genome.fa.s5.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  115  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35282321--35282354	18	1.9	17	94	5	59	50	2	0	47	1.16
35284049--35284135	44	2.0	44	97	0	165	45	16	5	32	1.70
35287644--35287695	6	8.3	6	85	8	59	21	3	19	55	1.58
35292034--35292082	16	3.0	17	85	8	66	32	2	0	65	1.04
35295623--35295685	31	2.0	31	87	6	92	38	17	6	38	1.75
35296333--35296370	16	2.3	17	86	4	51	44	2	2	50	1.30
35297644--35297684	5	8.0	5	94	5	73	39	0	0	60	0.96
35297719--35297779	30	2.0	30	81	9	70	59	6	34	0	1.24
35299245--35299379	39	3.4	39	76	8	123	23	20	27	28	1.99
35305431--35305471	5	8.0	5	94	5	73	39	0	0	60	0.96
35305506--35305566	30	2.0	30	81	9	70	59	6	34	0	1.24
35307033--35307167	39	3.4	39	76	8	123	23	20	27	28	1.99
35308330--35308397	34	2.0	34	97	0	127	44	22	23	10	1.83
35316378--35316746	184	2.0	184	99	0	729	43	5	10	40	1.62
35318663--35318783	39	3.1	39	93	0	206	13	26	23	36	1.92
35319801--35319827	13	2.1	13	100	0	54	40	7	22	29	1.81
35320131--35320244	62	1.9	59	83	8	149	40	4	3	51	1.39
35324303--35324361	23	2.5	23	77	2	64	45	16	8	28	1.77
35325903--35325933	13	2.3	14	94	5	55	51	6	0	41	1.27
35326745--35326781	9	4.4	8	90	6	56	83	2	13	0	0.74
35326745--35326781	17	2.2	16	86	13	56	83	2	13	0	0.74
35328166--35328240	37	2.0	37	100	0	150	41	18	16	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35333559--35333596	6	6.3	6	85	11	51	47	2	0	50	1.15
35333597--35333651	23	2.4	23	79	11	76	45	0	7	47	1.30
35333796--35333827	12	2.6	13	85	14	50	18	0	0	81	0.70
35337639--35337679	21	1.9	22	85	5	57	29	9	19	41	1.83
35344241--35344273	13	2.5	13	95	0	57	15	18	39	27	1.90
35345150--35345212	31	2.0	31	100	0	126	46	15	9	28	1.78
35345452--35345610	43	3.7	43	77	7	162	33	24	14	27	1.94
35346235--35346273	20	2.0	20	85	5	53	53	17	2	25	1.56
35348983--35349150	6	27.3	6	70	15	112	49	16	16	17	1.80
35348992--35349149	19	8.6	18	71	15	72	49	16	16	17	1.80
35349039--35349150	31	3.6	31	87	2	163	50	17	13	17	1.77
35349010--35349150	62	2.3	62	85	2	185	48	17	16	17	1.81
35349283--35349355	27	2.8	26	82	2	83	36	17	24	20	1.94
35349514--35349575	22	2.8	23	82	7	74	35	20	20	22	1.96
35350004--35350334	27	12.3	27	87	3	454	23	21	20	33	1.97
35350356--35350595	81	3.0	78	78	7	194	30	11	20	37	1.88
35350451--35350597	53	2.7	53	85	2	168	29	10	21	38	1.87
35350319--35350601	27	10.5	27	77	3	167	30	9	21	37	1.86
35352555--35352713	6	25.8	6	71	16	103	49	15	15	18	1.79
35352555--35352713	19	8.6	18	69	18	103	49	15	15	18	1.79
35352602--35352713	31	3.6	31	88	0	179	50	17	13	17	1.77
35352587--35352709	62	2.0	62	91	0	201	49	17	14	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35352844--35352917	27	2.8	27	85	2	96	37	20	24	17	1.93
35353076--35353140	22	3.0	22	77	8	69	35	23	21	20	1.96
35353567--35353869	27	11.3	27	88	1	421	23	22	21	32	1.98
35353854--35353942	27	3.3	27	76	6	90	28	7	26	37	1.84
35353919--35354035	27	4.4	27	78	8	98	32	11	18	36	1.88
35353901--35354128	54	4.3	54	75	9	173	31	11	20	36	1.88
35353962--35354129	53	3.2	53	80	6	171	31	10	19	38	1.86
35353973--35354134	27	6.1	27	79	4	177	32	9	19	37	1.85
35365748--35365833	21	4.1	21	86	0	100	36	25	22	16	1.94
35367264--35367299	15	2.3	17	81	18	51	0	30	0	69	0.89
35372334--35372376	18	2.5	17	78	17	52	18	25	6	48	1.73
35373634--35373719	21	4.1	21	86	0	100	36	25	22	16	1.94
35375141--35375176	15	2.3	17	81	18	51	0	30	0	69	0.89
35380842--35381608	159	4.9	158	88	4	1011	31	18	23	27	1.97
35382257--35382342	42	2.0	42	93	0	145	39	18	20	20	1.93
