Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  103  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32450352--32450400
24
2.0
25
84
4
64
69
2
0
28
1.00
32450508--32450577
34
2.0
35
97
2
133
40
14
5
40
1.69
32450508--32450587
34
2.4
34
91
6
119
35
13
5
46
1.65
32454616--32454672
21
2.8
20
77
17
64
61
3
14
21
1.47
32455241--32455483
3
78.7
3
69
12
75
59
3
10
27
1.46
32459993--32460087
46
2.1
46
100
0
190
47
8
8
35
1.64
32460428--32460459
2
16.0
2
100
0
64
50
0
0
50
1.00
32461338--32461373
17
2.1
18
89
5
56
19
0
5
75
1.00
32461393--32461420
14
2.0
14
100
0
56
42
0
0
57
0.99
32461385--32461446
20
3.0
20
69
4
52
40
0
1
58
1.08
32463359--32463397
21
1.9
21
84
5
53
35
23
10
30
1.88
32468611--32468668
25
2.3
25
82
5
64
37
20
15
25
1.92
32468655--32468787
25
5.3
25
72
12
94
39
20
15
24
1.91
32468636--32468787
50
3.0
49
81
7
164
38
20
15
25
1.91
32471234--32471265
12
2.6
13
90
9
50
0
18
0
81
0.70
32471339--32471374
16
2.2
16
95
0
63
58
0
0
41
0.98
32471397--32471439
23
2.0
21
82
17
52
39
11
6
41
1.68
32473947--32473988
16
2.5
17
78
21
52
47
0
9
42
1.36
32475127--32475151
13
1.9
13
100
0
50
52
0
0
48
1.00
32477228--32477260
17
2.0
17
88
5
50
48
3
6
42
1.43
32484692--32484730
14
2.6
14
88
8
51
61
0
5
33
1.18
32484692--32484747
15
3.9
15
78
15
57
60
0
7
32
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32485298--32485333
18
2.0
18
89
10
56
30
0
0
69
0.89
32487366--32487503
21
6.6
21
85
1
136
49
18
19
13
1.79
32491593--32491646
3
18.0
3
79
7
56
31
3
1
62
1.23
32491704--32491751
17
2.9
16
82
14
53
35
4
2
58
1.29
32492349--32492382
18
1.9
17
88
5
50
32
8
8
50
1.64
32494897--32494943
23
2.0
23
100
0
94
70
0
4
25
1.05
32498079--32498129
24
2.0
24
85
11
66
45
1
0
52
1.12
32508231--32508271
6
6.8
6
97
0
73
53
0
46
0
1.00
32508775--32508818
18
2.5
17
82
13
54
15
0
27
56
1.40
32508818--32508885
26
2.6
26
100
0
136
44
0
14
41
1.45
32508869--32508909
16
2.5
17
77
22
52
58
0
0
41
0.98
32509038--32509377
126
2.7
126
84
0
403
37
16
19
27
1.93
32510572--32510657
42
2.0
42
100
0
172
52
6
4
36
1.49
32511087--32511122
18
2.0
18
94
0
63
38
2
27
30
1.71
32511739--32511790
7
7.4
7
93
0
86
57
11
1
28
1.44
32512705--32512815
47
2.3
50
82
9
147
59
2
4
33
1.32
32512960--32513004
22
2.0
22
91
8
74
37
0
24
37
1.56
32516513--32516666
25
6.1
24
70
10
94
30
6
3
59
1.41
32516484--32516662
52
3.4
49
69
11
124
29
8
3
58
1.44
32516618--32516689
37
1.9
37
82
0
90
25
2
5
66
1.27
32516606--32516729
64
2.0
62
84
6
160
25
4
4
65
1.30
32517465--32517511
19
2.4
20
96
3
87
48
17
10
23
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32517538--32517681
26
5.7
24
81
14
159
31
3
1
63
1.19
32517537--32517681
52
2.8
51
85
12
176
31
4
1
63
1.22
32521689--32521717
14
2.1
14
100
0
58
31
20
6
41
1.79
32522970--32523029
17
3.5
17
74
21
63
33
1
0
65
1.03
32522971--32523029
16
3.5
16
76
23
59
33
1
0
64
1.04
32523006--32523055
26
1.9
26
83
0
64
36
4
0
60
1.16
32523299--32523354
27
2.1
27
100
0
112
33
3
7
55
1.45
32529960--32530038
37
2.1
37
88
4
115
26
18
15
39
1.91
32535478--32535554
3
25.7
3
100
0
154
67
0
0
32
0.91
32535670--32535731
29
2.2
28
80
11
72
67
1
4
25
1.19
32537280--32537317
2
19.0
2
100
0
76
50
0
0
50
1.00
32541053--32541211
37
4.3
38
75
13
161
38
19
18
22
1.93
32542134--32542222
35
2.5
35
81
7
108
37
16
12
33
1.87
32544009--32544042
17
2.1
16
89
10
52
47
0
8
44
1.34
32545160--32545316
24
6.5
24
85
2
201
23
14
30
31
1.94
32545161--32545339
48
3.8
47
87
2
234
24
13
30
30
1.94
