Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  312  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92242378--92242720
182
1.9
179
84
5
458
32
11
20
35
1.89
92244823--92244864
21
2.0
21
100
0
84
14
23
28
33
1.94
92244960--92245135
46
3.8
46
76
10
169
22
21
27
28
1.99
92244957--92245128
93
1.8
93
88
0
263
23
21
27
27
1.99
92247709--92247761
17
3.0
17
78
15
63
60
3
1
33
1.26
92247709--92247778
34
2.0
35
86
10
99
64
4
1
30
1.21
92248429--92248516
41
2.2
40
95
2
158
61
5
4
28
1.39
92256736--92256928
98
2.0
99
86
1
271
30
14
22
32
1.94
92261433--92261460
2
14.0
2
100
0
56
50
0
0
50
1.00
92263174--92263320
74
2.0
74
97
0
276
34
23
8
33
1.86
92263927--92264230
46
7.0
45
87
7
366
21
24
15
38
1.92
92264105--92264218
38
3.0
38
100
0
228
21
26
18
34
1.96
92266366--92266417
11
4.7
11
76
9
52
63
3
0
32
1.12
92276577--92276607
16
1.9
16
93
0
53
58
0
0
41
0.98
92276943--92277016
35
2.1
35
87
5
105
17
17
16
48
1.81
92277022--92277214
37
5.3
36
64
17
85
15
19
19
45
1.86
92276983--92277212
73
3.2
73
88
2
336
16
19
20
44
1.87
92277055--92277173
36
3.3
36
69
23
104
17
18
21
42
1.90
92277601--92277640
20
2.0
20
85
0
53
65
2
7
25
1.32
92277680--92277734
26
2.1
26
89
0
83
61
5
1
30
1.29
92277713--92277758
17
2.6
17
89
3
65
67
4
2
26
1.21
92277713--92277758
9
5.2
9
76
12
51
67
4
2
26
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92277729--92277777
18
2.7
18
84
12
57
65
0
6
28
1.16
92277900--92278409
145
3.5
145
95
1
898
27
18
22
31
1.97
92287033--92287225
98
2.0
99
84
1
253
30
13
22
33
1.93
92293453--92293503
25
2.0
25
96
0
93
45
15
9
29
1.79
92297448--92297483
11
3.3
11
88
0
54
69
11
0
19
1.18
92298571--92298621
21
2.5
21
76
20
54
37
0
1
60
1.08
92301335--92301394
31
1.9
31
100
0
120
40
13
10
36
1.78
92303150--92303187
2
19.0
2
100
0
76
50
50
0
0
1.00
92304200--92304366
84
2.0
84
85
2
228
35
10
13
40
1.79
92308606--92308648
21
2.0
21
82
8
52
37
2
4
55
1.33
92309433--92309463
16
1.9
16
93
0
53
74
9
6
9
1.23
92320714--92320739
2
13.0
2
100
0
52
50
0
0
50
1.00
92322495--92322680
43
4.3
42
86
2
255
26
29
19
24
1.99
92322840--92322887
20
2.4
21
82
10
64
68
4
2
25
1.18
92322852--92322911
31
1.9
31
86
6
86
70
1
3
25
1.12
92325238--92325423
40
4.7
40
81
5
182
26
21
26
25
2.00
92333362--92333547
40
4.7
40
83
5
191
26
21
25
25
1.99
92336196--92336284
44
2.0
44
97
0
169
46
14
13
25
1.81
92339039--92339072
6
5.7
6
86
13
52
44
0
55
0
0.99
92339312--92339359
20
2.5
20
83
6
64
20
6
6
66
1.36
92339943--92340022
15
5.3
15
70
8
63
16
0
33
50
1.45
92340085--92340227
40
3.6
41
87
4
195
20
20
20
38
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92340657--92340706
16
3.1
16
79
2
55
58
0
0
42
0.98
92345229--92345267
19
2.1
19
85
0
51
2
23
0
74
0.94
92354046--92354092
24
1.9
25
86
4
69
38
2
4
55
1.31
92354033--92354103
25
2.7
27
77
14
78
35
4
4
56
1.38
92358312--92358341
9
3.2
9
90
9
51
76
0
0
23
0.78
92358313--92358338
10
2.6
10
100
0
52
84
0
0
15
0.62
92359028--92359087
29
2.1
29
93
0
102
43
6
28
21
1.78
92366473--92366536
28
2.2
31
83
8
80
45
1
4
48
1.32
92375639--92375678
19
2.0
21
85
9
57
60
10
5
25
1.49
92383932--92384141
30
6.8
30
76
10
201
26
48
3
21
1.67
92383952--92384035
18
5.1
18
69
19
83
29
50
4
15
1.65
92383932--92384068
47
2.9
47
97
2
256
27
48
4
19
1.67
92384017--92384141
60
2.1
60
96
0
232
25
48
3
22
1.65
92384707--92384773
25
2.7
25
79
2
73
37
2
1
58
1.23
92384653--92384784
58
2.3
58
82
8
148
36
3
3
56
1.33
92384707--92384784
23
4.1
18
69
27
54
37
2
1
58
