genome.fa.s5.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  184  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55395534--55395570	13	2.8	13	91	0	56	24	16	16	43	1.87
55396241--55396271	2	15.5	2	100	0	62	51	0	0	48	1.00
55396450--55396498	15	3.3	14	77	11	53	36	0	6	57	1.24
55396441--55396499	30	1.9	31	86	13	86	37	1	6	54	1.37
55398271--55398304	14	2.4	14	90	5	50	73	5	0	20	1.04
55399864--55399913	21	2.4	21	86	0	64	22	12	32	34	1.90
55401330--55401498	92	1.8	91	96	1	311	28	28	21	21	1.98
55401325--55401494	46	3.7	45	81	11	220	28	28	21	21	1.99
55401327--55401514	46	4.1	46	73	18	151	28	28	20	21	1.98
55401917--55401976	30	2.0	30	90	0	93	30	25	8	36	1.85
55408272--55408397	46	2.7	46	95	0	216	29	26	22	21	1.99
55408274--55408416	46	3.1	45	87	4	137	28	27	21	21	1.99
55408819--55408878	30	2.0	30	90	0	93	30	25	8	36	1.85
55412696--55412762	35	1.9	35	90	0	107	46	22	5	25	1.74
55414751--55414899	80	1.9	80	81	2	183	22	30	24	22	1.99
55414792--55414899	40	2.7	38	85	8	128	21	29	25	23	1.99
55422858--55423005	80	1.9	80	80	4	174	22	30	24	22	1.99
55422898--55423005	40	2.7	38	85	8	128	21	29	25	23	1.99
55430834--55431000	40	4.2	40	82	2	185	25	27	21	25	1.99
55430834--55431000	80	2.1	79	83	7	205	25	27	21	25	1.99
55431826--55431871	17	2.5	19	74	22	53	34	23	17	23	1.96
55433164--55433370	30	6.9	30	84	8	178	48	14	17	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55433185--55433395	109	1.9	109	97	0	395	48	15	17	18	1.81
55433185--55433370	6	30.8	6	79	15	206	48	14	17	19	1.80
55433528--55433628	27	3.8	26	86	5	121	36	20	22	19	1.95
55433786--55433850	22	3.0	22	80	8	78	33	23	23	20	1.97
55434275--55434585	27	11.3	27	82	6	329	23	19	20	36	1.95
55434334--55434560	115	2.0	116	90	0	357	22	20	19	37	1.95
55434311--55434577	142	1.9	143	88	2	412	23	20	20	35	1.96
55434570--55434919	27	13.1	27	78	8	175	32	7	24	35	1.84
55434438--55434585	53	2.8	53	89	1	208	22	19	20	37	1.95
55434438--55434612	54	3.3	53	84	7	194	22	17	21	38	1.93
55434723--55434895	81	2.1	81	93	2	294	37	6	26	29	1.82
55434723--55434895	54	3.2	54	89	1	267	37	6	26	29	1.82
55434723--55434940	81	2.7	81	86	1	231	36	6	24	32	1.82
55435976--55436045	32	2.2	32	84	0	86	31	22	21	24	1.98
55436115--55436176	22	2.8	22	82	0	70	40	20	20	17	1.92
55439277--55439444	40	4.2	40	78	6	160	26	22	26	24	2.00
55440939--55441076	43	3.3	42	74	15	149	26	21	26	25	2.00
55440939--55441129	84	2.3	85	90	0	294	25	21	26	26	1.99
55440967--55441159	42	4.6	41	74	12	160	26	21	25	26	2.00
55442352--55442453	27	3.8	27	83	6	118	31	11	17	39	1.86
55442351--55442453	54	1.9	54	84	4	136	31	11	18	38	1.87
55447480--55447512	16	2.1	16	94	0	57	57	18	9	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55449985--55450058	28	2.6	28	85	4	87	22	31	17	28	1.97
55456917--55457006	24	3.8	24	80	2	110	26	22	14	36	1.92
55456917--55457032	24	5.0	23	77	5	99	26	22	14	36	1.93
55456917--55457032	47	2.5	47	85	2	144	26	22	14	36	1.93
55461622--55461804	39	4.6	39	86	0	231	23	30	21	24	1.99
55469036--55469217	39	4.6	39	86	1	231	23	30	21	24	1.99
55472629--55472678	20	2.5	19	80	6	55	52	0	26	22	1.48
55472650--55472691	20	2.0	21	86	4	59	47	2	28	21	1.63
55477330--55477406	24	3.2	24	80	12	88	23	25	16	33	1.96
55484224--55484261	18	2.1	18	100	0	76	23	21	18	36	1.95
55487543--55487801	46	5.6	46	78	8	215	23	28	18	28	1.98
55487543--55487801	140	1.9	138	86	3	367	23	28	18	28	1.98
55487542--55487801	92	2.8	90	80	11	244	24	28	18	28	1.98
55495812--55495840	14	2.0	15	93	6	51	27	0	20	51	1.47
55496338--55496368	15	2.1	15	93	0	53	19	0	25	54	1.44
