Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  137  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40361957--40362129
46
3.7
46
74
13
174
21
19
27
31
1.97
40361954--40362124
93
1.8
93
91
2
281
21
19
28
30
1.97
40363635--40364045
41
10.0
41
89
2
585
33
20
25
21
1.97
40364297--40364347
15
3.5
15
75
2
50
23
1
27
47
1.63
40364926--40365005
7
11.3
7
76
12
74
76
2
0
21
0.91
40364950--40365018
8
9.1
8
83
12
83
72
1
0
26
0.93
40364949--40365014
29
2.2
29
91
2
105
72
1
0
25
0.93
40364943--40365013
15
4.9
15
84
5
92
76
1
0
22
0.87
40365089--40365126
18
2.2
16
90
9
58
73
0
2
23
0.95
40369185--40369244
29
2.1
29
100
0
120
20
16
23
40
1.91
40369961--40370001
19
2.2
19
86
4
57
21
2
4
70
1.18
40372940--40373051
40
2.8
40
72
2
100
32
23
15
29
1.95
40376379--40376412
12
2.7
13
90
4
52
73
5
0
20
1.04
40377105--40377130
3
8.7
3
100
0
52
0
0
65
34
0.93
40377304--40377328
3
8.3
3
100
0
50
32
36
0
32
1.58
40378228--40379850
540
3.0
540
99
0
3237
36
12
16
34
1.86
40380897--40381073
43
4.2
43
79
4
180
29
29
17
23
1.97
40380897--40381073
84
2.1
84
83
2
219
29
29
17
23
1.97
40383936--40384045
26
4.2
26
96
0
184
33
5
24
36
1.79
40385828--40386113
137
2.1
136
95
0
509
25
18
24
31
1.97
40387326--40387353
2
14.0
2
100
0
56
50
0
0
50
1.00
40389267--40389312
18
2.5
19
82
6
60
34
0
39
26
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40389739--40389778
14
2.8
14
84
3
53
32
45
0
22
1.53
40389810--40389894
7
12.0
7
80
12
75
32
44
1
21
1.60
40389810--40389869
21
2.8
22
84
5
86
31
48
0
20
1.50
40389809--40389894
14
6.0
14
80
5
93
32
45
1
20
1.59
40389892--40389962
7
9.9
7
69
6
52
49
26
0
23
1.51
40389886--40389933
15
3.3
15
82
5
62
45
35
0
18
1.50
40389864--40389938
21
3.5
21
77
1
69
44
33
1
21
1.61
40389959--40390039
7
11.3
7
76
10
74
28
49
0
22
1.50
40389959--40390034
22
3.5
22
89
5
102
27
51
0
21
1.48
40389976--40390016
15
2.8
15
81
3
57
21
51
0
26
1.48
40390031--40390090
14
4.1
15
73
16
54
45
31
0
23
1.53
40390044--40390120
29
2.7
30
78
17
83
48
29
0
22
1.51
40390024--40390090
22
3.1
20
74
20
55
44
32
0
22
1.53
40390284--40390314
16
1.9
16
93
0
53
25
0
0
74
0.82
40390429--40390574
39
3.7
38
81
9
161
28
19
21
30
1.98
40390638--40390733
40
2.4
40
84
5
115
26
22
25
26
2.00
40390655--40390747
39
2.3
40
85
1
116
25
21
23
29
1.99
40392003--40392047
3
15.0
3
90
0
72
71
0
0
28
0.87
40392132--40392194
11
6.1
10
78
14
58
74
1
4
19
1.08
40392269--40392323
3
18.3
3
92
0
92
65
0
1
32
1.03
40394753--40394793
20
2.0
20
90
0
64
26
9
31
31
1.89
40397532--40397690
27
5.9
27
80
11
166
35
21
23
19
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40397550--40397690
54
2.6
54
92
2
221
35
22
23
18
1.96
40399288--40399343
26
2.2
26
93
0
94
37
25
5
32
1.78
40400092--40400126
19
1.9
17
88
11
52
14
0
31
54
1.40
40400149--40400189
16
2.5
17
77
22
52
58
0
0
41
0.98
40400292--40400680
126
3.1
126
85
3
498
35
16
18
29
1.93
40403650--40403782
56
2.4
56
92
0
221
51
6
3
38
1.44
40404180--40404221
18
2.3
18
91
0
66
42
2
28
26
1.67
40404837--40404873
7
5.3
7
93
0
65
59
10
0
29
1.31
40405821--40405919
47
2.0
48
86
5
137
57
3
6
33
1.38
40406857--40406996
60
2.3
59
81
8
156
48
12
12
27
1.76
40407408--40407447
20
2.1
19
85
4
53
45
0
0
55
0.99
40407464--40407503
18
2.2
18
86
0
53
25
5
5
65
1.34
40410129--40410162
17
2.0
17
88
11
52
44
0
0
55
0.99
40413859--40413912
23
2.2
23
83
9
63
38
1
0
59
1.08
40413859--40413948
48
1.9
45
80
13
101
36
2
0
61
1.09
40413883--40414021
25
5.8
24
73
16
103
35
5
0
58
1.22
