Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  167  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49345410--49345440
10
3.0
10
95
4
53
29
0
0
70
0.87
49348757--49348853
48
2.0
48
100
0
194
36
26
10
26
1.89
49349748--49349834
45
1.9
45
90
0
138
25
13
24
36
1.92
49352411--49352600
40
4.7
39
80
11
190
25
29
21
23
1.99
49352399--49352606
79
2.6
80
81
8
244
26
28
21
24
1.99
49359585--49359790
40
5.2
40
81
9
244
26
28
21
23
1.99
49359585--49359787
77
2.6
81
81
10
240
26
29
21
23
1.99
49361823--49361893
27
2.6
27
86
0
97
28
25
12
33
1.92
49366157--49366254
31
3.1
30
68
25
85
17
2
33
46
1.59
49367283--49367398
58
2.0
58
100
0
232
32
12
13
41
1.82
49368904--49368933
2
15.0
2
100
0
60
50
0
0
50
1.00
49368946--49369006
30
2.0
30
100
0
122
45
6
19
27
1.75
49369612--49369650
20
1.9
21
84
5
53
35
7
0
56
1.28
49371743--49371814
35
2.1
35
97
0
135
19
13
18
48
1.81
49379220--49379421
101
2.0
101
100
0
404
34
27
13
23
1.93
49386333--49386470
40
3.5
40
81
6
131
23
27
24
24
2.00
49386358--49386519
40
4.1
37
76
9
117
24
27
22
25
2.00
49388893--49388938
22
2.1
22
95
0
83
28
17
2
52
1.56
49392711--49393074
46
8.0
47
86
6
428
21
24
15
39
1.92
49392711--49393074
92
4.0
92
87
2
491
21
24
15
39
1.92
49392907--49392976
21
3.2
21
64
28
56
21
25
15
37
1.93
49392711--49393074
136
2.7
137
85
1
453
21
24
15
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49392849--49393105
136
1.9
133
83
7
329
23
26
15
33
1.95
49395212--49395249
11
3.5
11
82
13
51
65
2
0
31
1.06
49409956--49409994
20
2.0
20
85
10
53
30
15
7
46
1.74
49415194--49415248
28
1.9
29
89
10
87
72
7
1
18
1.16
49415262--49415310
19
2.6
18
87
9
62
55
4
0
40
1.19
49422624--49422665
15
2.7
15
85
3
57
26
0
73
0
0.83
49424616--49424648
5
6.6
5
92
0
57
0
21
0
78
0.75
49425222--49425262
20
2.0
21
90
4
66
17
9
0
73
1.09
49425826--49425878
26
2.0
26
85
0
70
45
1
3
49
1.31
49426824--49426884
10
5.9
10
75
7
50
62
0
1
36
1.05
49426824--49426881
20
2.9
20
81
0
71
62
0
1
36
1.06
49430134--49430315
41
4.5
41
77
9
183
21
21
30
26
1.99
49433398--49433445
25
1.9
24
84
16
62
43
18
4
33
1.69
49433633--49433756
22
5.5
23
72
14
89
37
19
25
17
1.94
49433633--49433768
23
6.0
23
71
14
95
36
20
25
17
1.95
49441048--49441095
25
1.9
24
84
16
62
43
18
4
33
1.69
49441351--49441409
22
2.6
22
86
2
82
35
15
30
18
1.92
49443369--49443485
43
2.7
43
85
6
148
29
13
22
34
1.92
49443383--49443513
43
3.0
43
83
4
158
28
13
24
33
1.93
49446652--49446889
49
5.1
49
85
11
320
28
8
33
29
1.87
49446743--49446820
37
2.1
37
97
0
147
25
10
33
30
1.89
49446694--49446939
86
2.9
85
90
5
356
28
8
32
30
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49446866--49446925
18
3.3
18
69
17
61
30
3
31
35
1.74
49446854--49446925
36
2.0
36
100
0
144
27
5
33
33
1.80
49447041--49447125
37
2.3
37
95
0
152
24
20
34
21
1.97
49448939--49449023
40
2.1
40
84
0
107
27
21
28
23
1.99
49449221--49449383
29
5.7
29
97
1
301
26
15
33
24
1.95
49449220--49449383
57
2.9
57
97
0
301
26
15
32
25
1.96
49449221--49449383
86
1.9
87
97
1
310
26
15
33
24
1.95
49449867--49449965
41
2.4
41
80
11
114
26
24
24
25
2.00
49452684--49452921
49
5.1
49
87
10
345
28
8
32
29
1.87
49452763--49452894
39
3.1
39
74
25
142
27
9
33
30
1.88
49452886--49452956
35
2.0
35
100
0
142
25
5
35
33
1.79
49452727--49452971
84
2.8
87
90
5
349
27
8
32
31
1.87
49453073--49453157
37
2.3
37
95
0
152
24
20
34
21
1.97
49455071--49455099
12
2.5
12
94
5
51
27
48
24
0
1.51
49458110--49458221
56
2.0
56
100
0
224
23
7
21
48
1.74
49460625--49460723
28
3.5
28
81
9
112
29
25
16
29
1.96
