27	15	26	30	1.96
34393694--34393801	26	4.2	26	93	0	189	32	7	24	36	1.83
34395416--34395583	27	6.2	27	86	5	216	17	22	23	36	1.95
34395416--34395583	54	3.1	54	90	3	250	17	22	23	36	1.95
34395416--34395583	81	2.1	81	88	4	250	17	22	23	36	1.95
34397550--34397577	12	2.3	12	100	0	56	32	14	10	42	1.80
34399664--34399793	21	6.2	21	69	3	82	16	21	20	42	1.89
34399664--34399798	42	3.2	42	83	0	162	15	21	20	42	1.88
34403951--34404050	52	1.9	52	93	0	173	25	14	12	49	1.77
34404389--34404456	34	2.0	34	97	0	127	41	13	2	42	1.59
34410501--34410610	39	2.8	39	94	2	186	23	31	20	23	1.98
34418669--34418778	39	2.8	39	95	2	195	23	32	20	22	1.98
34421339--34421463	61	2.0	61	92	0	205	38	18	18	24	1.93
34421959--34421984	13	2.0	13	100	0	52	23	23	23	30	1.99
34425537--34425579	4	10.8	4	89	0	68	27	2	20	48	1.62
34425575--34425619	23	2.0	23	91	4	74	6	4	6	82	0.95
34426605--34426645	6	6.5	6	83	10	55	80	0	4	14	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34428134--34428188	22	2.5	20	75	16	56	67	0	3	29	1.08
34428173--34428646	247	1.9	248	92	1	799	33	7	41	17	1.78
34438844--34438879	2	18.5	2	94	5	65	50	0	0	50	1.00
34438879--34438926	2	24.0	2	100	0	96	0	0	50	50	1.00
34439081--34439137	15	3.9	15	88	2	89	35	0	12	52	1.39
34439077--34439135	30	2.0	28	93	6	100	32	0	11	55	1.36
34439692--34439732	19	2.2	19	87	12	59	46	0	24	29	1.53
34440963--34440988	5	5.2	5	100	0	52	42	0	0	57	0.98
34454843--34454944	27	3.6	28	88	5	134	28	12	26	32	1.93
34459556--34459663	26	4.2	26	93	0	189	36	24	7	32	1.83
34465177--34465223	19	2.5	19	100	0	94	19	31	12	36	1.89
34466555--34466662	26	4.2	26	93	0	189	36	24	7	32	1.83
34476286--34476400	29	4.0	29	79	1	133	25	31	14	28	1.95
34476288--34476400	58	2.0	57	85	5	156	24	30	15	29	1.95
34477257--34477366	26	4.2	26	91	2	168	34	4	23	37	1.75
34478984--34479124	27	5.2	27	81	11	173	18	25	21	34	1.96
34478981--34479124	54	2.7	54	92	2	227	18	25	22	34	1.96
34483110--34483218	26	4.2	26	95	1	184	33	4	24	36	1.76
34484833--34484973	27	5.2	27	82	11	182	18	24	22	34	1.96
34484830--34484973	54	2.7	54	93	2	236	18	25	22	34	1.96
34484833--34484991	27	5.9	26	83	7	149	19	25	21	33	1.97
34484833--34484990	81	2.0	80	85	8	214	19	25	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34490522--34490590	21	3.3	20	75	18	61	59	2	5	31	1.36
34490531--34490641	10	10.6	10	67	25	61	56	0	6	36	1.31
34492188--34493000	44	18.4	44	83	2	891	29	27	14	29	1.95
34499115--34499260	76	1.9	76	98	0	283	26	15	17	41	1.88
34504789--34504835	5	9.0	5	90	9	76	78	0	0	21	0.75
34505134--34505219	12	7.7	12	72	15	53	56	0	4	38	1.20
34505105--34505219	10	10.6	10	68	24	56	55	0	6	36	1.33
34505146--34505217	25	2.8	25	81	12	85	55	0	5	38	1.23
34507052--34507166	29	4.0	30	75	13	109	26	28	14	29	1.95
34507237--34507273	19	2.0	18	89	5	56	18	40	16	24	1.90
34507389--34507441	24	2.2	24	89	0	79	13	20	13	52	1.73
34521004--34521046	22	2.0	22	100	0	86	30	18	9	41	1.82
34522765--34522897	18	7.5	18	88	5	200	39	11	12	36	1.79
34522756--34522897	35	4.0	35	95	2	239	38	10	13	37	1.79
34523202--34523235	12	2.9	11	87	12	50	35	0	0	64	0.94
34523200--34523230	16	2.0	16	93	6	55	35	0	0	64	0.94
34523224--34523296	30	2.5	30	97	2	139	38	2	0	58	1.12
34523281--34523387	7	15.7	7	69	18	50	38	4	0	57	1.20
34523275--34523329	25	2.1	26	83	12	69	34	3	0	61	1.13
34523289--34523423	21	6.7	21	67	17	65	36	5	0	57	1.23
34529041--34529092	14	3.7	14	92	0	86	86	1	9	1	0.72
34530136--34530616	119	4.0	119	92	0	782	34	18	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34530540--34530888	83	4.2	83	91	3	562	32	21	19	26	1.97
34530540--34530889	167	2.1	162	91	2	556	32	21	19	26	1.97
34531282--34531397	18	6.5	18	88	4	164	38	10	12	37	1.78
34531273--34531397	35	3.5	36	91	3	182	38	9	13	38	1.78
34531282--34531397	53	2.2	53	90	4	180	38	10	12	37	1.78
34531703--34531733	12	2.5	13	89	10	55	35	0	0	64	0.94
34531701--34531812	21	5.5	21	67	19	67	36	2	0	59	1.17
34531698--34531728	16	2.0	16	93	6	55	35	0	0	64	0.94
34531749--34531855	7	15.7	7	71	18	59	38	3	0	57	1.16
34531753--34531817	21	3.1	21	80	8	71	33	3	0	63	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335