genome.fa.s5.2.7.7.80.10.50.1000.228.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  228  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68845747--68845785	20	2.0	20	85	10	53	43	2	0	53	1.14
68846571--68846607	15	2.4	15	95	4	65	40	8	0	51	1.32
68848421--68848541	39	3.1	39	95	0	215	20	25	31	22	1.98
68849054--68849225	39	4.1	39	79	16	200	20	22	31	25	1.98
68849091--68849192	51	2.0	51	96	0	186	21	19	31	27	1.97
68849054--68849225	90	1.9	90	95	0	308	20	22	31	25	1.98
68855811--68855972	39	4.1	39	80	12	204	22	23	30	24	1.99
68861805--68861848	22	1.9	24	86	9	65	40	13	2	43	1.57
68866140--68866199	6	9.8	6	94	1	102	16	30	0	53	1.44
68867218--68867273	27	2.1	27	89	0	85	41	14	12	32	1.83
68869249--68869296	24	2.0	24	100	0	96	50	8	4	37	1.52
68871415--68871565	40	3.8	39	80	6	153	27	23	27	22	1.99
68871452--68871581	40	3.3	39	80	4	161	24	23	27	24	2.00
68873104--68873194	48	1.9	47	90	2	146	39	28	12	19	1.88
68880460--68880493	17	2.1	16	88	5	50	26	2	44	26	1.69
68886553--68886582	12	2.5	12	88	0	51	30	0	50	20	1.49
68887789--68887825	17	2.1	19	85	10	51	10	27	43	18	1.83
68891551--68891652	29	3.5	29	90	0	150	23	33	15	27	1.95
68894108--68894332	12	17.7	12	66	24	67	61	1	5	31	1.26
68894105--68894182	9	8.2	9	71	24	54	61	2	1	34	1.18
68894100--68894332	16	13.9	16	66	20	70	62	1	5	31	1.25
68894085--68894374	25	11.8	24	65	20	70	62	2	4	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68894099--68894350	30	8.6	29	69	23	122	62	1	4	30	1.25
68894198--68894356	19	8.2	19	67	25	77	63	1	4	30	1.22
68894247--68894350	46	2.2	49	81	8	126	66	0	2	29	1.13
68896318--68896461	44	3.3	44	87	0	191	31	25	15	28	1.95
68896069--68896647	308	1.9	308	85	2	815	29	22	16	31	1.96
68902559--68902650	28	3.4	28	71	21	97	39	6	15	39	1.73
68902574--68902657	22	3.5	22	66	20	60	40	4	14	40	1.67
68902537--68902672	51	2.7	51	95	0	236	38	5	13	41	1.68
68905475--68905566	28	3.4	28	71	21	97	39	6	15	39	1.73
68905490--68905573	22	3.5	22	66	20	60	40	4	14	40	1.67
68905453--68905585	51	2.6	51	95	0	230	39	6	12	42	1.68
68911380--68911666	14	22.0	12	65	25	81	62	2	5	30	1.29
68911377--68911455	9	8.2	9	73	17	61	62	1	1	35	1.12
68911356--68911455	14	7.4	14	75	17	63	61	2	1	36	1.14
68911481--68911514	17	2.0	17	88	0	50	61	2	2	32	1.26
68911493--68911527	12	2.8	12	91	4	52	57	0	8	34	1.29
68911521--68911601	27	2.8	28	78	12	85	65	0	4	29	1.13
68911519--68911579	19	3.3	19	76	13	65	65	0	4	29	1.13
68911519--68911651	43	3.0	45	79	8	119	63	2	4	29	1.26
68911523--68911651	29	4.5	26	71	18	53	63	2	4	29	1.27
68911536--68911604	30	2.4	29	81	15	81	65	0	4	30	1.12
68913298--68913382	44	1.9	44	87	0	125	31	28	11	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68913564--68913690	44	2.9	44	89	0	164	31	25	11	30	1.92
68913298--68913876	308	1.9	308	87	0	854	28	24	16	31	1.96
68918337--68918386	25	2.0	25	96	0	91	54	2	16	28	1.53
68920679--68920712	18	1.9	17	88	5	50	52	11	11	23	1.70
68920700--68920877	30	5.9	29	83	7	187	48	14	16	20	1.80
68920780--68920852	25	2.7	26	87	10	94	46	12	19	21	1.82
68920750--68920877	61	2.2	56	90	8	195	46	13	17	21	1.82
68920700--68920858	6	26.3	6	73	13	121	49	13	15	20	1.79
68920994--68921059	27	2.5	26	85	7	87	37	22	22	16	1.93
68920994--68921067	27	2.8	27	78	13	82	36	21	24	17	1.95
68921018--68921075	27	2.1	27	84	6	73	36	27	20	15	1.93
68921232--68921290	22	2.7	22	81	0	64	32	22	25	20	1.98
68921378--68921459	27	3.1	26	82	6	85	36	21	21	19	1.95
68921658--68921853	27	7.3	27	85	0	239	25	19	19	35	1.96
68921858--68922130	27	10.1	27	85	3	352	40	9	21	27	1.84
68928559--68928853	12	23.9	12	65	26	88	62	1	5	31	1.27
