genome.fa.s5.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  165  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48573844--48574002	32	4.9	32	88	2	203	30	10	22	35	1.88
48579925--48580248	48	6.8	48	86	2	384	27	17	28	26	1.98
48579925--48580248	144	2.2	143	85	3	425	27	17	28	26	1.98
48581538--48581584	22	2.1	22	88	0	67	12	23	31	31	1.92
48581865--48581900	15	2.4	15	90	0	54	36	5	0	58	1.22
48583918--48583968	18	2.8	18	81	3	57	50	0	0	49	1.00
48587635--48587744	44	2.5	45	93	1	186	33	10	10	46	1.71
48588403--48588531	58	2.2	59	87	4	181	51	3	1	43	1.29
48588403--48588545	59	2.4	58	85	6	182	51	3	2	42	1.30
48590745--48590793	24	2.0	24	100	0	98	38	0	24	36	1.56
48599425--48599463	19	2.1	19	85	0	51	2	30	0	66	1.05
48600516--48600540	2	12.5	2	100	0	50	48	0	0	52	1.00
48602062--48602092	2	15.5	2	100	0	62	51	0	0	48	1.00
48603558--48603599	22	1.9	22	85	9	59	66	9	7	16	1.42
48604270--48604310	21	2.0	21	90	0	64	17	12	17	53	1.72
48604576--48604644	32	2.2	32	100	0	138	40	2	26	30	1.70
48608008--48608047	20	2.0	20	100	0	80	35	5	20	40	1.74
48608288--48608342	21	2.6	21	82	2	56	12	12	16	58	1.64
48608309--48608352	22	2.0	22	81	0	52	15	18	13	52	1.75
48608552--48608585	17	1.9	18	88	5	52	44	0	0	55	0.99
48612133--48612167	13	2.7	13	86	0	52	40	2	0	57	1.14
48614348--48614435	41	2.1	42	85	2	115	26	2	11	60	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48614446--48614499	18	2.9	19	71	17	60	24	7	16	51	1.69
48619915--48619958	23	1.9	23	90	0	70	38	2	0	59	1.10
48627305--48627348	20	2.3	18	80	7	52	77	6	0	15	0.97
48631691--48631966	39	7.1	39	91	0	426	22	25	28	23	1.99
48634182--48634237	24	2.3	24	84	6	69	12	14	25	48	1.78
48634760--48634821	28	2.2	28	91	0	97	35	14	24	25	1.93
48642702--48642726	13	1.9	13	100	0	50	36	0	8	56	1.29
48642680--48642819	70	2.0	71	94	1	246	39	2	7	50	1.43
48642709--48642819	32	3.3	32	66	18	89	36	2	7	53	1.43
48642738--48642902	89	1.9	89	86	5	237	36	1	7	53	1.41
48645527--48645558	15	2.2	14	94	5	55	0	9	0	90	0.45
48646884--48646925	13	3.3	13	83	6	59	47	0	2	50	1.14
48647566--48647624	22	2.7	22	81	0	64	30	22	18	28	1.97
48648295--48648334	19	2.1	19	90	9	64	47	2	5	45	1.38
48648283--48648354	20	3.5	20	80	18	67	43	1	4	51	1.29
48649939--48650023	42	2.0	42	95	0	152	48	7	10	34	1.65
48660515--48660553	21	1.9	20	84	5	51	12	7	0	79	0.93
48674503--48674549	18	2.6	18	80	6	51	44	17	0	38	1.48
48675993--48676158	43	3.9	43	78	5	158	33	25	13	27	1.94
48678797--48678948	40	3.8	40	78	8	132	23	23	28	24	2.00
48680824--48680877	27	2.0	27	96	0	99	25	27	22	24	2.00
48686867--48687019	40	3.8	40	81	6	159	23	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48688381--48688409	13	2.1	14	93	6	51	17	20	48	13	1.81
48693442--48693466	13	1.9	13	100	0	50	20	24	32	24	1.98
48696056--48696104	8	6.1	8	87	0	62	63	0	0	36	0.95
48696056--48696099	16	2.8	16	96	0	79	61	0	0	38	0.96
48696042--48696084	21	2.0	22	86	8	63	58	0	2	39	1.11
48696087--48696122	17	2.1	17	90	10	56	77	0	0	22	0.76
48700597--48700829	39	6.0	39	93	0	385	24	29	25	21	1.99
48706789--48706856	27	2.5	28	95	2	120	27	14	26	30	1.95
48706789--48706868	27	2.9	27	85	9	74	28	16	23	31	1.96
48714662--48714731	27	2.5	28	95	2	124	28	14	27	30	1.95
48714662--48714743	27	3.0	27	85	8	78	29	15	24	30	1.96
48718023--48718252	46	4.9	48	69	9	147	28	18	29	23	1.98
48718130--48718249	48	2.6	48	79	13	135	29	20	27	23	1.98
48720935--48720976	8	5.2	8	85	0	57	57	0	2	40	1.12
48720968--48721014	22	2.1	23	84	4	60	72	2	12	12	1.21
48732886--48733135	40	6.2	40	89	1	376	25	24	28	21	1.99
