genome.fa.s5.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  156  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45752536--45752652	39	3.1	38	90	5	182	27	22	23	26	2.00
45752536--45752648	37	3.0	37	90	3	172	27	22	23	26	1.99
45760646--45760769	39	3.2	39	92	0	203	26	23	24	25	2.00
45761138--45761185	2	24.0	2	100	0	96	50	0	0	50	1.00
45762908--45763025	52	2.3	52	78	15	131	43	3	0	52	1.23
45763115--45763157	8	5.5	8	77	5	52	69	0	0	30	0.88
45764815--45764853	19	2.1	19	90	9	62	48	0	7	43	1.31
45767102--45767165	13	4.9	13	79	7	67	29	7	26	35	1.85
45779390--45779440	17	3.0	17	82	5	59	33	21	19	25	1.97
45783818--45783911	49	1.9	49	82	0	116	26	4	31	37	1.76
45786855--45786921	25	2.7	25	79	4	73	23	23	19	32	1.97
45788656--45788692	2	18.5	2	100	0	74	48	0	0	51	1.00
45791644--45793094	573	2.5	573	99	0	2893	26	23	24	24	2.00
45801785--45801951	40	4.2	40	81	2	176	24	27	22	25	2.00
45801801--45801951	80	1.9	79	83	6	198	23	27	22	25	2.00
45807677--45807758	25	3.4	25	78	10	89	24	31	17	26	1.97
45813027--45813232	79	2.6	80	85	3	254	26	22	26	25	2.00
45813026--45813232	40	5.2	39	82	6	211	26	22	26	25	2.00
45821059--45821243	40	4.6	39	85	4	217	28	22	25	23	2.00
45821058--45821264	80	2.6	80	83	4	247	26	22	26	25	2.00
45821057--45821264	40	5.2	39	83	5	211	26	22	25	25	2.00
45823169--45823198	15	2.1	15	93	6	53	70	10	6	13	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45823404--45823481	27	3.2	24	71	22	63	58	3	5	32	1.38
45823705--45823817	50	2.3	46	77	16	113	51	3	12	32	1.57
45823810--45823886	13	5.9	13	83	8	95	61	2	1	35	1.18
45823829--45823887	11	4.9	11	75	22	57	59	1	1	37	1.18
45823944--45823989	23	2.0	23	83	8	58	56	4	2	36	1.31
45828383--45828837	87	5.2	87	87	3	524	34	21	23	19	1.96
45828383--45828837	174	2.6	174	85	2	585	34	21	23	19	1.96
45828592--45829140	131	4.2	131	77	4	439	35	22	23	17	1.95
45828589--45829054	218	2.1	217	93	0	797	35	22	24	17	1.95
45828807--45829231	87	4.9	87	87	1	550	35	22	23	18	1.96
45828807--45829230	173	2.4	172	88	1	589	35	22	23	18	1.96
45829567--45829601	11	3.3	11	96	4	63	51	34	8	5	1.56
45830992--45831067	38	2.1	36	85	9	100	28	1	2	67	1.12
45831020--45831102	14	6.2	13	68	19	55	30	3	1	65	1.17
45831013--45831069	14	4.1	14	78	21	59	28	0	3	68	1.06
45830963--45831067	36	2.7	39	75	12	110	28	1	4	64	1.24
45831401--45831505	26	4.2	26	73	15	69	30	4	4	60	1.38
45831397--45831504	48	2.2	49	79	11	123	31	4	4	59	1.38
45831575--45831653	26	3.0	25	72	26	65	32	10	2	54	1.47
45833698--45833981	110	2.6	110	82	0	307	26	15	25	33	1.95
45835280--45835486	39	5.3	39	91	0	306	21	26	19	31	1.98
45838853--45838878	3	8.7	3	100	0	52	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45840776--45840801	2	13.0	2	100	0	52	50	0	0	50	1.00
45844088--45844292	90	2.3	89	82	5	227	34	19	8	38	1.81
45844790--45844925	9	14.7	9	66	15	55	35	2	2	60	1.21
45844789--45844914	55	2.3	55	79	9	130	35	1	2	60	1.19
45844807--45844914	28	3.9	27	77	10	87	37	1	1	59	1.19
45845106--45845284	93	1.9	91	81	6	209	35	12	15	36	1.85
45847235--45847295	26	2.3	26	80	2	68	29	18	8	44	1.78
45849168--45849216	25	2.0	25	88	4	73	26	10	8	55	1.61
45854713--45854752	17	2.4	17	86	0	53	15	5	7	72	1.24
45855051--45855099	20	2.5	19	83	6	62	48	0	0	51	1.00
45859057--45859166	26	4.2	26	90	0	184	33	4	23	38	1.75
45860653--45860704	25	2.0	26	85	3	70	38	23	13	25	1.91
45863806--45863920	51	2.3	51	92	0	185	28	20	16	33	1.95
45870481--45870512	16	2.1	15	94	5	55	0	21	0	78	0.76
45870615--45870658	21	2.1	21	95	0	79	40	4	11	43	1.61
45873035--45873062	1	28.0	1	100	0	56	0	0	0	100	0.00