68928556--68928634	9	8.2	9	71	17	52	60	1	2	35	1.18
68928551--68928854	17	18.2	16	66	20	67	62	1	4	31	1.26
68928535--68928636	40	2.5	42	80	13	115	60	1	1	35	1.19
68928698--68928845	19	7.7	19	71	15	83	64	2	3	29	1.20
68928698--68928778	21	3.5	24	74	24	61	64	0	4	30	1.15
68928698--68928814	55	2.2	50	82	11	137	64	1	3	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68928737--68928801	32	2.0	32	85	11	87	66	1	1	30	1.10
68928718--68928848	52	2.3	54	81	13	131	64	2	3	30	1.21
68929133--68929175	23	1.9	23	86	13	63	69	0	4	25	1.07
68940354--68940574	40	5.6	40	90	1	338	23	20	30	25	1.99
68942758--68942981	83	2.8	80	85	9	321	26	27	22	23	1.99
68942758--68942981	40	5.6	40	84	9	269	26	27	22	23	1.99
68947286--68947574	56	5.2	56	89	2	413	33	22	14	29	1.93
68947533--68947717	43	4.3	43	85	2	228	30	24	16	28	1.96
68952260--68952422	39	4.2	39	93	0	263	23	20	31	24	1.98
68952273--68952451	78	2.3	78	88	2	243	24	21	31	22	1.98
68960230--68960392	39	4.2	39	93	0	263	23	20	31	24	1.98
68960243--68960421	78	2.3	78	88	2	243	24	21	31	22	1.98
68964167--68964329	39	4.2	39	93	0	263	23	20	31	24	1.98
68964180--68964358	78	2.3	78	88	2	243	24	21	31	22	1.98
68972135--68972296	39	4.2	39	91	2	254	23	19	32	24	1.98
68972146--68972296	77	1.9	79	93	2	261	23	20	31	23	1.98
68972148--68972325	77	2.3	78	86	4	234	24	21	31	23	1.98
68975917--68975987	34	2.1	34	97	0	133	33	2	30	32	1.72
68982435--68982618	39	4.7	39	85	3	239	28	28	22	20	1.99
68988141--68988292	39	4.1	39	82	11	210	27	22	23	26	1.99
68988185--68988250	32	2.1	32	94	0	114	25	25	25	22	2.00
68988146--68988289	71	2.0	71	93	0	243	27	23	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68989891--68990042	40	3.8	40	84	5	166	25	26	23	25	2.00
68997913--68998065	40	3.8	40	79	5	148	25	28	23	22	2.00
69002455--69002500	17	2.5	19	74	22	53	34	23	17	23	1.96
69004966--69005085	39	3.1	39	93	0	204	26	20	24	28	1.99
69013670--69013829	42	3.8	42	80	4	162	30	16	24	29	1.96
69016304--69016517	40	5.4	40	94	1	360	25	28	22	23	2.00
69027313--69027357	20	2.2	20	80	7	56	20	17	4	57	1.56
69032799--69032902	40	2.6	40	89	0	154	21	27	23	27	1.99
69035688--69035770	28	3.0	27	89	3	103	45	27	4	21	1.72
69035811--69035840	13	2.2	14	94	5	53	43	33	0	23	1.54
69036294--69036373	36	2.2	36	95	0	142	37	20	0	42	1.52
69052754--69052799	19	2.5	19	86	6	60	47	0	8	43	1.34
69053688--69053717	16	1.9	16	93	6	53	3	16	0	80	0.85
69053739--69053803	15	4.7	15	70	18	68	3	30	0	66	1.07
69053698--69053804	57	2.0	54	83	12	139	4	30	0	64	1.14
69059756--69059788	12	2.8	12	86	4	50	72	6	0	21	1.05
69069218--69069262	22	2.0	24	86	8	67	42	8	0	48	1.34
69069381--69069417	18	2.1	18	89	0	56	54	8	5	32	1.53
69070224--69070542	158	2.0	158	98	0	620	38	15	19	26	1.92
69078640--69078687	20	2.3	20	79	10	53	39	6	10	43	1.64
69078780--69078823	22	1.9	24	86	9	65	43	9	0	47	1.35
69081682--69081816	58	2.3	58	83	5	157	51	12	10	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69081835--69082011	77	2.3	78	85	4	225	49	7	6	35	1.58
69081987--69082035	24	2.0	24	100	0	98	40	14	4	40	1.64
69083420--69083977	138	4.1	138	90	1	897	41	8	5	45	1.56
69083414--69083977	274	2.1	275	93	1	952	41	7	5	45	1.57
69086735--69086837	29	3.6	27	81	5	98	29	33	16	21	1.95
69094764--69094839	29	2.6	29	83	4	91	28	31	17	22	1.96
69094827--69094875	25	2.0	25	100	0	98	32	24	12	30	1.92
69099536--69099574	18	2.2	18	90	0	60	7	23	30	38	1.83
69101629--69102497	289	3.0	288	97	0	1639	41	16	13	28	1.86
69104139--69104210	27	2.7	27	78	4	83	38	19	20	20	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335