55496918--55497139	45	4.9	45	85	0	291	22	15	27	34	1.94
55496930--55497168	90	2.7	90	86	2	324	22	16	28	32	1.96
55497550--55497598	24	2.0	24	100	0	98	28	0	16	55	1.42
55500264--55500386	49	2.6	46	83	10	133	25	18	27	28	1.98
55500264--55500386	47	2.6	48	82	12	146	25	18	27	28	1.98
55507649--55507731	27	3.1	27	82	0	103	24	16	20	38	1.93
55509449--55509575	44	2.9	43	79	10	132	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55509454--55509605	42	3.5	42	77	10	137	28	21	24	25	1.99
55514376--55514600	40	5.7	39	87	3	281	24	28	24	23	2.00
55516917--55516948	15	2.1	15	100	0	64	15	25	25	34	1.95
55517015--55517146	59	2.3	58	97	1	246	37	14	24	24	1.92
55516985--55517146	88	1.8	89	90	1	263	35	14	24	25	1.93
55517015--55517146	29	4.5	29	97	1	246	37	14	24	24	1.92
55520305--55520736	47	9.1	47	89	3	641	28	30	7	33	1.85
55520305--55520736	96	4.5	96	89	4	653	28	30	7	33	1.85
55520320--55520736	143	2.9	143	97	0	789	28	29	7	33	1.86
55532100--55532131	15	2.1	15	100	0	64	34	12	34	18	1.89
55534287--55534350	31	2.1	31	93	0	110	23	23	15	37	1.93
55534559--55534666	25	4.4	25	84	5	114	29	21	20	28	1.98
55534714--55534760	20	2.3	20	100	0	94	34	19	10	36	1.86
55541101--55541135	18	1.9	18	88	0	52	14	51	20	14	1.76
55542426--55542489	31	2.1	31	90	0	101	25	23	14	37	1.92
55542698--55542780	25	3.4	25	86	8	109	33	20	16	28	1.95
55542720--55542805	25	3.4	25	85	3	111	31	20	19	27	1.97
55542686--55542805	50	2.4	47	78	12	125	30	21	20	27	1.98
55542853--55542899	20	2.3	20	100	0	94	34	19	10	36	1.86
55545942--55545982	19	2.2	19	86	0	55	46	12	0	41	1.41
55547559--55547585	13	2.1	13	100	0	54	44	7	7	40	1.60
55552263--55552308	10	4.2	11	78	16	51	36	6	2	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55553057--55553120	30	2.2	29	81	13	69	32	4	9	53	1.54
55554499--55554575	31	2.5	31	86	0	109	20	14	12	51	1.75
55555780--55555827	23	2.0	25	88	8	73	39	0	0	60	0.97
55560395--55560536	31	4.6	31	75	9	114	30	12	13	42	1.81
55562342--55562395	28	1.9	28	100	0	108	35	14	7	42	1.74
55562610--55562638	13	2.1	14	93	6	51	34	0	0	65	0.93
55562964--55562990	13	2.1	13	100	0	54	25	14	29	29	1.95
55563437--55563483	16	2.9	16	84	9	51	55	0	2	42	1.12
55563600--55563653	16	3.4	16	71	0	54	31	22	3	42	1.71
55563891--55563922	10	3.0	11	90	9	57	90	0	9	0	0.45
55564059--55564088	13	2.3	13	94	0	51	90	0	10	0	0.47
55567428--55567586	39	4.1	39	91	0	257	24	30	23	22	1.99
55570882--55570929	2	24.0	2	100	0	96	50	0	0	50	1.00
55571477--55571520	22	1.9	24	86	9	65	65	6	0	27	1.17
55571868--55571911	20	2.1	21	88	12	65	54	0	2	43	1.12
55574457--55574598	40	3.5	40	83	1	124	27	23	26	22	1.99
55574495--55574624	40	3.2	40	83	2	172	23	22	28	26	1.99
55576337--55576393	29	2.0	29	92	0	96	35	19	14	31	1.91
55580105--55580147	2	21.0	2	90	4	68	46	0	2	51	1.13
55581999--55582079	40	2.0	40	95	0	144	30	18	6	44	1.74
55590214--55590335	49	2.5	50	84	6	144	28	21	29	20	1.98
55596801--55596852	26	2.0	26	100	0	104	53	15	11	19	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55597249--55597306	30	1.9	30	89	0	89	32	12	25	29	1.92
55599181--55599248	30	2.3	30	89	0	100	19	41	22	17	1.91
55603743--55603842	47	2.1	47	83	3	121	32	9	31	28	1.88
55603812--55603947	50	2.7	50	97	0	254	36	5	25	31	1.80
55604097--55604205	37	2.9	37	93	2	175	22	20	32	25	1.98
55607422--55607548	40	3.2	40	87	5	170	23	29	22	23	1.99
55615045--55615267	40	5.6	40	89	3	308	23	24	27	24	2.00
55618215--55618369	42	3.7	42	86	3	204	29	14	24	31	1.94
55618215--55618369	85	1.8	84	84	6	215	29	14	24	31	1.94
55622709--55622762	26	2.1	26	100	0	108	40	0	27	31	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335