genome.fa.s5.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  164  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48295502--48295726	83	2.8	82	88	6	336	26	28	22	23	1.99
48303021--48303150	40	3.3	39	76	8	136	23	27	23	24	2.00
48303037--48303188	40	3.8	40	78	6	148	22	26	23	27	1.99
48303037--48303186	80	1.9	80	83	8	198	22	26	24	27	1.99
48306805--48307035	40	5.7	40	87	8	317	27	27	22	22	1.99
48306805--48307035	83	2.9	82	87	8	341	27	27	22	22	1.99
48311195--48311232	4	9.8	4	82	5	51	76	5	0	18	0.97
48311290--48311324	3	11.7	3	87	0	52	62	0	5	31	1.18
48312888--48313409	44	11.5	44	73	10	298	29	21	17	31	1.96
48313201--48313409	45	4.5	44	71	14	118	30	23	15	30	1.95
48317829--48318053	40	5.6	40	86	6	312	23	23	27	25	2.00
48317829--48318051	83	2.8	82	88	6	332	23	23	26	26	2.00
48319952--48319986	3	11.7	3	87	0	52	62	0	5	31	1.18
48321547--48322068	44	11.4	45	73	9	317	29	21	17	31	1.96
48329509--48329552	22	2.0	22	100	0	88	27	22	9	40	1.84
48331183--48331208	5	5.2	5	100	0	52	80	0	0	19	0.71
48343810--48344292	87	5.6	85	79	8	344	43	9	14	32	1.77
48343880--48344292	174	2.4	173	80	6	442	42	9	14	33	1.78
48344398--48344455	25	2.3	25	100	0	116	44	6	0	48	1.29
48344549--48344592	22	2.0	23	86	4	63	65	2	0	31	1.05
48344548--48344601	22	2.6	21	75	11	58	66	1	0	31	1.02
48346117--48346150	17	2.0	17	88	11	52	52	14	2	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48348073--48348101	14	2.1	14	100	0	58	20	6	13	58	1.58
48354701--48354813	34	3.3	34	81	0	127	34	20	7	38	1.80
48361884--48361912	2	14.5	2	100	0	58	48	0	0	51	1.00
48361905--48362015	34	3.3	34	87	0	159	36	21	6	36	1.79
48364484--48364570	42	2.1	41	85	6	113	24	18	31	26	1.98
48364484--48364607	41	3.0	41	81	5	99	24	18	29	27	1.98
48364656--48364686	16	1.9	16	93	0	53	54	12	12	19	1.70
48375238--48375294	21	2.7	21	73	10	62	29	28	0	42	1.56
48375836--48375864	15	1.9	15	100	0	58	13	20	3	62	1.46
48383089--48383256	46	3.6	46	78	16	202	28	30	20	19	1.97
48383093--48383263	93	1.8	93	94	0	306	27	30	21	19	1.98
48390927--48390960	9	3.9	9	96	3	61	64	23	0	11	1.26
48390927--48390960	17	1.9	17	94	5	59	64	23	0	11	1.26
48393459--48393554	40	2.4	40	81	10	115	32	14	23	29	1.94
48394263--48394291	12	2.4	12	100	0	58	13	6	27	51	1.66
48394900--48394936	14	2.5	16	83	16	53	27	0	24	48	1.51
48398412--48398491	38	2.1	38	86	4	108	21	21	27	30	1.98
48398463--48398651	43	4.4	43	88	1	274	13	22	33	30	1.92
48398966--48399075	45	2.5	42	83	11	132	23	22	26	27	2.00
48407597--48407639	19	2.3	19	95	0	77	32	20	4	41	1.73
48407807--48407921	41	2.7	42	74	11	110	27	22	17	32	1.96
48414547--48414639	41	2.2	42	83	7	109	29	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48426310--48426458	43	3.5	43	81	9	155	31	24	16	27	1.96
48430742--48430820	32	2.5	32	82	8	83	41	10	12	35	1.77
48431245--48431309	19	3.4	19	75	14	62	61	3	1	33	1.21
48431245--48431411	10	17.7	9	70	14	88	60	4	2	32	1.30
48431263--48431391	28	4.6	28	73	16	97	59	5	2	32	1.33
48431765--48431997	10	24.8	9	69	14	109	31	2	5	60	1.34
48432158--48432335	9	19.3	9	71	19	102	34	0	3	61	1.19
48432597--48432644	22	2.2	22	85	7	62	72	0	2	25	0.95
48432740--48432784	15	2.9	15	86	3	54	31	2	0	66	1.04
48438621--48438745	63	2.0	63	100	0	250	50	9	11	28	1.69
48443606--48443685	26	3.1	26	96	0	142	22	27	11	38	1.88
48447953--48447994	20	2.2	19	87	12	59	16	21	4	57	1.58
48450260--48450371	27	4.2	26	85	7	143	37	23	23	16	1.93
48450260--48450371	54	2.1	54	88	3	163	37	23	23	16	1.93
48451781--48451831	24	2.1	24	88	0	75	23	37	1	37	1.66
48452912--48452951	21	1.9	21	94	0	71	42	22	10	25	1.84
