genome.fa.s5.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  104  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32664761--32664846	30	2.9	30	98	0	163	29	0	12	58	1.35
32667475--32667513	20	2.0	20	89	0	60	61	10	2	25	1.41
32668122--32668165	21	2.2	20	87	4	61	70	6	2	20	1.21
32669388--32669441	18	3.3	18	66	28	57	22	48	7	22	1.75
32669378--32669445	30	2.3	30	89	5	111	25	50	5	19	1.70
32670011--32670081	2	36.5	2	73	16	51	39	4	1	54	1.28
32670099--32670161	25	2.5	24	84	7	72	30	4	6	58	1.43
32670104--32670175	25	2.8	25	77	10	67	30	5	4	59	1.39
32670222--32670277	25	2.3	24	79	14	62	37	16	3	42	1.65
32672505--32672566	31	2.0	31	96	0	115	17	29	30	22	1.97
32673168--32673338	84	2.0	84	100	0	342	29	17	10	42	1.83
32677278--32677372	30	3.1	30	73	11	86	41	11	1	46	1.47
32677991--32678015	2	12.5	2	100	0	50	52	0	0	48	1.00
32678431--32678478	3	16.3	3	91	4	80	33	2	0	64	1.05
32678497--32678527	2	15.5	2	100	0	62	48	0	0	51	1.00
32683323--32683369	22	2.2	21	85	14	62	46	8	17	27	1.76
32683353--32683398	11	4.4	11	81	8	51	45	0	26	28	1.54
32684199--32684238	22	1.9	22	85	10	57	52	2	2	42	1.28
32684286--32684352	34	1.9	35	85	8	93	32	7	0	59	1.25
32685527--32685613	13	6.7	13	77	0	75	35	24	6	33	1.82
32685527--32685613	26	3.3	26	72	0	84	35	24	6	33	1.82
32695444--32695507	33	2.0	33	84	3	85	45	0	6	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32701899--32701936	2	19.5	2	94	5	69	50	0	0	50	1.00
32703465--32703508	22	2.0	22	81	0	52	34	9	11	45	1.72
32703487--32703531	18	2.5	18	81	0	54	31	17	17	33	1.94
32704330--32704394	22	3.0	21	77	4	58	6	13	6	73	1.21
32705911--32705940	2	15.0	2	100	0	60	50	0	0	50	1.00
32724712--32724857	73	2.0	73	100	0	292	31	12	12	43	1.79
32724725--32724875	73	2.0	72	89	6	212	32	14	11	41	1.81
32727382--32727441	3	20.0	3	100	0	120	66	0	0	33	0.92
32730060--32730115	15	3.7	15	74	9	60	41	28	5	25	1.77
32730260--32730298	16	2.4	17	83	12	55	64	15	0	20	1.30
32731554--32731583	11	2.6	12	89	10	53	76	0	23	0	0.78
32731834--32731866	2	16.5	2	100	0	66	51	0	0	48	1.00
32739947--32739978	2	16.0	2	100	0	64	50	0	0	50	1.00
32741139--32741190	25	2.1	25	100	0	104	36	3	26	32	1.75
32741164--32741403	50	4.9	48	96	2	426	34	5	27	32	1.80
32741164--32741403	98	2.5	97	94	4	428	34	5	27	32	1.80
32741383--32741422	19	2.1	19	100	0	80	37	0	27	35	1.57
32741164--32741446	98	2.9	96	82	13	292	34	5	27	32	1.80
32741578--32741680	37	2.8	37	93	0	179	24	20	31	24	1.98
32743156--32743209	23	2.5	23	82	8	60	61	7	0	31	1.24
32743377--32743443	21	3.0	23	76	21	72	64	0	5	29	1.17
32743410--32743455	15	2.9	15	90	6	65	67	0	6	26	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32743425--32743526	14	7.2	13	72	25	59	64	1	7	25	1.31
32743420--32743541	29	4.2	30	69	16	76	63	1	7	27	1.30
32743474--32743538	23	2.8	23	70	23	55	64	3	6	26	1.32
32747091--32747200	54	2.0	54	100	0	220	21	27	15	35	1.94
32751107--32751146	18	2.0	20	86	13	57	30	0	5	65	1.14
32751918--32751958	19	2.3	18	84	16	50	21	4	2	70	1.18
32751947--32751982	17	2.2	17	90	5	56	16	0	8	75	1.04
32751945--32751983	16	2.4	16	83	8	53	23	0	7	69	1.14
32752719--32752789	19	3.5	19	71	14	61	43	5	9	40	1.61
32752728--32752799	22	3.4	22	72	14	78	44	6	9	38	1.64
32752720--32752806	42	2.0	43	95	2	158	45	6	8	39	1.60
32758018--32758069	26	2.0	26	84	0	68	30	13	28	26	1.94
32762457--32762521	11	5.9	12	74	15	52	58	0	0	41	0.98
32766736--32766768	14	2.3	15	89	5	50	27	0	0	72	0.85
32773241--32773304	28	2.3	29	78	10	71	28	6	7	57	1.51
32774944--32774979	17	2.1	17	89	0	54	19	2	30	47	1.64
