Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  155  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45466097--45466277
100
1.8
100
92
2
310
24
19
25
29
1.99
45469762--45469805
20
2.2
20
91
0
70
61
11
20
6
1.52
45486810--45486853
22
2.0
22
100
0
88
50
9
27
13
1.72
45493181--45493225
23
2.0
23
82
8
56
37
8
13
40
1.76
45497748--45497823
31
2.5
32
79
14
81
32
9
17
40
1.81
45499512--45499536
2
12.5
2
100
0
50
52
0
0
48
1.00
45502544--45502601
26
2.2
26
93
0
98
34
5
24
36
1.78
45504217--45504331
27
4.3
26
83
7
131
16
21
23
38
1.93
45504217--45504331
54
2.1
54
85
3
151
16
21
23
38
1.93
45504393--45504432
19
2.0
22
85
14
59
17
2
47
32
1.61
45506007--45506037
14
2.1
15
94
5
55
83
0
16
0
0.64
45506004--45506039
18
2.0
18
88
0
54
83
0
16
0
0.65
45518584--45518609
2
13.0
2
100
0
52
50
0
0
50
1.00
45520712--45521072
47
7.7
45
72
15
193
27
20
29
22
1.99
45520707--45521072
94
3.9
94
79
8
381
26
21
29
22
1.99
45520713--45521072
141
2.6
140
77
11
351
26
20
29
22
1.99
45529505--45529535
6
5.2
6
92
0
53
48
16
19
16
1.81
45530654--45530723
5
14.0
5
84
11
90
60
0
2
37
1.12
45530654--45530719
26
2.7
24
90
4
96
60
0
3
36
1.12
45530663--45530723
31
1.9
32
93
3
106
60
0
3
36
1.13
45537113--45537329
43
5.0
43
87
4
294
25
15
29
29
1.96
45546437--45546557
27
4.5
27
75
8
93
31
18
31
19
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45548150--45548195
20
2.3
20
84
0
56
56
4
2
36
1.31
45548642--45548702
18
3.5
17
79
16
63
40
0
1
57
1.08
45549616--45549697
20
4.3
19
72
14
62
58
4
2
34
1.32
45549606--45549697
39
2.4
37
80
8
112
58
4
2
34
1.30
45551106--45551150
13
3.5
13
81
0
54
24
0
6
68
1.13
45554783--45555036
116
2.2
116
91
0
411
27
18
19
34
1.95
45554866--45555312
156
2.9
155
82
6
546
28
19
19
32
1.96
45555526--45555556
15
2.1
15
93
0
53
19
0
38
41
1.51
45558252--45558306
14
3.9
14
87
2
65
21
0
30
47
1.51
45558403--45558435
7
4.7
7
100
0
66
15
0
39
45
1.46
45559064--45559118
22
2.5
22
87
3
74
25
1
49
23
1.60
45559081--45559132
22
2.4
22
90
3
79
23
1
53
21
1.55
45559045--45559134
7
12.7
7
73
5
65
22
1
48
27
1.57
45559175--45559214
21
1.9
21
84
0
53
20
0
35
45
1.51
45559175--45559236
28
2.2
29
88
8
92
19
0
35
45
1.51
45559191--45559281
36
2.5
35
79
11
96
24
0
35
40
1.55
45559191--45559322
7
18.6
7
70
14
65
25
0
35
39
1.56
45564562--45564595
15
2.3
15
94
0
59
14
11
20
52
1.73
45569133--45569407
136
2.0
137
96
0
507
31
24
19
25
1.98
45571187--45571296
26
4.2
26
92
0
175
37
23
5
33
1.78
45572219--45572253
7
5.0
7
96
0
52
37
34
0
28
1.58
45572220--45572302
14
5.9
14
71
10
62
28
30
1
39
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45572473--45572534
7
8.9
7
84
7
81
32
35
0
32
1.58
45572530--45572563
7
4.9
7
100
0
68
29
14
0
55
1.40
45572490--45572562
14
5.2
14
88
0
65
31
27
0
41
1.56
45572502--45572562
21
2.9
21
85
0
68
29
27
0
42
1.56
45572586--45572623
20
1.9
20
84
10
51
23
13
0
63
1.30
45574575--45574747
93
1.9
93
91
0
283
28
30
20
21
1.98
45574567--45574743
46
3.8
46
77
12
182
29
29
19
21
1.98
45582889--45583060
93
1.8
93
92
0
290
27
29
22
20
1.99
45582881--45583056
46
3.8
46
78
12
198
28
28
21
21
1.98
45588821--45588858
14
2.9
13
81
11
51
57
10
13
18
1.63
45595629--45595664
11
3.3
11
92
0
54
22
30
0
47
1.52
45595630--45595665
17
2.1
17
90
10
56
19
30
0
50
1.48
45598596--45598639
3
14.7
3
95
0
79
65
0
2
31
1.05
45599117--45599150
17
2.1
17
94
5
61
32
0
5
61
1.20
45599770--45599819
18
2.8
18
85
11
59
64
0
2
34
1.05
45599772--45599814
19
2.2
20
80
19
56
67
0
2
30
1.03
45599789--45599890