48739840--48739987	80	1.9	80	80	4	174	22	30	24	22	1.99
48739880--48739987	40	2.7	38	85	8	128	21	29	25	23	1.99
48747845--48747974	40	3.3	39	76	8	136	23	27	23	24	2.00
48747861--48748012	40	3.8	40	79	5	155	21	26	24	26	1.99
48747861--48748010	80	1.9	80	84	5	205	21	27	24	26	1.99
48751979--48752108	43	3.1	42	77	9	140	23	19	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48751990--48752110	41	2.9	41	77	13	133	23	19	26	29	1.98
48754199--48754256	25	2.3	25	96	0	107	34	24	6	34	1.82
48759418--48759445	13	2.2	13	100	0	56	14	25	39	21	1.91
48760339--48760368	12	2.5	12	100	0	60	0	36	0	63	0.95
48763886--48763924	21	1.9	20	89	5	60	46	17	0	35	1.49
48764833--48765033	68	3.0	68	84	0	276	25	23	16	34	1.96
48769277--48769337	31	2.0	31	83	0	77	44	13	18	24	1.85
48769558--48769645	19	4.8	19	69	16	60	39	0	3	56	1.16
48772736--48773451	351	2.0	351	90	0	1135	26	24	26	22	2.00
48777638--48777674	11	3.5	11	88	3	58	72	0	0	27	0.84
48778451--48778487	20	1.9	19	89	10	58	18	2	8	70	1.25
48778754--48778845	27	3.2	29	72	14	68	19	9	18	52	1.73
48778789--48778845	27	2.1	27	87	9	82	19	8	15	56	1.65
48781320--48781373	20	2.6	21	82	11	67	35	0	7	57	1.27
48781359--48781407	3	17.3	3	76	19	52	28	2	0	69	1.00
48781363--48781401	11	3.5	11	92	0	69	28	2	0	69	1.02
48781359--48781400	19	2.2	19	87	8	59	26	2	0	71	0.98
48783454--48783570	23	5.0	23	74	12	103	15	26	24	33	1.95
48786130--48786245	50	2.2	53	86	4	157	24	25	12	37	1.91
48788157--48788231	21	3.8	19	73	18	64	64	2	1	32	1.16
48788198--48788240	8	5.1	8	81	10	50	60	0	0	39	0.97
48788191--48788247	18	3.4	17	86	11	73	64	0	0	35	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48792377--48792436	20	3.1	19	79	13	59	15	28	18	38	1.91
48799717--48799889	46	3.7	46	78	13	201	28	28	21	21	1.98
48799722--48799892	93	1.8	93	93	0	297	28	29	21	21	1.98
48800312--48800371	30	2.0	30	86	0	84	31	25	5	38	1.77
48809645--48809690	3	15.3	3	95	0	83	36	0	30	32	1.58
48810245--48810274	14	2.1	14	93	0	51	40	16	13	30	1.87
48813992--48814059	33	2.1	33	94	0	118	35	17	11	35	1.87
48816197--48816242	19	2.3	20	92	7	85	30	10	10	47	1.73
48817055--48817087	15	2.2	15	94	0	57	39	18	24	18	1.92
48823131--48823180	25	2.0	25	88	7	75	58	4	34	4	1.36
48825307--48825336	12	2.5	12	100	0	60	0	6	0	93	0.35
48828960--48828997	19	2.0	19	100	0	76	26	31	5	36	1.79
48829092--48829139	25	1.9	25	95	0	87	72	4	18	4	1.17
48838462--48838518	21	2.8	20	78	10	62	43	7	5	43	1.54
48858133--48858291	43	3.7	43	76	7	144	28	24	19	27	1.99
48859751--48859918	40	4.2	40	77	1	149	22	26	23	26	2.00
48859767--48859916	80	1.9	80	83	5	196	21	26	24	27	1.99
48883633--48883681	18	2.7	18	90	0	80	34	14	24	26	1.94
48885869--48885913	23	2.0	23	86	8	65	40	0	6	53	1.27
48886822--48886846	2	12.5	2	100	0	50	48	0	0	52	1.00
48897067--48897252	40	4.7	40	86	5	164	26	26	20	25	1.99
48897067--48897252	80	2.3	81	80	9	220	26	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48903886--48904070	40	4.7	40	89	4	236	26	27	21	25	1.99
48906054--48906204	55	2.7	55	84	4	198	50	17	7	25	1.71
48917137--48917320	40	4.6	39	75	6	138	26	23	27	22	2.00
48917177--48917365	80	2.4	81	77	4	186	23	24	29	22	1.99
48925255--48925438	40	4.6	39	75	6	138	26	23	27	22	2.00
48925295--48925483	80	2.4	81	77	4	186	23	24	29	22	1.99
48930762--48930805	19	2.3	19	80	7	54	34	4	0	61	1.16
48932078--48932130	6	8.8	6	100	0	106	67	0	0	32	0.91
48932120--48932225	43	2.3	45	82	9	117	59	1	3	34	1.26
48934598--48934630	17	2.0	17	88	5	50	48	3	0	48	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335