49468306--49468404
28
3.5
28
81
9
112
29
25
16
29
1.96
49478247--49478506
140
1.9
139
82
8
330
23
28
20
28
1.98
49478844--49478901
30
1.9
30
92
0
98
25
25
15
32
1.95
49480398--49480424
13
2.1
13
100
0
54
22
40
7
29
1.81
49499384--49499426
19
2.3
19
81
14
54
44
0
23
32
1.54
49499852--49500170
46
6.7
47
75
10
253
27
18
30
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49521768--49521953
40
4.7
39
77
8
153
25
27
22
25
2.00
49524249--49524423
47
3.8
44
77
16
149
28
18
28
24
1.98
49524249--49524423
94
1.9
93
84
8
239
28
18
28
24
1.98
49529372--49529472
52
1.9
52
90
4
159
37
22
8
30
1.85
49533901--49533945
22
2.0
22
95
0
81
33
8
24
33
1.86
49534453--49534560
49
2.2
49
98
0
207
32
11
36
20
1.88
49537137--49537192
28
2.0
28
100
0
112
50
7
21
21
1.72
49540862--49540909
22
2.1
22
85
11
62
45
0
25
29
1.53
49541176--49541252
28
2.8
28
72
14
79
41
0
23
35
1.55
49541381--49541477
38
2.5
39
73
10
99
21
19
29
28
1.98
49542448--49542615
40
4.2
40
79
1
158
22
27
23
26
2.00
49542464--49542613
80
1.9
80
84
5
205
21
27
24
26
1.99
49549488--49549655
40
4.2
40
79
1
158
22
27
23
26
2.00
49549504--49549653
80
1.9
80
84
5
205
21
27
24
26
1.99
49553464--49553496
2
16.5
2
100
0
66
48
0
0
51
1.00
49553958--49554027
27
2.5
28
93
2
115
30
14
25
30
1.95
49560688--49560732
16
2.6
17
79
10
56
22
11
2
64
1.36
49560667--49560734
15
4.3
15
71
10
55
22
10
8
58
1.58
49563051--49563204
57
2.7
58
78
8
156
31
19
15
33
1.93
49566779--49566907
40
3.3
39
82
6
154
23
27
25
23
2.00
49574836--49574965
40
3.3
39
83
4
163
23
28
25
23
1.99
49579122--49579247
46
2.7
46
82
6
137
23
11
29
34
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49585711--49585840
40
3.3
39
84
4
172
23
24
28
23
2.00
49590791--49590836
17
2.7
17
100
0
92
19
43
28
8
1.80
49592668--49592744
30
2.6
30
71
8
75
31
14
16
37
1.89
49596150--49596298
80
1.9
80
81
2
183
22
30
24
22
1.99
49596191--49596298
40
2.7
38
85
8
128
21
29
25
23
1.99
49604270--49604418
80
1.9
80
81
2
183
22
30
24
22
1.99
49604311--49604418
40
2.7
38
85
8
128
21
29
25
23
1.99
49608958--49609047
31
3.1
31
84
14
136
24
22
16
36
1.94
49608961--49609044
26
3.0
26
89
8
114
26
23
17
32
1.97
49609239--49609403
24
7.0
24
90
6
239
26
22
22
28
1.99
49609454--49609513
20
3.0
20
95
0
111
33
20
10
36
1.86
49609454--49609508
11
5.4
11
70
16
55
30
20
10
38
1.87
49609556--49609603
25
1.9
25
86
0
69
25
16
25
33
1.96
49614666--49614841
46
3.8
46
79
12
216
21
20
28
29
1.98
49614663--49614833
93
1.8
93
94
0
306
21
21
29
28
1.98
49619642--49619758
30
3.5
35
88
10
126
22
23
17
37
1.94
49619665--49619758
31
3.1
31
96
1
172
23
21
15
39
1.92
49619950--49620091
24
6.0
24
90
5
200
26
22
21
28
1.99
49619949--49620091
70
2.0
72
87
5
211
26
22
21
29
1.99
49620142--49620201
20
3.0
20
95
0
111
33
20
10
36
1.86
49620142--49620196
11
5.4
11
70
16
55
30
20
10
38
1.87
49620244--49620291
25
1.9
25
86
0
69
25
16
25
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49622284--49622392
41
2.7
40
76
12
114
26
17
18
37
1.93
49633896--49634055
46
3.6
43
78
13
137
25
28
20
25
1.99
49633969--49634055
45
1.9
46
88
6
133
26
27
20
25
1.99
49639613--49639727
45
2.6
46
81
13
141
26
29
19
25
1.98
49645845--49646016
46
3.7
46
79
13
208
27
28
22
21
1.99
49645850--49646020
93
1.8
93
94
0
306
27
29
22
21
1.99
49658263--49658433
93
1.8
93
96
0
315
28
29
21
21
1.98
49658258--49658430
46
3.7
46
80
13
219
28
28
21
21
1.98
49665763--49665887
46
2.7
46
95
1
216
28
28
22
20
1.99
49666310--49666369
30
2.0
30
90
0
93
30
25
8
36
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335