35383154--35383192	6	6.3	6	88	5	60	69	2	15	12	1.30
35385925--35385965	3	13.7	3	100	0	82	34	0	0	65	0.93
35385955--35385996	16	2.7	16	78	14	52	42	0	0	57	0.99
35385925--35385999	9	8.5	10	80	19	64	38	0	0	61	0.96
35387241--35387276	18	2.1	18	89	5	56	41	0	25	33	1.55
35387573--35387609	18	2.1	18	89	0	56	48	0	27	24	1.51
35389185--35389581	198	2.0	198	94	0	704	30	14	21	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35391364--35391402	13	3.0	13	96	0	69	25	0	0	74	0.82
35395587--35395637	25	2.0	25	96	0	93	37	21	9	31	1.86
35396734--35396782	3	16.7	3	91	4	82	69	0	0	30	0.89
35403562--35403588	11	2.5	11	100	0	54	48	7	0	44	1.31
35403978--35404016	16	2.5	16	83	4	53	61	0	2	35	1.10
35408659--35408701	11	3.7	11	76	11	50	34	4	13	46	1.65
35408660--35408707	24	2.0	24	100	0	96	37	4	16	41	1.68
35409701--35409734	13	2.6	13	90	0	50	82	5	8	2	0.93
35409841--35409870	16	1.9	16	93	6	53	0	56	0	43	0.99
35414916--35414964	8	5.9	8	81	13	55	85	8	6	0	0.73
35414913--35414972	12	5.2	12	74	8	61	85	8	5	1	0.81
35416784--35416824	18	2.3	18	95	0	73	43	21	21	12	1.85
35417496--35417655	55	2.9	55	93	0	266	30	13	19	36	1.91
35417673--35417707	14	2.5	14	100	0	70	17	20	5	57	1.60
35417598--35417771	89	2.0	88	93	1	294	28	18	18	35	1.94
35417688--35418102	75	5.3	75	77	13	422	30	16	20	32	1.95
35417603--35418010	164	2.5	162	87	4	586	28	17	21	32	1.95
35417764--35417938	89	1.9	90	90	2	280	26	15	22	35	1.94
35417687--35418147	239	1.9	237	88	4	681	29	16	21	32	1.95
35417945--35418098	82	1.9	82	87	2	229	34	15	21	28	1.94
35418083--35418116	13	2.5	13	90	4	50	20	11	8	58	1.59
35418112--35418310	53	3.7	52	85	4	254	29	16	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35419598--35419631	13	2.6	13	90	0	50	82	5	8	2	0.93
35419749--35419778	16	1.9	16	93	6	53	0	56	0	43	0.99
35422237--35422359	51	2.4	51	90	2	185	39	10	22	27	1.87
35422959--35423017	23	2.6	23	97	0	109	6	5	42	45	1.52
35427578--35427629	20	2.6	20	87	6	70	11	30	40	17	1.85
35427618--35427647	13	2.3	13	94	0	51	6	36	53	3	1.44
35428462--35428508	12	3.8	12	77	22	53	46	0	6	46	1.28
35428455--35428507	25	2.3	23	84	15	65	45	0	5	49	1.26
35429290--35429338	18	2.7	19	84	12	59	71	2	8	18	1.21
35429274--35429355	13	6.8	12	69	15	53	70	1	7	20	1.18
35429298--35429355	31	1.9	30	86	10	82	74	1	6	17	1.12
35429290--35429345	19	3.0	19	78	17	55	69	1	8	19	1.24
35433714--35433769	11	4.9	11	77	14	51	78	1	12	7	1.02
35433725--35433778	17	3.1	17	78	2	63	77	3	11	7	1.09
35433714--35433768	6	9.5	6	77	15	53	80	1	12	5	0.97
35435918--35435951	15	2.2	16	94	5	61	64	0	0	35	0.94
35436220--35436310	47	1.9	47	100	0	182	31	13	6	48	1.68
35436331--35436389	31	1.9	31	86	6	84	22	15	10	52	1.72
35436949--35437006	3	19.3	3	100	0	116	67	0	0	32	0.91
35438032--35438085	15	3.3	15	74	18	54	44	0	1	53	1.11
35438668--35438757	44	2.0	44	95	0	162	40	17	13	28	1.88
35446776--35447482	164	4.5	163	85	8	887	31	24	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35453115--35453240	58	2.2	58	95	1	225	30	6	8	54	1.56
35455718--35455743	8	3.2	8	100	0	52	38	0	50	11	1.39
35457733--35457772	21	1.9	21	90	10	64	25	10	10	55	1.64
35458106--35458134	7	4.1	7	100	0	58	58	0	0	41	0.98
35482461--35482502	14	3.1	14	82	3	59	33	0	0	66	0.92
35483088--35483131	22	2.0	22	86	0	61	65	4	0	29	1.12
35486906--35486962	20	2.8	21	87	10	75	14	10	3	71	1.25
35489623--35489668	19	2.4	19	89	7	67	19	21	13	45	1.84
35491194--35491241	23	2.1	23	96	0	87	50	8	18	22	1.74
35513755--35513806	19	2.9	17	78	10	59	46	17	15	21	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335