Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  116  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35518765--35518837
22
3.2
23
70
20
71
46
12
5
35
1.65
35525047--35525269
43
5.2
43
78
5
202
34
22
17
25
1.95
35525047--35525258
86
2.5
85
85
1
282
35
22
16
25
1.95
35525407--35525582
43
4.1
43
74
9
155
32
25
17
25
1.96
35525407--35525582
84
2.1
85
82
4
212
32
25
17
25
1.96
35525893--35525957
26
2.8
23
77
20
64
63
1
3
32
1.19
35526177--35526235
24
2.5
24
70
10
57
32
3
5
59
1.36
35527415--35527503
43
2.1
43
100
0
178
35
13
19
31
1.90
35530143--35530326
77
2.4
77
76
7
176
44
9
9
36
1.70
35532479--35532528
11
4.9
10
78
11
57
32
0
2
66
1.03
35534514--35534556
17
2.5
17
81
7
52
20
4
4
69
1.25
35535578--35535638
21
2.8
22
87
9
90
32
27
24
14
1.95
35538459--35538602
54
2.7
54
93
2
236
18
25
22
34
1.96
35538462--35538602
27
5.2
27
82
10
164
18
24
22
34
1.96
35538462--35538620
27
5.9
27
74
19
136
19
25
21
33
1.97
35538462--35538620
81
2.0
80
81
8
189
19
25
21
33
1.97
35539848--35539894
3
16.0
3
95
4
87
65
0
0
34
0.93
35540020--35540125
35
3.1
34
89
5
128
48
5
0
46
1.26
35540037--35540102
19
3.7
18
68
13
55
46
6
0
46
1.27
35540052--35540134
35
2.4
35
97
0
157
45
7
0
46
1.30
35543994--35544628
319
2.0
317
93
0
1081
29
15
22
31
1.95
35545349--35545386
16
2.2
17
86
9
51
65
2
10
21
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35545630--35545669
5
7.6
5
83
10
53
20
0
0
80
0.72
35545634--35545670
17
2.2
17
95
0
65
18
0
0
81
0.70
35547330--35547354
13
1.9
13
100
0
50
8
16
32
44
1.76
35549075--35549147
21
3.4
21
82
3
74
41
10
17
30
1.84
35553516--35553554
20
2.0
20
84
0
51
71
5
0
23
1.05
35553576--35553650
36
2.1
34
79
11
80
64
2
1
32
1.16
35553593--35553625
15
2.1
16
88
5
50
66
0
0
33
0.92
35553587--35553650
8
7.5
8
76
22
51
64
1
1
32
1.13
35553632--35553755
19
6.6
19
70
16
64
64
1
3
30
1.19
35553602--35553658
27
2.1
27
80
6
62
63
0
1
35
1.05
35553676--35553756
9
8.8
9
76
14
67
67
1
1
29
1.06
35553651--35553762
54
2.1
55
81
11
133
63
2
3
30
1.25
35553732--35553756
11
2.3
11
100
0
50
76
0
0
24
0.80
35553676--35553762
20
4.7
18
72
18
63
66
2
1
29
1.11
35563194--35563244
15
3.3
15
75
10
50
35
0
3
60
1.15
35563704--35563797
47
2.0
47
100
0
188
34
14
21
29
1.93
35565958--35565996
17
2.4
16
87
8
53
30
0
7
61
1.24
35576311--35576382
36
2.0
36
88
0
108
36
16
2
44
1.63
35576667--35576725
31
1.9
31
85
0
82
35
10
8
45
1.68
35583189--35583223
16
2.1
16
89
5
52
62
2
2
31
1.24
35583216--35583277
22
2.8
21
72
20
54
54
1
3
40
1.26
35586233--35586415
99
1.8
99
100
0
366
33
24
16
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35590605--35590650
3
15.3
3
100
0
92
32
0
0
67
0.91
35590972--35590996
5
5.0
5
100
0
50
80
0
20
0
0.72
35594324--35594383
31
1.9
31
89
0
93
26
21
16
35
1.95
35594581--35594750
25
7.0
24
86
9
220
26
24
20
28
1.99
35594808--35594864
9
5.9
9
73
15
51
35
21
8
35
1.84
35594796--35594866
20
3.5
20
94
0
124
32
21
11
35
1.89
35594801--35594855
11
5.4
11
70
16
55
30
20
12
36
1.90
35596218--35596270
27
2.0
27
84
0
70
35
13
15
35
1.86
35596227--35596457
27
8.5
27
78
8
105
32
9
19
38
1.83
35596318--35596457
54
2.6
54
85
4
192
30
7
22
39
1.82
35596436--35596646
27
7.8
27
84
2
253
38
7
24
29
1.83
35596409--35596630
54
4.1
53
79
6
173
39
7
22
31
1.81
35596316--35596468
81
1.9
81
80
0
180
32
7
21
37
1.82
35596424--35596659
108
2.2
108
85
1
321
37
7
23
31
1.82
35596436--35596639
54
3.8
54
86
0
282
39
7
22
29
1.82
35596652--35596741
27
3.3
27
83
9
112
