genome.fa.s5.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  117  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35709231--35709396	72	2.3	72	93	0	287	57	5	2	34	1.35
35709231--35709444	72	2.9	70	83	10	245	57	4	3	35	1.36
35710303--35710333	3	10.7	3	93	6	55	70	0	0	29	0.87
35710298--35710333	14	2.5	14	90	4	54	75	0	0	25	0.81
35710733--35710797	21	3.1	21	70	16	71	12	0	40	47	1.41
35724068--35724121	22	2.3	24	81	12	69	37	0	3	59	1.15
35725640--35725696	30	1.9	30	85	7	80	40	0	5	54	1.23
35726799--35726865	9	8.2	8	78	20	52	28	0	2	68	1.04
35726819--35726852	7	4.9	7	89	10	52	26	0	0	73	0.83
35726816--35726859	22	2.0	22	86	8	63	29	0	0	70	0.88
35726820--35726865	14	3.1	14	82	17	58	28	0	2	69	1.00
35727382--35727417	18	2.0	18	89	10	56	25	2	0	72	0.98
35727526--35727564	2	19.5	2	100	0	78	51	0	0	48	1.00
35734476--35734731	101	2.5	100	81	5	275	26	26	16	29	1.97
35738545--35738592	16	3.1	15	90	6	69	64	2	2	31	1.16
35738541--35738596	24	2.3	24	81	6	69	66	1	1	30	1.12
35738541--35738592	8	6.5	8	82	8	61	65	1	1	30	1.14
35738743--35738807	25	2.8	24	83	6	80	52	6	7	33	1.55
35738828--35738879	23	2.3	22	77	9	59	48	5	3	42	1.45
35738876--35738921	25	1.9	25	86	8	69	60	0	4	34	1.16
35739475--35739563	37	2.5	35	87	7	124	4	5	12	77	1.09
35740339--35742857	72	33.7	73	85	5	2948	31	20	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35740344--35742857	150	16.8	147	88	4	3061	31	20	16	31	1.94
35740344--35742846	222	11.2	221	89	4	3334	31	20	16	31	1.94
35750865--35750900	12	3.0	12	95	0	63	41	5	25	27	1.77
35752477--35752519	18	2.4	18	80	7	52	74	4	2	18	1.10
35752615--35752679	25	2.8	24	83	6	80	52	6	7	33	1.55
35752665--35752775	57	1.9	60	85	9	158	57	3	5	33	1.39
35752665--35752836	57	2.9	56	77	14	154	57	3	5	33	1.38
35752792--35752842	20	2.5	20	84	9	59	60	0	3	35	1.15
35752803--35752842	21	1.9	21	90	10	64	62	0	5	32	1.17
35753400--35753501	32	3.0	34	83	11	129	4	3	14	76	1.10
35753398--35753487	35	2.5	36	87	8	130	5	4	11	78	1.05
35753398--35753503	36	3.1	34	81	11	128	4	3	14	77	1.07
35755168--35755598	48	9.2	46	70	18	205	60	1	13	24	1.40
35755200--35755320	42	2.7	44	78	10	138	60	1	13	24	1.42
35755292--35755424	26	5.2	26	69	21	95	59	0	12	27	1.34
35755366--35755477	27	4.4	27	68	18	87	55	0	14	29	1.45
35755250--35755477	74	3.1	74	83	7	311	57	0	14	27	1.42
35755440--35755590	42	3.4	42	78	16	162	64	0	10	24	1.30
35755395--35755590	91	2.2	90	86	4	272	61	1	12	24	1.37
35755580--35755663	5	15.6	5	79	7	69	55	0	22	21	1.43
35755585--35755653	12	6.2	11	83	8	79	56	0	24	18	1.42
35755586--35755656	11	6.5	10	79	9	52	54	0	25	19	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35755580--35755663	16	5.2	15	79	11	69	55	0	22	21	1.43
35755854--35755894	15	2.6	16	81	11	50	65	2	4	26	1.25
35755942--35755996	15	3.3	15	73	22	56	65	0	7	27	1.19
35756030--35756151	5	22.4	5	70	18	59	53	0	17	29	1.44
35756055--35756130	28	2.7	28	85	4	100	52	0	15	31	1.43
35756257--35756324	5	12.6	5	80	9	64	58	2	17	20	1.51
35756257--35756297	6	7.3	6	81	13	52	65	0	14	19	1.26
35756257--35756324	11	6.3	10	77	11	64	58	2	17	20	1.51
35756257--35756325	17	4.2	17	76	12	72	59	2	17	20	1.50
35759868--35760000	50	2.7	49	88	4	185	27	20	18	33	1.96
35762193--35762217	3	8.3	3	100	0	50	36	0	32	32	1.58
35775601--35775627	13	2.1	13	100	0	54	14	29	33	22	1.94
35777914--35777958	20	2.2	20	88	7	65	37	6	13	42	1.70
35785042--35785076	2	17.5	2	87	0	52	42	0	5	51	1.25
35788316--35788366	22	2.3	22	93	0	84	31	7	3	56	1.46
35789734--35789800	25	2.7	25	75	9	73	35	19	23	20	1.95
