genome.fa.s5.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  195  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58632692--58632810	43	2.8	43	80	2	123	31	27	15	25	1.96
58641995--58642166	93	1.8	93	92	2	292	29	28	20	21	1.98
58641988--58642163	46	3.8	45	76	11	178	30	28	20	21	1.98
58647963--58648152	39	4.9	39	93	1	310	21	31	22	24	1.98
58647963--58648153	77	2.4	78	91	2	312	21	31	22	24	1.98
58655953--58656143	39	4.9	39	94	0	310	21	30	23	24	1.99
58666548--58666801	55	4.8	54	75	12	217	22	23	16	37	1.94
58668822--58668983	40	4.1	40	81	1	182	26	27	21	24	1.99
58672223--58672488	27	9.9	27	79	2	248	31	21	7	39	1.82
58672199--58672459	81	3.2	80	82	3	301	31	21	8	39	1.82
58672224--58672458	107	2.2	108	86	3	323	30	21	8	40	1.82
58672223--58672459	54	4.4	54	82	3	280	30	21	8	40	1.82
58672438--58672523	27	3.2	27	85	3	93	41	23	5	29	1.77
58672452--58672606	27	5.8	27	75	8	93	40	21	10	27	1.87
58672452--58672579	54	2.4	54	80	1	123	41	21	8	28	1.82
58672567--58672780	27	8.0	27	87	1	281	35	18	20	24	1.95
58672985--58673054	25	2.8	25	91	0	113	27	25	21	25	1.99
58673106--58673197	38	2.4	38	96	0	166	15	10	39	34	1.82
58673313--58673427	31	3.7	31	94	1	196	27	15	26	29	1.96
58674225--58674262	16	2.4	16	95	0	67	18	7	23	50	1.73
58674225--58674269	16	2.8	16	89	3	54	24	6	20	48	1.73
58675707--58675890	27	6.8	27	91	0	260	28	22	8	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58675696--58675932	54	4.4	54	82	2	251	31	22	8	36	1.85
58675842--58676033	27	7.2	27	79	4	111	36	20	9	32	1.85
58675707--58675919	81	2.6	80	82	2	264	30	22	8	38	1.85
58675869--58676063	27	7.3	27	78	8	121	37	21	11	29	1.88
58676024--58676182	27	6.0	27	87	3	227	33	21	22	22	1.97
58676018--58676167	80	1.9	79	85	4	210	34	21	22	22	1.97
58676018--58676167	53	2.8	53	88	2	228	34	21	22	22	1.97
58676387--58676456	25	2.8	25	93	0	113	25	25	21	27	1.99
58676388--58676469	25	3.4	24	82	12	80	26	24	21	26	2.00
58676677--58676822	31	4.7	31	89	0	231	28	14	26	30	1.95
58678778--58678845	32	2.1	32	97	0	127	27	10	19	42	1.83
58682178--58682222	21	2.1	21	95	0	81	33	8	17	40	1.81
58682310--58682356	17	2.7	19	75	18	50	42	19	17	21	1.89
58684002--58684033	15	2.0	17	88	11	50	43	31	0	25	1.55
58691360--58691446	24	3.6	24	100	0	174	35	26	17	20	1.95
58693673--58693808	26	5.3	26	86	5	181	25	23	22	28	1.99
58693673--58693808	52	2.7	51	92	5	215	25	23	22	28	1.99
58701146--58701332	6	30.8	6	74	16	145	47	12	17	22	1.81
58701146--58701332	30	6.4	30	82	11	244	47	12	17	22	1.81
58701146--58701332	85	2.2	85	93	0	311	47	12	17	22	1.81
58701451--58701523	27	2.7	26	81	6	74	38	17	24	19	1.93
58701688--58701746	22	2.7	22	81	0	64	32	22	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58701834--58701916	27	3.1	26	84	5	103	37	20	21	20	1.95
58702106--58702293	27	7.0	27	86	4	204	39	8	23	27	1.84
58702106--58702293	54	3.5	53	87	7	263	39	8	23	27	1.84
58702106--58702293	81	2.3	81	85	5	256	39	8	23	27	1.84
58706149--58706308	27	6.0	27	85	5	200	38	20	10	31	1.85
58706149--58706308	53	3.0	53	87	2	214	38	20	10	31	1.85
58706149--58706322	80	2.2	80	84	9	212	38	18	10	32	1.85
58706316--58706377	27	2.3	27	88	0	88	37	20	19	22	1.95
58709860--58710044	40	4.7	40	82	7	209	23	22	27	25	2.00
58709915--58710067	79	1.9	79	84	7	204	25	20	28	26	1.99
58714247--58714436	40	4.8	40	94	0	326	24	19	28	27	1.98
58715183--58715319	40	3.4	40	84	8	154	25	23	26	24	2.00
58715262--58715345	40	2.1	40	82	4	98	26	27	26	20	1.99
58718169--58718419	49	5.1	49	99	0	475	34	9	26	29	1.87
58722354--58722405	26	2.0	26	92	0	86	21	17	21	40	1.91
58728567--58728604	19	2.0	20	85	15	53	39	23	0	36	1.55
