Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  97  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31044749--31044821
3
24.3
3
100
0
146
32
0
0
67
0.91
31050268--31050365
3
32.7
3
97
0
187
32
1
0
66
0.99
31054041--31054067
6
4.5
6
100
0
54
29
0
14
55
1.40
31054109--31054170
18
3.3
19
72
19
58
37
3
0
59
1.13
31054084--31054171
38
2.3
38
77
15
92
38
2
3
55
1.29
31058346--31058397
26
2.0
26
100
0
104
34
15
19
30
1.93
31063185--31063242
28
2.0
30
83
12
77
56
0
1
41
1.09
31069554--31070147
45
12.9
45
70
14
298
28
22
17
31
1.96
31069555--31069730
96
1.8
95
84
6
239
27
25
17
28
1.98
31069695--31069869
95
1.8
96
86
3
255
27
25
18
29
1.98
31069555--31070147
137
4.3
139
85
4
660
28
22
17
31
1.96
31077773--31077816
19
2.2
20
84
4
54
45
4
20
29
1.71
31081929--31081964
18
1.9
19
88
5
56
47
2
13
36
1.58
31081977--31082017
21
1.9
22
85
5
57
56
0
9
34
1.32
31083312--31083351
20
2.0
20
85
4
55
0
22
12
65
1.26
31088134--31088172
20
2.0
20
90
10
62
43
0
5
51
1.24
31089725--31089819
45
2.1
45
92
7
158
22
15
18
43
1.88
31089725--31089831
45
2.4
45
89
9
148
21
16
18
42
1.89
31089815--31089847
12
2.8
12
100
0
66
18
27
15
39
1.90
31089815--31089863
24
2.0
24
84
0
62
14
24
16
44
1.84
31107471--31107516
9
5.2
9
84
2
58
67
2
0
30
1.03
31107459--31107554
28
3.4
29
69
15
85
57
1
0
41
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31108079--31108118
20
1.9
20
85
10
53
32
12
0
55
1.38
31110020--31110066
21
2.2
21
88
0
67
29
2
27
40
1.68
31131131--31131181
10
5.0
10
82
2
57
21
5
1
70
1.18
31131131--31131180
20
2.5
20
86
0
64
22
6
2
70
1.20
31132542--31132572
15
2.0
16
93
6
55
45
19
9
25
1.81
31137839--31137888
24
2.1
24
92
0
82
32
4
42
22
1.72
31139328--31139429
27
3.8
26
79
8
114
16
22
21
39
1.92
31141715--31142280
44
12.5
44
72
9
352
33
16
19
29
1.94
31141715--31142226
228
2.2
229
88
2
728
33
16
19
30
1.94
31143162--31143199
20
1.9
20
88
0
58
15
34
36
13
1.87
31143823--31143854
14
2.3
14
94
0
55
12
3
0
84
0.74
31143961--31144001
14
2.8
15
88
7
66
31
9
2
56
1.45
31144060--31144092
17
1.9
17
100
0
66
33
0
0
66
0.92
31145784--31145821
15
2.7
14
92
8
60
76
0
23
0
0.79
31153021--31153053
4
8.2
4
100
0
66
75
0
24
0
0.80
31159215--31159261
20
2.3
20
85
7
60
61
6
0
31
1.21
31160272--31160306
18
2.0
18
94
5
63
68
0
2
28
1.04
31160941--31161006
13
5.1
13
79
0
69
37
9
15
37
1.79
31161477--31161501
13
1.9
13
100
0
50
32
8
12
48
1.69
31169470--31169513
20
2.4
18
79
17
54
34
0
11
54
1.36
31182808--31182879
28
2.5
31
75
13
80
43
6
2
47
1.45
31183578--31183625
3
16.0
3
100
0
96
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31185126--31185190
20
3.3
20
82
14
73
69
3
27
0
1.03
31185953--31185985
18
1.9
18
88
11
52
27
0
18
54
1.44
31186861--31187063
10
20.9
10
66
19
58
61
3
3
30
1.32
31186954--31187003
21
2.4
22
81
18
63
60
6
0
34
1.21
31186970--31187009
21
1.9
21
85
10
55
62
7
0
30
1.23
31186968--31187062
19
5.1
18
69
15
68
64
3
2
30
1.21
31186962--31187054
39
2.4
40
80
8
102
64
3
2
30
1.21
31191740--31191778
15
2.6
15
87
0
51
12
0
33
53
1.39
31191857--31191987
34
3.9
33
75
11
106
42
0
15
41
1.52
31192048--31192410
125
2.9
126
84
5
484
39
15
15
29
1.89
31192048--31192412
127
2.9
126
84
4
479
38
15
15
30
1.88
31194259--31194301
18
2.4
18
88
0
59
44
9
25
20
1.81
31194884--31194908
7
3.6
7
100
0
50
60
12
0
28
1.32
31198509--31198551
15
2.9
15
85
0
59
32
4
2
60
1.30
31199680--31199743
30
2.1
30
86
11
87
29
21
12
35
1.91
31202379--31202442
33
1.9
34
87
9
96
56
4
0
39
1.20