35789762--35789850	26	3.4	27	73	13	80	34	19	24	21	1.96
35790316--35790365	26	1.9	26	87	0	73	40	16	2	42	1.59
35790325--35790355	16	1.9	16	93	0	53	41	12	0	45	1.42
35792249--35792283	18	1.9	18	88	0	52	57	5	14	22	1.59
35794741--35794768	14	2.0	14	100	0	56	64	21	7	7	1.43
35794750--35794850	51	2.0	51	82	5	125	63	10	11	13	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35799680--35799728	3	17.3	3	76	19	52	28	2	0	69	1.00
35799684--35799722	11	3.5	11	92	0	69	28	2	0	69	1.02
35801358--35801835	46	10.4	46	89	2	694	40	14	22	22	1.90
35809054--35809137	26	3.2	26	94	0	141	33	5	23	36	1.79
35810760--35810899	27	5.2	27	86	2	174	18	24	22	35	1.96
35810760--35810899	54	2.6	55	88	2	194	18	24	22	35	1.96
35810961--35811000	19	2.0	22	85	14	59	17	2	47	32	1.61
35824285--35824366	24	3.4	23	74	11	67	37	19	25	17	1.93
35824541--35824595	24	2.3	24	84	6	76	27	18	36	18	1.94
35826653--35826724	24	3.1	23	71	15	67	61	2	1	34	1.19
35829324--35829372	24	2.0	24	100	0	98	36	24	4	34	1.75
35831278--35831302	13	1.9	13	100	0	50	32	0	16	52	1.44
35846916--35846946	13	2.3	14	94	5	55	54	3	0	41	1.16
35847530--35847575	21	2.2	21	92	3	76	39	17	10	32	1.84
35854802--35854854	21	2.7	20	88	11	83	32	5	3	58	1.39
35854805--35854872	35	1.9	35	82	5	84	33	5	4	55	1.44
35855856--35855880	7	3.6	7	100	0	50	28	0	12	60	1.32
35856377--35856475	30	3.3	30	85	2	128	33	43	15	8	1.76
35856381--35856456	15	5.2	13	71	22	62	32	43	14	9	1.77
35856532--35856574	18	2.4	18	88	0	59	18	27	6	46	1.75
35860761--35861761	126	8.0	126	92	0	1628	25	19	18	35	1.95
35860761--35861762	503	2.0	504	93	0	1711	25	19	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35861883--35861955	19	3.8	19	78	7	67	45	20	2	31	1.65
35862024--35862069	21	2.2	21	96	0	83	50	32	0	17	1.47
35862549--35862591	17	2.6	17	85	3	61	32	4	2	60	1.30
35862661--35862705	15	2.9	16	83	6	65	42	8	0	48	1.34
35864785--35864828	16	2.8	17	78	21	51	27	25	6	40	1.80
35865759--35865989	102	2.3	102	96	0	428	33	9	12	43	1.77
35866851--35866884	18	1.9	18	88	5	52	79	5	5	8	1.05
35867021--35867094	3	25.3	3	79	15	84	66	0	33	0	0.92
35867021--35867092	8	9.0	8	80	11	76	66	0	33	0	0.92
35867022--35867103	29	2.8	29	88	5	112	64	0	35	0	0.94
35867118--35867175	20	2.9	20	70	10	55	62	0	37	0	0.96
35867609--35867677	15	4.4	15	74	13	59	71	2	7	18	1.23
35867643--35867675	17	1.9	17	93	0	57	72	0	12	15	1.12
35867717--35867751	11	2.9	12	91	8	54	68	0	2	28	1.04
35867716--35867752	13	3.1	12	88	11	58	64	0	2	32	1.07
35867755--35868017	119	2.2	119	88	2	384	57	9	6	26	1.55
35867985--35868049	13	4.7	13	75	14	58	73	1	3	21	1.05
35867987--35868047	30	2.1	29	90	3	95	72	1	3	22	1.09
35870779--35870852	18	3.9	20	70	23	61	48	13	1	36	1.51
35870769--35870852	26	3.1	26	75	18	98	48	13	1	36	1.50
35870777--35870825	18	2.8	17	87	6	71	48	12	2	36	1.52
35874503--35874623	42	3.1	39	76	10	122	50	14	3	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35874532--35874626	42	2.3	42	84	0	127	53	14	2	29	1.53
35874584--35874649	25	2.6	25	90	2	96	48	7	3	40	1.47
35874664--35874693	13	2.4	12	94	5	51	66	13	0	20	1.24
35874747--35874809	33	1.9	33	83	0	81	3	28	0	68	1.05
35877555--35877600	10	4.3	11	78	15	60	54	8	8	28	1.61
35877556--35877598	22	2.0	22	86	9	61	53	9	9	27	1.63
35889151--35889184	17	1.9	18	88	5	52	50	8	14	26	1.72
35891967--35892019	25	2.1	25	82	6	63	56	5	11	26	1.56
35892047--35892075	2	14.5	2	100	0	58	51	0	0	48	1.00
35896821--35896864	22	2.0	23	86	4	63	31	6	27	34	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335