32
10
16
41
1.82
35596652--35596756
27
3.9
27
73
14
83
34
9
16
40
1.81
35599711--35599765
23
2.3
24
93
6
94
41
21
9
27
1.83
35603473--35603523
20
2.6
20
84
3
59
58
3
1
35
1.28
35603472--35603542
19
3.7
19
80
10
74
56
5
1
36
1.32
35603479--35603535
20
3.0
19
84
5
71
54
1
1
42
1.21
35603493--35603547
18
3.0
18
84
7
58
52
5
0
41
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35603716--35603746
16
1.9
16
93
0
53
35
6
9
48
1.62
35609274--35609445
93
1.8
93
94
0
308
27
29
22
21
1.99
35609267--35609442
46
3.8
46
76
12
198
28
28
21
21
1.98
35609275--35609461
46
4.0
45
72
18
134
27
28
21
21
1.99
35611822--35611899
14
5.4
14
77
6
75
58
12
17
10
1.61
35614808--35614977
92
1.8
92
96
0
313
28
28
21
21
1.99
35614801--35614974
46
3.8
46
80
12
214
29
28
21
20
1.98
35614808--35614993
46
4.0
46
73
18
145
28
29
20
21
1.98
35626675--35626699
1
25.0
1
100
0
50
0
0
0
100
0.00
35627103--35627200
3
31.3
3
73
19
76
32
4
3
60
1.31
35627111--35627200
13
6.2
15
71
21
68
33
3
3
60
1.30
35627462--35627495
4
8.2
4
90
3
50
26
0
2
70
1.01
35639875--35640339
70
6.5
70
80
4
453
29
15
22
31
1.95
35640358--35640539
73
2.5
70
78
7
168
29
18
22
29
1.97
35640604--35640628
13
1.9
13
100
0
50
16
16
4
64
1.44
35640484--35640672
67
2.8
67
80
7
197
28
15
15
40
1.89
35642513--35642613
3
32.3
3
74
18
82
32
3
2
60
1.30
35642513--35642613
13
8.1
12
76
15
82
32
3
2
60
1.30
35642875--35642911
4
9.2
4
93
0
65
24
0
2
72
0.97
35648776--35648800
2
12.5
2
100
0
50
52
0
0
48
1.00
35654792--35654877
43
2.0
43
97
0
163
46
10
17
25
1.80
35656302--35656343
17
2.4
18
84
11
61
42
9
2
45
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35657160--35657503
171
2.0
172
95
0
627
25
22
10
42
1.85
35659604--35659661
30
1.9
30
86
6
82
20
37
29
12
1.89
35667486--35667516
16
1.9
16
100
0
62
83
0
0
16
0.64
35678180--35678231
23
2.2
24
80
10
63
17
9
3
69
1.31
35678266--35678347
3
27.0
3
71
11
60
28
6
4
60
1.41
35678277--35678347
18
3.9
18
80
12
83
26
4
5
63
1.35
35690199--35690308
44
2.5
44
83
0
130
29
20
18
31
1.96
35690546--35690808
44
5.9
44
75
4
224
33
19
20
26
1.97
35690550--35690813
89
3.0
87
81
3
267
33
19
20
26
1.96
35690503--35690801
133
2.2
133
78
5
291
34
19
20
26
1.96
35692348--35692394
12
3.9
12
77
8
51
27
4
0
68
1.08
35692348--35692394
24
2.0
24
83
8
60
27
4
0
68
1.08
35692445--35692472
6
4.7
6
100
0
56
14
0
0
85
0.59
35692459--35692504
22
2.1
22
83
0
56
19
6
4
69
1.28
35692544--35692585
12
3.4
12
93
3
66
26
2
4
66
1.23
35692543--35692585
3
14.0
3
85
4
59
27
2
4
65
1.25
35694206--35694231
3
8.7
3
100
0
52
69
0
30
0
0.89
35697393--35697424
16
1.9
17
93
6
57
46
6
3
43
1.44
35698895--35698939
17
2.6
17
75
0
54
40
6
0
53
1.27
35699017--35699086
27
2.6
26
82
8
79
25
4
2
67
1.23
35698921--35699208
26
11.0
26
71
12
162
29
4
4
60
1.38
35699022--35699208
50
3.7
51
77
6
184
27
5
5
61
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35700549--35700585
2
18.5
2
94
0
65
48
0
0
51
1.00
35704080--35704114
17
1.9
19
88
11
56
65
11
2
20
1.37
35706185--35706235
16
3.2
16
75
8
52
25
1
1
70
1.08
35706448--35706478
14
2.1
15
94
5
55
29
0
0
70
0.87
35706668--35706712
18
2.7
17
83
12
58
37
0
2
60
1.09
35708521--35708589
33
2.1
33
97
0
129
47
8
18
24
1.77
35708516--35708595
33
2.7
27
74
20
79
50
7
17
25
1.72
35708932--35708969
20
1.9
19
85
15
51
55
0
2
42
1.14
35709231--35709396
26
6.8
26
75
13
124
57
5
2
34
1.35
35709245--35709368
21
5.4
21
68
24
74
58
3
2
35
1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335