40414000--40414064
24
2.8
24
71
15
64
33
3
0
63
1.10
40414079--40414155
30
2.5
31
79
20
92
32
10
1
55
1.42
40414720--40414761
21
2.0
21
100
0
84
23
14
4
57
1.56
40426185--40426731
207
2.6
207
93
0
907
30
18
22
28
1.97
40430862--40431347
44
11.2
44
67
10
255
18
24
22
35
1.96
40430820--40431345
87
6.0
87
92
0
845
18
23
22
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40445960--40446011
10
5.2
10
80
15
54
34
1
0
63
1.06
40445959--40446128
8
22.0
8
68
20
87
34
5
0
60
1.20
40445978--40446134
81
1.9
86
81
6
198
33
6
0
59
1.23
40446005--40446180
49
3.8
47
72
17
127
34
7
0
57
1.26
40446142--40446218
30
2.5
31
82
13
99
32
9
1
57
1.38
40452741--40452954
101
2.1
102
92
0
349
32
13
23
30
1.93
40452736--40452951
51
4.3
51
92
1
335
32
13
23
30
1.93
40460399--40460481
40
2.1
40
81
4
96
37
21
16
24
1.94
40462514--40462562
14
3.8
13
76
15
57
53
0
2
44
1.12
40462842--40463001
21
7.8
19
71
21
94
62
0
3
33
1.18
40462846--40462985
20
7.1
20
69
23
66
62
0
4
32
1.19
40462890--40463006
24
5.0
23
71
16
82
61
0
2
35
1.10
40462890--40462980
37
2.8
32
78
17
89
61
0
3
35
1.12
40472073--40472134
20
3.1
19
79
11
61
25
6
9
58
1.54
40475368--40475416
24
2.0
24
84
8
62
30
4
0
65
1.11
40475366--40475407
18
2.4
17
84
4
57
30
4
0
64
1.14
40483679--40483831
43
3.5
45
80
7
156
28
15
24
31
1.96
40488051--40488172
42
2.9
42
81
4
147
28
17
25
28
1.97
40488915--40489007
47
2.0
46
93
2
159
30
11
23
34
1.91
40515934--40515985
18
2.7
20
88
11
74
21
23
0
55
1.43
40516181--40516282
37
2.7
37
87
1
150
34
25
16
23
1.95
40518795--40518853
29
2.0
29
96
0
109
38
18
13
28
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40518777--40519193
207
2.0
207
98
0
798
42
13
14
29
1.84
40521524--40521742
40
5.5
40
79
6
212
46
26
14
12
1.80
40521536--40521745
80
2.6
80
80
5
253
45
26
15
12
1.81
40523497--40523566
27
2.6
27
93
2
113
30
25
14
30
1.95
40526397--40526483
21
4.0
23
80
10
92
37
25
21
14
1.92
40534255--40534341
21
4.0
23
80
10
92
37
25
21
14
1.92
40538320--40538447
43
3.0
43
84
2
159
29
19
21
28
1.98
40538843--40538890
21
2.3
21
78
7
53
4
47
14
33
1.63
40544475--40544533
9
6.6
9
82
0
73
28
3
23
44
1.70
40544476--40544533
27
2.1
27
90
0
89
29
3
22
44
1.69
40544991--40545057
33
2.0
33
94
0
116
44
16
23
14
1.85
40547017--40547081
25
2.6
25
87
0
94
27
16
43
12
1.84
40549262--40549345
40
2.1
40
90
0
132
17
21
17
42
1.89
40549344--40549400
22
2.7
20
77
22
62
33
1
1
63
1.15
40549807--40549867
7
8.6
7
83
3
68
50
26
0
22
1.49
40549811--40549862
22
2.4
22
90
3
79
48
30
0
21
1.51
40550760--40551032
41
6.8
41
85
6
371
20
25
20
33
1.97
40560737--40560784
24
2.0
25
83
4
62
62
4
12
20
1.46
40567917--40567978
20
3.1
20
86
4
81
32
3
0
64
1.09
40567932--40567972
11
3.9
11
75
12
50
34
4
0
60
1.18
40567917--40568083
10
17.6
9
66
17
63
35
3
1
59
1.23
40567943--40568075
47
2.8
48
73
14
125
37
3
1
57
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40567907--40568090
19
9.8
19
69
20
70
34
3
1
60
1.23
40573255--40573317
26
2.4
25
84
5
81
42
6
19
31
1.76
40574798--40574827
15
2.0
15
100
0
60
20
40
0
40
1.52
40575623--40575666
3
14.7
3
100
0
88
65
0
0
34
0.93
40578078--40578106
5
5.8
5
100
0
58
37
0
0
62
0.96
40580138--40580309
94
1.8
94
81
2
211
32
15
25
26
1.96
40586867--40586996
40
3.2
40
81
4
156
23
27
24
23
2.00
40597977--40598084
26
4.2
26
96
0
198
36
25
7
31
1.83
40598720--40598760
11
3.7
11
80
0
55
19
14
9
56
1.66
40598797--40598858
30
2.1
29
91
8
99
29
3
9
58
1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335