1.20
92384698--92384808
58
1.9
58
85
5
152
34
5
3
56
1.39
92384711--92384808
29
3.3
29
76
6
81
33
5
3
58
1.36
92384740--92384805
34
2.0
33
84
3
87
34
4
3
57
1.34
92384653--92384823
56
3.0
58
80
8
158
35
5
4
55
1.41
92384794--92384847
25
2.3
25
84
9
69
33
7
7
51
1.58
92385010--92385057
16
3.1
15
90
6
69
31
2
2
64
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92385010--92385061
8
6.5
8
82
8
61
30
1
1
65
1.14
92391633--92391851
77
2.9
76
84
4
275
30
16
21
31
1.95
92391929--92391961
14
2.4
14
90
10
50
21
12
6
60
1.53
92391830--92392305
92
5.3
90
79
6
396
27
16
18
38
1.91
92391873--92392372
87
5.6
87
79
7
377
28
16
19
36
1.93
92392922--92393044
30
4.1
30
94
0
219
24
46
3
26
1.68
92392921--92393086
60
3.0
56
82
12
218
25
47
3
24
1.66
92393017--92393064
20
2.2
22
82
17
73
22
50
0
27
1.50
92393024--92393064
20
2.0
20
100
0
82
24
48
0
26
1.51
92393575--92393722
23
6.6
21
70
17
77
36
4
2
56
1.32
92393650--92393728
2
41.5
2
74
14
60
39
2
1
56
1.21
92393654--92393731
25
3.0
26
74
7
79
37
2
1
58
1.20
92393678--92393757
26
2.9
28
76
12
76
31
6
3
58
1.40
92393650--92393733
14
6.1
14
73
15
68
38
2
1
58
1.19
92393743--92393796
25
2.3
25
84
9
69
33
7
7
51
1.58
92393961--92394008
16
3.1
15
90
6
69
31
2
2
64
1.16
92393961--92394012
8
6.5
8
82
8
61
30
1
1
65
1.14
92394923--92394981
21
2.8
22
73
17
54
49
3
8
38
1.50
92395186--92395276
2
46.5
2
72
12
64
50
3
5
40
1.42
92394708--92395257
275
2.0
276
96
2
1027
52
5
12
28
1.62
92397100--92397209
44
2.5
44
82
2
123
17
23
21
37
1.94
92397139--92397507
87
4.3
87
78
5
235
20
20
21
37
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92397278--92397507
86
2.7
85
83
5
275
20
21
22
36
1.96
92412548--92412595
18
2.5
20
80
10
64
33
6
2
58
1.35
92412563--92412625
28
2.1
31
82
8
78
38
3
3
55
1.32
92413923--92413974
24
2.2
24
92
0
86
51
7
3
36
1.49
92430002--92430040
3
13.0
3
100
0
78
66
0
0
33
0.92
92430698--92430730
12
2.8
12
90
4
50
87
3
9
0
0.63
92431738--92431936
110
1.8
107
94
3
353
34
19
16
30
1.93
92431737--92431936
56
3.7
54
93
3
348
34
19
16
30
1.93
92431965--92432288
75
4.1
76
71
18
241
33
20
16
29
1.95
92432109--92432137
14
2.1
14
100
0
58
65
6
13
13
1.45
92431900--92432950
163
6.3
162
73
14
754
35
20
16
27
1.94
92432037--92432213
88
2.0
87
85
5
239
37
19
16
27
1.93
92432401--92432620
54
4.0
54
95
1
377
39
17
15
28
1.90
92431676--92432764
330
3.3
327
74
14
1068
35
19
16
28
1.94
92432600--92432634
14
2.5
14
90
0
52
65
2
11
20
1.37
92432625--92432765
74
1.9
75
89
2
221
29
22
17
29
1.97
92432069--92433112
495
2.1
495
96
1
1925
37
20
15
26
1.93
92432896--92433369
54
8.7
54
93
1
795
37
17
14
30
1.90
92433381--92433540
72
2.2
73
92
3
261
33
16
16
33
1.92
92440883--92440912
3
10.0
3
100
0
60
66
0
0
33
0.92
92440957--92441028
37
1.9
37
83
10
94
58
6
5
29
1.47
92442451--92442490
20
2.1
20
86
9
57
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92445442--92445488
17
2.7
17
81
15
60
34
2
0
63
1.06
92449761--92449802
19
2.2
19
86
4
57
26
19
7
47
1.74
92457739--92457904
66
2.5
66
82
5
203
32
18
10
39
1.84
92458259--92458502
43
5.7
42
69
10
179
34
23
23
18
1.96
92458302--92458457
44
3.6
44
75
6
183
35
23
25
16
1.95
92458253--92458499
86
2.9
87
90
1
388
33
23
23
19
1.97
92460182--92460228
17
2.7
17
81
15
60
34
2
0
63
1.06
92462262--92462302
20
2.1
19
86
4
55
26
14
0
58
1.37
92464107--92464148
21
2.0
22
86
13
61
35
2
26
35
1.70
92464321--92464378
30
1.9
31
89
3
91
44
3
24
27
1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335