genome.fa.s5.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  170  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50477854--50477892	20	2.0	20	89	0	60	0	20	0	79	0.73
50478438--50478556	40	3.1	40	67	18	126	28	8	32	30	1.87
50478408--50478520	34	3.1	34	67	18	102	27	7	30	33	1.86
50478408--50478556	74	2.0	74	100	0	298	26	8	32	32	1.86
50479216--50479285	25	2.8	25	86	0	95	25	22	24	27	2.00
50480658--50480683	12	2.2	12	100	0	52	23	7	7	61	1.49
50485293--50485385	27	3.4	27	83	4	107	37	18	18	25	1.93
50486120--50486147	2	14.0	2	100	0	56	50	0	0	50	1.00
50494080--50494143	31	2.1	31	90	0	101	23	25	15	35	1.94
50494334--50494522	24	8.0	24	91	4	287	28	21	21	28	1.99
50494355--50494522	47	3.6	47	91	3	284	29	20	21	28	1.98
50494355--50494521	23	7.1	23	94	2	271	29	20	21	28	1.98
50494573--50494630	20	2.9	20	94	0	98	31	22	12	34	1.91
50497323--50497496	47	3.7	47	73	10	160	22	18	29	29	1.97
50497327--50497503	93	1.9	93	89	2	275	22	18	28	31	1.97
50502934--50503106	46	3.7	46	71	15	149	21	19	28	30	1.98
50502927--50503099	93	1.9	93	88	2	267	21	19	28	29	1.98
50509477--50509712	49	4.8	50	82	2	262	25	16	27	30	1.97
50509477--50509699	101	2.2	97	84	3	266	25	16	27	30	1.97
50516110--50516280	46	3.7	45	75	18	147	30	20	26	22	1.98
50524111--50524203	20	4.7	20	79	2	107	43	20	27	8	1.81
50524103--50524203	39	2.5	40	77	6	107	42	19	27	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50529706--50529730	12	2.1	12	100	0	50	12	8	8	72	1.29
50536471--50536531	24	2.5	24	84	5	70	19	18	29	32	1.95
50545046--50545148	27	3.8	27	76	0	80	39	17	19	23	1.92
50545503--50545701	27	7.4	27	76	9	165	30	11	18	39	1.86
50545515--50545697	54	3.4	54	80	1	215	30	10	19	39	1.85
50545517--50545697	81	2.2	81	83	3	213	29	10	19	40	1.85
50547038--50547104	24	2.8	24	73	8	73	26	34	2	35	1.72
50548932--50549005	38	1.9	38	94	0	130	33	16	17	32	1.92
50554608--50554641	15	2.3	15	94	0	59	44	0	14	41	1.45
50557160--50557202	18	2.4	18	84	0	59	37	11	9	41	1.74
50559951--50559984	15	2.3	15	94	0	59	44	0	14	41	1.45
50573548--50573713	40	4.2	40	90	4	239	26	27	22	23	1.99
50575972--50576103	29	4.6	29	83	1	149	25	32	16	25	1.96
50579122--50579337	38	5.2	38	71	18	171	30	24	15	30	1.95
50579167--50579377	47	4.7	47	78	10	251	30	23	15	30	1.95
50579129--50579335	85	2.4	85	95	0	360	29	24	15	29	1.96
50579252--50579377	48	2.7	47	84	1	162	30	23	15	30	1.95
50588633--50588742	25	4.5	24	76	12	107	32	21	22	22	1.98
50588633--50588742	50	2.2	49	85	4	141	32	21	22	22	1.98
50602261--50602411	40	3.8	40	77	13	134	27	23	26	22	2.00
50602298--50602427	40	3.2	40	77	4	138	24	23	27	23	2.00
50607098--50607186	28	3.3	27	83	7	117	33	21	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50610690--50610801	56	2.0	56	100	0	224	33	8	21	35	1.85
50614143--50614330	40	4.7	40	87	3	281	27	27	20	24	1.99
50614108--50614330	119	1.9	119	85	5	308	26	26	20	26	1.99
50634020--50634057	20	2.0	20	89	5	60	23	10	26	39	1.87
50647066--50647130	17	3.8	17	93	2	112	13	23	40	23	1.90
50659856--50660013	40	4.0	40	79	4	151	26	24	26	22	2.00
50659856--50660043	80	2.3	80	79	12	206	26	23	27	22	2.00
50667922--50668079	40	4.0	40	79	4	151	26	24	26	22	2.00
50667922--50668109	80	2.3	80	79	12	206	26	23	27	22	2.00
50669821--50669845	12	2.1	12	100	0	50	8	16	52	24	1.70
50674555--50674814	131	2.0	130	90	0	412	26	16	19	37	1.93
50674559--50674912	131	2.7	130	83	4	335	27	16	19	37	1.93
50681155--50681197	16	2.7	16	85	0	59	48	16	23	11	1.78
50681406--50681501	29	3.3	29	89	1	140	26	12	30	31	1.93
50682203--50682260	26	2.2	26	100	0	116	32	3	25	37	1.73