45877070--45877109	21	1.9	21	84	0	53	37	35	5	22	1.76
45880724--45880869	40	3.7	40	87	7	224	23	23	28	25	2.00
45880717--45880870	80	1.9	80	94	0	272	24	22	28	25	1.99
45888344--45888489	40	3.7	40	88	7	224	23	26	26	23	2.00
45888337--45888490	80	1.9	80	95	0	281	24	24	27	24	2.00
45902230--45902280	20	2.7	18	82	14	59	43	0	19	37	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45902934--45903050	48	2.5	46	84	5	146	29	19	25	25	1.99
45902927--45903146	94	2.3	91	79	5	233	29	19	26	25	1.99
45902927--45903146	46	4.6	48	78	7	182	29	19	26	25	1.99
45903162--45903281	49	2.4	49	80	5	118	28	20	29	22	1.98
45908879--45908930	17	3.0	17	97	2	95	17	30	34	17	1.93
45908880--45908930	9	5.9	9	81	9	70	15	31	35	17	1.92
45909263--45909441	54	3.3	54	81	3	218	38	17	10	32	1.85
45909263--45909456	81	2.4	81	82	4	223	38	19	10	31	1.86
45909263--45909457	27	7.3	27	77	5	189	37	18	11	31	1.87
45909435--45909551	53	2.2	54	89	1	173	35	17	21	25	1.95
45909435--45909551	27	4.4	27	90	2	173	35	17	21	25	1.95
45910471--45910536	24	2.6	25	76	19	66	34	7	0	57	1.27
45910524--45910588	23	2.9	23	81	2	78	30	4	1	63	1.24
45912907--45913158	68	3.9	63	75	12	206	25	28	16	29	1.97
45913823--45913879	30	1.9	30	85	0	78	31	21	7	40	1.80
45915573--45915650	27	2.9	27	81	5	70	25	23	16	34	1.95
45915600--45915650	26	1.9	27	84	4	68	27	23	15	33	1.95
45915842--45915932	32	2.8	33	84	3	103	28	20	25	25	1.99
45926593--45926706	57	2.0	58	81	3	133	27	20	9	42	1.83
45931103--45931167	30	2.2	30	91	0	103	23	38	20	18	1.93
45936439--45936729	47	6.2	47	93	1	451	32	8	31	27	1.87
45939907--45940071	46	3.6	45	77	14	167	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45939908--45940078	93	1.8	93	91	2	281	29	28	20	22	1.98
45939905--45940094	46	4.1	45	71	18	131	29	27	20	22	1.98
45940496--45940555	30	2.0	30	86	0	84	33	25	5	36	1.78
45942042--45942085	22	2.0	22	100	0	88	50	4	9	36	1.55
45943685--45943719	18	1.9	18	94	0	61	62	11	25	0	1.28
45952843--45953108	50	5.5	50	75	8	223	25	27	18	28	1.98
45953791--45953829	20	2.0	20	100	0	78	35	33	0	30	1.58
45961010--45961070	21	2.9	22	80	7	65	18	36	21	24	1.95
45970637--45970693	25	2.3	25	90	0	87	24	22	15	36	1.94
45977154--45977181	9	3.1	9	100	0	56	53	0	10	35	1.36
45978469--45978533	29	2.3	29	83	2	78	29	24	3	43	1.69
45982731--45982757	14	1.9	14	100	0	54	44	7	11	37	1.68
45991810--45991871	28	2.3	27	77	2	70	19	25	25	29	1.99
45991833--45991904	33	2.1	34	85	7	94	23	25	26	25	2.00
45992703--45992740	20	2.0	20	89	5	60	21	13	13	52	1.73
45995035--45995298	24	11.1	24	94	2	435	37	24	17	20	1.94
45995035--45995294	47	5.5	47	91	3	423	36	24	17	20	1.94
45995035--45995298	71	3.7	72	93	2	444	37	24	17	20	1.94
46003055--46003320	24	11.1	24	96	0	462	36	25	17	20	1.94
46008907--46009072	40	4.2	40	78	8	162	25	22	27	24	2.00
46008907--46009056	79	1.9	79	84	5	205	26	22	27	24	2.00
46016911--46017061	40	3.8	40	79	6	155	25	22	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46021835--46022101	24	11.1	24	98	0	462	35	25	18	20	1.95
46029865--46030131	24	11.1	24	97	0	471	36	25	17	20	1.95
46037872--46038135	24	11.1	24	94	2	435	36	25	17	20	1.94
46037878--46038135	95	2.7	95	96	0	473	36	25	17	20	1.94
46037872--46038135	71	3.7	72	93	2	444	36	25	17	20	1.94
46043389--46043458	27	2.6	27	93	2	113	30	28	14	27	1.95
46050524--46050559	17	2.1	17	100	0	72	27	33	5	33	1.80
46059850--46059889	17	2.4	17	95	0	71	15	22	32	30	1.94
46063972--46064035	31	2.1	31	100	0	128	39	9	7	43	1.66
46078672--46078718	19	2.5	19	82	6	60	42	0	29	27	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335