38
2.7
38
74
10
102
59
2
4
32
1.33
45601883--45601921
20
2.0
20
84
0
51
25
2
25
46
1.66
45610178--45610220
17
2.5
17
100
0
86
13
41
25
18
1.88
45610823--45610916
8
11.6
8
76
13
61
54
1
2
42
1.19
45610851--45610911
5
13.0
5
86
13
94
57
0
0
42
0.98
45616004--45616038
18
1.9
18
94
0
61
40
17
25
17
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45621372--45621396
12
2.1
12
100
0
50
32
28
32
8
1.86
45631349--45631390
2
21.0
2
100
0
84
50
0
0
50
1.00
45633758--45633792
2
17.5
2
100
0
70
51
0
0
48
1.00
45637873--45637983
56
2.0
56
85
7
154
23
18
26
32
1.97
45641076--45641255
46
3.9
46
80
10
224
21
21
30
27
1.98
45644200--45644268
15
4.6
15
83
0
84
11
17
13
57
1.64
45644191--45644278
30
3.0
30
81
8
99
10
17
15
56
1.66
45646644--45646824
46
3.9
46
81
9
233
20
21
29
27
1.98
45646646--45646816
93
1.8
93
96
0
315
20
22
29
27
1.98
45652191--45652430
48
5.0
48
93
0
408
35
6
27
31
1.83
45652483--45652616
37
3.6
37
91
2
216
26
20
31
21
1.98
45653888--45654159
40
6.8
40
94
0
436
25
20
27
25
1.99
45662665--45662958
143
2.1
140
97
1
552
21
10
29
38
1.87
45663599--45663732
29
4.6
29
87
0
169
29
14
31
24
1.95
45665675--45665700
13
2.0
13
100
0
52
30
0
0
69
0.89
45670228--45670277
26
1.9
26
91
0
82
24
26
12
38
1.90
45670257--45670339
29
2.9
29
96
0
148
25
31
14
28
1.95
45670983--45671276
143
2.1
141
97
1
554
39
29
10
21
1.86
45678164--45678298
29
4.7
29
85
3
146
23
31
15
29
1.95
45678217--45678299
29
2.9
29
96
0
148
25
31
14
28
1.95
45678943--45679237
143
2.1
141
98
1
563
38
29
10
21
1.87
45682909--45682934
7
3.7
7
100
0
52
0
23
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45683488--45683683
61
3.2
61
83
4
243
26
26
25
22
2.00
45684783--45684861
39
2.0
39
97
0
149
39
6
10
44
1.64
45692144--45692252
27
4.0
26
83
5
119
37
22
23
15
1.93
45692144--45692252
54
2.0
54
87
3
157
37
22
23
15
1.93
45693482--45693543
25
2.5
25
94
2
108
16
40
3
40
1.64
45693482--45693550
25
2.8
25
91
2
95
14
43
2
39
1.60
45705062--45705234
43
4.0
43
87
5
228
28
26
19
26
1.98
45705741--45705793
29
1.9
27
85
11
72
26
18
5
49
1.70
45708276--45708340
29
2.4
28
84
7
80
38
7
27
26
1.83
45708325--45708381
29
2.0
29
89
0
87
40
8
28
22
1.84
45708328--45708394
29
2.3
29
84
2
80
43
10
25
20
1.84
45708380--45708458
30
2.5
31
76
13
81
35
15
25
24
1.94
45722681--45722847
40
4.2
40
79
2
158
23
27
22
26
2.00
45730323--45730479
44
3.7
42
77
12
151
25
18
24
31
1.98
45730323--45730479
43
3.7
42
80
5
138
25
18
24
31
1.98
45730662--45730694
17
1.9
17
100
0
66
48
18
0
33
1.48
45732217--45732337
47
2.6
45
82
13
147
29
17
29
23
1.97
45732217--45732371
46
3.3
46
81
7
179
30
18
28
22
1.97
45737727--45737774
25
1.9
25
86
0
69
33
25
16
25
1.96
45737818--45737874
20
2.8
20
97
0
105
35
12
19
33
1.89
45737822--45737874
11
5.2
11
69
17
51
35
13
18
32
1.90
45737935--45737960
11
2.4
11
100
0
52
19
30
15
34
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45737946--45738077
45
2.8
46
85
10
162
28
22
20
28
1.99
45737946--45738077
24
5.6
24
84
9
166
28
22
20
28
1.99
45744500--45744547
25
1.9
25
91
0
78
35
25
14
25
1.94
45744591--45744674
20
4.2
20
95
0
141
33
11
22
32
1.91
45744615--45744669
11
5.4
11
70
16
55
36
12
20
30
1.90
45744721--45744887
23
7.1
23
93
2
262
28
22
21
27
1.99
45744720--45744909
24
8.0
23
90
4
265
28
22
22
26
1.99
45744721--45744908
47
4.0
46
88
6
270
27
22
22
27
1.99
45745100--45745163
31
2.1
31
96
0
119
39
15
21
23
1.92
45749927--45750093
42
4.0
43
79
6
146
30
24
13
31
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335