48458967--48459410	95	4.7	95	80	3	428	31	18	12	37	1.88
48458967--48459380	189	2.2	189	81	2	497	31	19	12	36	1.89
48458967--48459410	190	2.3	189	80	3	496	31	18	12	37	1.88
48460443--48460495	25	2.1	25	82	10	63	24	24	16	33	1.96
48463113--48463167	14	3.9	14	90	4	92	54	1	7	36	1.39
48463111--48463168	29	2.0	29	100	0	116	51	3	6	37	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48465952--48465982	14	2.2	14	94	0	53	38	19	9	32	1.84
48470102--48470145	23	1.9	23	86	9	63	20	4	47	27	1.69
48476882--48476962	31	2.6	31	86	0	117	22	32	34	11	1.89
48477933--48478058	55	2.3	55	79	6	130	24	29	23	23	1.99
48479348--48479390	21	2.0	21	90	0	68	18	18	23	39	1.92
48480121--48480313	100	1.9	100	94	0	341	27	18	24	29	1.98
48480126--48480313	49	3.8	49	85	2	259	27	18	25	29	1.98
48485288--48485458	49	3.5	49	82	1	216	24	14	28	32	1.95
48485281--48485473	99	1.9	99	88	0	287	24	15	28	31	1.96
48486736--48487029	94	3.2	90	80	6	329	24	27	18	29	1.98
48486780--48487032	47	5.5	46	74	7	217	24	28	19	28	1.99
48486737--48487032	44	6.5	44	71	11	177	24	27	18	29	1.98
48486736--48487032	90	3.2	90	80	6	353	24	27	18	29	1.98
48487709--48487733	12	2.1	12	100	0	50	60	16	8	16	1.58
48488307--48488342	18	1.9	19	88	5	56	33	5	19	41	1.75
48490596--48490620	6	4.2	6	100	0	50	68	16	0	16	1.22
48494086--48494176	34	2.6	35	79	8	98	20	21	23	34	1.97
48494086--48494266	35	5.1	34	73	9	121	23	21	23	32	1.98
48495798--48495850	15	3.3	16	82	12	56	39	1	0	58	1.09
48496248--48496321	15	4.9	15	75	5	51	2	18	0	78	0.87
48496252--48496324	37	1.9	38	86	8	105	2	20	0	76	0.90
48496248--48496329	42	1.9	43	82	2	103	2	19	0	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48496646--48496735	38	2.4	37	77	17	105	40	0	1	58	1.05
48496770--48496794	13	1.9	13	100	0	50	44	0	0	56	0.99
48496784--48496823	19	2.2	19	90	4	64	40	0	0	60	0.97
48496805--48496846	13	2.9	14	80	13	50	54	0	0	45	0.99
48496809--48496845	16	2.3	16	86	13	58	59	0	0	40	0.97
48497172--48497227	27	2.1	27	86	6	78	53	3	3	39	1.36
48497914--48497963	26	2.0	24	85	14	66	62	8	0	30	1.24
48497934--48497989	22	2.7	21	78	8	60	71	5	0	23	1.06
48504231--48504312	36	2.3	36	84	0	110	39	15	9	35	1.81
48504230--48504312	18	4.6	18	83	0	94	39	15	9	34	1.80
48504456--48504556	44	2.3	44	83	6	116	33	22	22	20	1.97
48506552--48506735	40	4.6	39	75	6	138	26	23	27	22	2.00
48506592--48506780	80	2.4	81	77	4	186	23	24	29	22	1.99
48514674--48514857	40	4.6	39	75	6	138	26	23	27	22	2.00
48514714--48514902	80	2.4	81	77	4	186	23	24	29	22	1.99
48516650--48516694	12	3.9	11	91	8	72	26	17	0	55	1.42
48516650--48516694	23	2.0	23	91	8	74	26	17	0	55	1.42
48529340--48529394	25	2.2	25	86	0	74	45	3	27	23	1.69
48529507--48529600	40	2.3	43	83	9	115	22	19	17	41	1.90
48535249--48535280	16	2.0	16	100	0	64	43	12	6	37	1.68
48538539--48538706	48	3.5	48	88	0	246	27	15	29	27	1.96
48538533--48538706	96	1.8	96	92	0	294	27	16	29	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48543791--48543962	93	1.8	93	93	0	299	28	29	20	21	1.98
48543784--48543959	46	3.8	46	76	12	198	29	28	20	21	1.98
48554187--48554653	231	2.0	231	92	0	781	29	33	17	19	1.95
48554673--48554721	23	2.1	25	85	11	68	8	26	4	61	1.42
48557340--48557364	7	3.6	7	100	0	50	44	40	0	16	1.47
48556780--48560404	610	5.9	610	99	0	7124	31	17	13	37	1.90
48557950--48557974	7	3.6	7	100	0	50	44	40	0	16	1.47
48558560--48558584	7	3.6	7	100	0	50	44	40	0	16	1.47
48559170--48559194	7	3.6	7	100	0	50	44	40	0	16	1.47
48559780--48559804	7	3.6	7	100	0	50	44	40	0	16	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335