32545162--32545299
72
1.9
72
90
0
222
23
14
30
31
1.94
32545160--32545340
24
7.6
23
73
12
82
24
13
30
30
1.94
32551594--32551627
17
2.1
16
89
10
52
47
0
8
44
1.34
32552760--32552916
24
6.5
24
87
1
208
24
14
29
31
1.95
32552762--32552899
72
1.9
72
93
0
240
23
13
29
32
1.93
32552882--32552941
24
2.5
24
83
0
66
25
18
30
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32552783--32552932
48
3.1
48
83
3
133
24
15
30
30
1.96
32552762--32552940
72
2.5
72
85
5
220
24
14
29
31
1.95
32555450--32555625
46
3.8
46
81
10
232
20
21
29
28
1.98
32555447--32555617
93
1.8
93
96
0
315
20
22
29
27
1.98
32558578--32558646
15
4.6
15
83
0
84
11
17
13
57
1.64
32558569--32558656
30
3.0
30
81
8
99
10
17
15
56
1.66
32561007--32561187
46
3.9
46
81
9
233
20
21
29
27
1.98
32561009--32561179
93
1.8
93
96
0
315
20
22
29
27
1.98
32562855--32563379
44
11.9
43
75
5
401
29
23
16
31
1.96
32562899--32563199
133
2.3
133
80
4
340
28
22
16
31
1.96
32562897--32563289
133
3.0
131
75
5
335
29
22
16
31
1.96
32562897--32563292
89
4.5
89
84
3
471
29
22
16
31
1.96
32565289--32565396
43
2.5
43
80
4
130
32
16
23
27
1.96
32572168--32572237
28
2.5
28
75
11
72
35
20
0
44
1.52
32572631--32572671
15
2.9
14
82
10
57
56
0
0
43
0.99
32572806--32572831
3
8.7
3
100
0
52
65
0
0
34
0.93
32576237--32576276
18
2.2
18
86
0
53
37
17
12
32
1.87
32577505--32577544
19
2.0
20
86
13
57
5
17
2
75
1.10
32577505--32577556
18
2.8
19
83
13
56
5
15
3
75
1.14
32577566--32577590
13
1.9
13
100
0
50
60
0
0
40
0.97
32582735--32582768
2
17.0
2
100
0
68
50
0
0
50
1.00
32583030--32583073
3
14.7
3
100
0
88
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32583072--32583127
3
19.0
3
92
3
96
33
0
1
64
1.04
32583279--32583337
30
1.9
32
86
6
86
50
5
5
38
1.46
32591042--32591095
20
2.7
20
83
13
58
74
1
3
20
1.07
32591050--32591131
22
3.9
21
69
20
53
70
2
4
21
1.18
32592705--32592741
18
2.0
19
89
5
58
24
0
2
72
0.97
32594312--32594358
8
5.9
8
82
9
51
65
0
0
34
0.93
32594315--32594358
16
2.8
16
83
13
63
63
0
0
36
0.95
32594312--32594358
24
2.0
23
91
4
76
65
0
0
34
0.93
32597037--32597275
130
1.8
130
83
3
320
32
20
21
25
1.98
32597316--32597677
131
2.8
131
83
2
343
32
17
18
30
1.94
32598665--32598711
2
23.5
2
100
0
94
48
0
0
51
1.00
32600611--32600791
87
2.1
87
90
0
281
29
22
19
28
1.98
32600808--32601112
44
7.0
44
84
4
384
26
29
15
28
1.96
32600808--32601082
132
2.1
132
89
0
424
26
29
16
28
1.96
32603141--32603313
46
3.7
46
79
14
212
21
20
28
29
1.98
32603138--32603308
93
1.8
93
94
2
308
21
21
29
28
1.98
32610705--32610829
46
2.7
46
93
3
209
21
21
27
29
1.99
32626736--32626773
19
2.0
19
85
10
51
55
28
0
15
1.41
32629246--32629285
19
2.1
19
95
0
71
32
10
12
45
1.75
32630044--32630088
11
3.8
11
81
16
54
17
2
4
75
1.07
32632030--32632131
48
2.1
48
90
0
159
28
22
17
31
1.97
32632111--32632197
37
2.3
38
86
5
124
27
22
19
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32634450--32634506
28
2.0
28
96
0
105
29
19
12
38
1.88
32640495--32640523
2
14.5
2
100
0
58
51
0
0
48
1.00
32645067--32645126
30
2.0
31
83
3
77
40
20
25
15
1.90
32649572--32649607
3
12.0
3
87
0
54
30
2
36
30
1.72
32658949--32658983
2
17.5
2
100
0
70
48
0
0
51
1.00
32659410--32659452
13
3.4
12
87
6
50
67
2
0
30
1.03
32660442--32660484
20
2.0
22
91
8
72
60
2
0
37
1.10
32660442--32660492
20
2.4
21
87
12
70
60
3
0
35
1.15
32660448--32660491
21
2.1
21
87
8
63
63
4
0
31
1.14
32664326--32664367
14
2.9
15
75
13
52
28
11
0
59
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335