58728829--58729001	46	3.7	46	78	10	199	31	26	19	22	1.98
58733423--58733486	31	2.1	31	96	0	119	23	21	15	39	1.92
58733678--58733820	24	6.0	24	90	7	202	25	22	22	29	1.99
58733678--58733819	47	3.0	48	89	7	200	26	22	22	28	1.99
58733677--58733820	71	2.0	72	88	6	213	25	22	22	29	1.99
58733871--58733930	20	3.0	20	95	0	111	33	20	10	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58733871--58733925	11	5.4	11	70	16	55	30	20	10	38	1.87
58737167--58737235	27	2.5	28	90	2	113	33	27	13	26	1.93
58738112--58738136	7	3.6	7	100	0	50	60	28	0	12	1.32
58740687--58740879	40	4.8	40	84	7	207	25	26	21	25	2.00
58741456--58741549	38	2.5	38	100	0	188	31	27	13	26	1.94
58745128--58745165	19	2.0	20	85	15	53	39	23	0	36	1.55
58745394--58745560	45	3.7	45	80	13	182	29	28	19	22	1.98
58745395--58745563	92	1.8	92	91	2	277	29	28	19	21	1.98
58749947--58749995	21	2.3	21	82	6	55	22	2	2	73	1.04
58761800--58761912	40	2.8	40	83	1	129	23	28	23	24	2.00
58766614--58766717	39	2.6	39	81	1	127	25	20	29	25	1.99
58772803--58772863	30	2.0	30	90	0	95	39	6	24	29	1.80
58779985--58780178	51	3.9	48	79	6	201	26	28	19	25	1.99
58779999--58780182	101	1.8	99	86	4	262	27	29	18	25	1.98
58784259--58784322	32	2.0	32	87	0	92	40	15	17	26	1.89
58784600--58784628	14	2.1	14	100	0	58	0	20	0	79	0.74
58787338--58787369	16	2.0	16	93	0	55	50	15	18	15	1.79
58787595--58787674	29	2.8	29	90	1	126	25	17	31	26	1.97
58788789--58788822	18	1.9	18	88	5	52	41	11	17	29	1.85
58798051--58798211	38	4.2	38	87	3	207	20	21	26	32	1.97
58798051--58798216	76	2.2	78	86	2	228	20	20	25	33	1.97
58799614--58799783	40	4.2	40	85	3	225	21	28	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58807710--58807879	40	4.2	40	85	3	225	21	28	24	25	1.99
58817026--58817080	28	2.0	28	85	7	76	30	27	14	27	1.95
58821507--58821645	42	3.2	43	78	9	113	28	24	18	28	1.98
58825897--58825943	18	2.6	18	82	0	58	21	21	12	44	1.85
58828924--58829111	49	3.9	49	95	2	346	32	8	28	30	1.87
58828922--58829111	95	2.0	97	96	3	357	32	8	28	30	1.87
58829198--58829288	37	2.4	37	96	1	164	23	18	32	25	1.97
58831104--58831334	40	5.8	40	94	3	403	24	19	29	26	1.99
58834901--58835091	49	3.9	49	97	0	364	32	8	28	30	1.87
58835176--58835266	37	2.4	37	96	1	164	23	18	32	25	1.97
58839157--58839299	39	3.7	39	90	2	234	22	30	20	26	1.99
58839117--58839298	77	2.3	79	89	2	269	23	29	22	24	1.99
58846941--58847091	39	3.9	39	86	2	198	23	29	21	25	1.99
58846910--58847090	79	2.3	78	87	3	249	23	29	22	24	1.99
58849573--58849725	27	5.7	27	80	0	171	39	15	16	29	1.89
58869074--58869223	67	2.2	67	81	8	171	32	17	28	21	1.96
58869098--58869281	67	2.8	64	77	8	194	29	17	29	22	1.97
58870364--58870398	2	17.5	2	100	0	70	48	0	0	51	1.00
58877909--58878076	40	4.2	40	82	1	185	24	26	22	26	2.00
58885934--58886100	40	4.2	40	82	2	185	24	26	22	26	2.00
58890763--58890953	40	4.8	40	87	3	287	26	26	23	24	2.00
58890763--58890953	79	2.4	80	90	4	289	26	26	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58899234--58899362	39	3.3	39	91	0	222	22	30	20	26	1.99
58899181--58899361	78	2.3	77	86	3	238	23	29	22	23	1.99
58902224--58902414	40	4.8	40	88	0	292	26	26	22	25	2.00
58907230--58907332	28	3.7	28	75	7	93	25	15	32	27	1.96
58908414--58908769	48	7.4	48	97	0	649	31	28	6	34	1.82
58908414--58909297	96	9.0	96	81	9	991	31	27	6	34	1.82
58908414--58909297	144	6.0	144	84	7	1177	31	27	6	34	1.82
58908750--58908787	18	2.1	18	95	0	67	34	23	0	42	1.55
58908654--58908882	114	2.0	114	96	0	422	31	27	5	35	1.79
58908702--58908833	66	2.0	66	95	0	237	31	28	4	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335