50684037--50684322	136	2.1	137	98	0	547	24	19	25	31	1.98
50688001--50688058	26	2.2	26	100	0	116	32	3	25	37	1.73
50689828--50690114	137	2.1	137	98	0	556	24	19	25	31	1.98
50693789--50693846	26	2.2	26	100	0	116	32	3	25	37	1.73
50695614--50695900	137	2.1	137	98	0	556	24	19	25	31	1.98
50703709--50703746	19	2.0	20	85	15	53	39	23	0	36	1.55
50703976--50704145	93	1.8	93	89	2	270	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50703976--50704142	46	3.6	45	76	12	169	29	28	19	22	1.98
50704020--50704161	46	3.1	45	72	18	123	28	27	19	23	1.99
50711285--50711322	19	2.0	20	85	15	53	39	23	0	36	1.55
50711550--50711719	93	1.8	92	93	1	295	28	28	20	21	1.98
50711545--50711716	45	3.7	46	79	11	208	29	27	20	22	1.98
50712138--50712197	30	2.0	30	86	0	84	33	25	5	36	1.78
50713260--50713338	39	2.0	39	100	0	158	31	12	10	45	1.75
50717661--50717833	46	3.7	46	76	10	172	22	20	26	30	1.98
50717658--50717828	93	1.8	93	88	0	261	22	20	27	29	1.98
50719853--50719888	18	2.0	18	94	0	63	52	11	13	22	1.72
50719884--50719966	40	2.1	40	97	0	157	49	20	4	25	1.68
50720092--50720212	50	2.4	52	80	8	140	38	14	14	33	1.85
50731070--50731102	6	5.7	6	89	7	50	84	0	3	12	0.72
50731070--50731102	11	2.8	12	90	4	50	84	0	3	12	0.72
50735273--50735499	48	4.8	48	75	7	196	25	20	24	29	1.99
50740626--50740861	81	2.9	81	87	2	287	28	23	10	37	1.88
50740657--50740861	27	7.6	27	86	2	268	28	22	10	39	1.87
50740657--50740890	81	2.9	81	85	1	254	28	21	11	38	1.88
50742180--50742236	9	5.9	9	73	15	51	35	8	21	35	1.84
50742178--50742240	20	3.2	20	95	0	117	36	12	19	31	1.89
50742295--50742458	24	7.0	24	86	6	212	29	21	21	26	1.99
50742296--50742459	47	3.5	46	86	7	208	29	21	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50742295--50742458	71	2.3	70	89	5	242	29	21	21	26	1.99
50742652--50742715	31	2.1	31	90	0	101	35	15	23	25	1.94
50745521--50745756	81	2.9	81	87	2	296	28	24	10	36	1.88
50745552--50745756	27	7.6	27	87	2	286	27	22	10	38	1.88
50745552--50745785	81	2.9	81	85	1	254	28	22	11	38	1.89
50745749--50745820	27	2.7	27	77	0	81	40	22	8	29	1.83
50746300--50746357	29	2.0	29	96	0	107	36	13	25	24	1.92
50747104--50747160	9	5.9	9	73	15	51	35	8	21	35	1.84
50747102--50747164	20	3.2	20	95	0	117	36	12	19	31	1.89
50747219--50747408	24	8.0	24	90	3	278	28	23	21	26	1.99
50747219--50747387	47	3.6	47	93	1	293	29	23	20	26	1.99
50747218--50747408	71	2.7	71	88	5	278	29	23	21	26	1.99
50747601--50747664	31	2.1	31	90	0	101	35	15	23	25	1.94
50756538--50756668	29	4.6	29	82	3	140	25	32	16	24	1.96
50764413--50764543	29	4.6	29	82	3	140	25	32	16	24	1.96
50770762--50770876	40	2.9	40	80	5	117	26	27	20	24	1.99
50776461--50776571	40	2.8	40	83	2	125	26	28	21	23	1.99
50779183--50779304	46	2.6	45	81	8	138	25	27	18	27	1.98
50804276--50804315	17	2.3	18	86	4	55	10	37	30	22	1.87
50805721--50805906	40	4.7	40	85	5	164	25	26	22	25	2.00
50805721--50805904	80	2.3	80	80	10	216	25	27	21	25	2.00
50827277--50827541	44	5.8	47	72	18	188	24	31	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50827277--50827491	87	2.4	89	87	5	290	24	32	16	26	1.96
50827277--50827533	87	2.8	92	83	7	262	24	31	17	27	1.97
50831964--50832072	57	1.9	57	83	3	139	36	21	18	23	1.95
50840167--50840212	3	15.3	3	95	0	83	30	2	0	67	1.03
50840343--50840418	5	14.8	5	72	20	59	73	3	19	2	1.11
50840343--50840416	22	3.3	21	73	21	62	72	4	20	2	1.13
50842302--50842383	13	5.7	13	71	20	56	13	41	37	7	1.72
50842313--50842368	17	3.6	16	76	18	64	12	41	37	8	1.74
50842302--50842386	30	2.8	30	92	0	134	14	40	37	8	1.75
50848343--50848383	3	13.7	3	100	0	82	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335