31202385--31202439
17
3.3
17
72
10
51
60
3
0
36
1.15
31202392--31202450
17
3.5
17
69
21
52
55
3
0
40
1.16
31204187--31204269
42
2.0
42
92
4
141
30
28
16
24
1.97
31207216--31207312
41
2.4
41
80
1
124
28
22
9
39
1.85
31207483--31207530
8
6.2
8
90
4
64
22
0
2
75
0.91
31207470--31207516
23
2.0
23
83
0
58
34
0
2
63
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31207483--31207548
23
2.9
22
86
4
78
25
1
1
71
1.04
31207483--31207546
15
4.3
15
82
6
76
26
1
1
70
1.05
31207483--31207546
7
8.6
7
81
8
65
26
1
1
70
1.05
31208998--31209155
18
8.8
18
88
4
223
37
10
13
37
1.79
31208998--31209155
35
4.4
35
88
5
228
37
10
13
37
1.79
31208998--31209142
53
2.7
53
94
3
247
37
10
14
37
1.80
31209665--31209724
17
3.5
17
74
21
63
33
1
0
65
1.03
31209666--31209724
16
3.5
16
76
23
59
33
1
0
64
1.04
31209701--31209750
26
1.9
26
87
0
73
36
2
0
62
1.07
31211168--31211219
7
7.4
7
77
0
50
50
23
0
26
1.50
31211168--31211219
14
3.7
14
81
0
59
50
23
0
26
1.50
31211385--31211604
41
5.4
41
83
3
221
22
20
21
35
1.96
31211385--31211634
123
2.0
124
82
3
299
22
20
21
36
1.96
31214314--31214421
26
4.2
26
93
0
189
36
24
7
32
1.83
31215665--31215714
21
2.3
22
86
6
75
60
36
2
2
1.20
31215667--31215712
12
4.2
11
78
18
51
63
32
2
2
1.19
31216533--31217036
244
2.1
244
96
0
936
24
17
12
46
1.82
31217020--31217091
3
24.0
3
82
0
90
33
8
0
58
1.28
31217424--31217457
16
2.1
16
89
10
52
23
11
8
55
1.63
31219437--31219471
12
2.9
12
91
0
52
17
25
17
40
1.90
31219950--31219997
23
2.0
24
96
4
89
47
4
8
39
1.53
31221916--31222029
44
2.5
46
83
9
137
29
19
28
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31235262--31235949
140
5.0
140
78
7
701
28
19
20
31
1.97
31236930--31236976
21
2.2
21
88
0
67
29
0
21
48
1.50
31236965--31237054
28
3.2
27
73
14
76
21
1
30
47
1.58
31237065--31237287
111
2.0
111
92
0
374
35
15
20
28
1.93
31238585--31238616
15
2.1
15
100
0
64
21
12
31
34
1.91
31240939--31241388
35
12.4
37
69
17
169
24
20
16
39
1.92
31240929--31241381
72
6.3
73
77
4
330
23
20
16
39
1.92
31241064--31241381
145
2.2
146
82
8
366
23
22
15
38
1.92
31241325--31241400
38
2.0
38
86
0
107
23
23
17
35
1.95
31242042--31242142
44
2.3
44
89
0
148
28
18
19
32
1.96
31241999--31242165
44
3.8
43
80
5
138
28
15
24
31
1.96
31241999--31242298
133
2.3
133
78
5
286
30
17
22
29
1.97
31242998--31243041
13
3.2
13
81
18
54
47
0
0
52
1.00
31244278--31244369
44
2.1
44
85
4
123
21
20
22
34
1.96
31244353--31244463
47
2.4
47
80
4
118
16
21
23
38
1.92
31244528--31244639
36
3.1
35
79
5
125
33
12
16
36
1.87
31244528--31244639
18
6.2
18
75
8
93
33
12
16
36
1.87
31246865--31246942
39
2.0
39
100
0
156
20
15
30
33
1.94
31247238--31247297
3
20.0
3
85
0
57
31
11
0
56
1.35
31247250--31247297
21
2.3
21
92
0
78
33
12
0
54
1.38
31247238--31247297
18
3.3
18
83
0
75
31
11
0
56
1.35
31247628--31247662
16
2.1
17
89
5
54
22
11
8
57
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31250606--31250691
41
2.1
41
93
0
145
26
15
9
48
1.74
31266386--31266448
29
2.2
28
81
15
76
58
12
12
15
1.63
31266931--31266963
3
11.0
3
100
0
66
66
0
0
33
0.92
31275317--31275525
108
1.9
107
80
7
244
30
11
11
47
1.74
31279211--31279269
19
3.1
19
82
7
57
30
1
3
64
1.20
31279234--31279275
19
2.2
20
86
4
59
42
0
0
57
0.99
31279237--31279292
28
2.0
27
82
3
67
46
0
0
53
1.00
31282738--31282774
2
18.5
2
100
0
74
51
0
0
48
1.00
31289909--31289968
31
1.9
31
83
10
77
33
1
0
65
1.03
31292282--31292331
23
2.2
23
82
7
57
10
40
42
8
1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335