32779104--32779268	12	13.8	12	68	12	72	20	10	15	53	1.71
32779110--32779168	18	3.3	19	77	17	54	15	13	13	57	1.65
32779186--32779268	6	14.0	6	79	2	69	18	7	18	56	1.63
32779187--32779268	18	4.6	18	73	3	76	18	7	18	56	1.64
32779265--32779306	16	2.6	16	96	0	75	23	7	16	52	1.68
32779351--32779401	25	2.0	25	92	0	84	17	9	23	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32779764--32779793	15	2.0	15	93	0	51	23	6	30	40	1.80
32780736--32781493	377	2.0	377	95	1	1367	34	16	18	31	1.93
32782611--32782656	21	2.2	21	84	0	56	34	36	17	10	1.85
32783377--32783452	36	2.1	36	82	4	91	50	25	9	15	1.74
32786651--32786701	10	5.0	10	79	9	50	1	19	19	58	1.48
32806779--32806805	14	1.9	14	100	0	54	81	0	18	0	0.69
32808523--32808888	178	2.1	179	89	0	554	31	16	21	30	1.95
32808892--32809689	88	9.1	88	91	0	1222	33	21	23	21	1.97
32808941--32809696	44	17.2	43	64	13	290	32	21	23	21	1.98
32810697--32811076	190	2.0	190	100	0	760	20	20	17	42	1.90
32812908--32812938	2	15.5	2	100	0	62	51	0	0	48	1.00
32813065--32813137	36	2.0	36	100	0	146	28	16	16	38	1.90
32818431--32818466	10	3.8	9	86	13	54	77	0	2	19	0.88
32822442--32822469	2	14.0	2	100	0	56	50	0	0	50	1.00
32823447--32823514	11	6.3	11	67	8	50	61	4	0	33	1.16
32825030--32825078	2	25.0	2	95	4	91	51	0	0	48	1.00
32826949--32826990	17	2.3	18	88	12	68	52	4	28	14	1.62
32826956--32826990	17	2.1	17	100	0	70	48	5	28	17	1.69
32827257--32827536	46	6.0	46	88	4	398	40	13	23	22	1.89
32827257--32827584	92	3.4	96	86	5	443	41	13	23	21	1.89
32827271--32827589	46	6.7	46	86	5	370	41	14	22	21	1.89
32829321--32829450	51	2.6	50	86	6	174	16	10	40	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32832668--32832758	45	2.0	45	100	0	182	56	6	15	21	1.62
32833872--32833920	12	4.3	11	78	17	55	71	2	2	24	1.07
32833872--32833925	27	2.0	26	82	10	65	70	1	1	25	1.07
32835490--32835518	15	1.9	15	100	0	58	31	0	0	68	0.89
32835908--32836344	44	9.9	44	72	9	280	30	18	16	34	1.93
32835908--32836175	133	2.0	133	84	2	351	30	18	16	34	1.93
32835915--32836301	89	4.4	90	76	7	310	29	18	17	34	1.94
32845824--32845868	19	2.3	20	84	3	56	46	6	20	26	1.75
32849599--32849647	12	4.3	11	78	17	55	71	2	2	24	1.07
32849599--32849652	27	2.0	26	82	10	65	70	1	1	25	1.07
32853246--32853304	26	2.2	26	82	11	66	30	1	5	62	1.26
32854166--32854193	14	2.0	14	100	0	56	50	0	7	42	1.30
32855337--32855396	31	2.0	30	90	3	93	38	0	0	61	0.96
32855368--32855413	20	2.3	20	89	10	76	36	0	0	63	0.95
32855329--32855402	31	2.4	32	80	11	91	37	0	0	62	0.96
32855456--32855635	29	6.1	28	66	22	77	37	0	3	58	1.21
32855470--32855518	16	3.2	16	72	19	50	36	0	2	61	1.08
32855500--32855574	10	7.8	9	71	16	53	36	0	2	61	1.10
32855467--32855574	37	2.8	37	72	15	103	37	0	2	60	1.12
32855564--32855602	16	2.4	15	84	16	51	41	0	5	53	1.23
32855618--32855706	31	2.9	29	83	9	99	42	0	1	56	1.06
32855684--32855759	33	2.3	33	76	13	84	43	1	2	52	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32858733--32858930	48	4.1	48	90	0	288	12	9	41	36	1.74
32858730--32858930	96	2.1	96	89	0	321	11	8	42	36	1.73
32858860--32859070	84	2.5	84	87	0	296	9	12	42	35	1.76
32859548--32859605	28	2.2	27	79	17	68	43	3	5	48	1.42
32865568--32865677	26	4.2	26	92	0	175	33	5	23	37	1.78
32867453--32867858	131	3.1	132	90	6	650	24	17	24	33	1.96
32868451--32868552	55	1.9	52	92	6	168	25	8	18	47	1.78
32871634--32871741	26	4.2	25	91	4	171	34	5	23	37	1.78
32873516--32873938	137	3.1	137	97	0	794	24	18	24	31	1.98
32875015--32875125	38	3.0	37	74	18	106	38	1	1	57	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335