Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  297  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88644521--88644556
2
18.5
2
94
5
65
47
0
0
52
1.00
88644842--88644871
15
2.0
15
100
0
60
20
40
26
13
1.89
88645451--88645491
19
2.1
20
90
4
66
58
0
0
41
0.98
88645455--88645514
27
2.2
27
88
5
86
56
1
0
41
1.09
88650082--88650168
39
2.2
41
81
4
106
66
8
2
22
1.30
88654406--88654450
22
2.0
22
100
0
90
22
15
17
44
1.86
88654957--88655009
26
2.0
28
92
7
92
16
22
11
49
1.78
88656490--88656554
32
2.0
32
93
0
112
15
15
13
55
1.70
88657246--88657298
26
2.0
28
92
7
92
16
22
11
49
1.78
88671082--88671170
21
4.1
21
74
5
88
16
20
26
35
1.94
88671080--88671161
21
3.7
23
77
7
91
15
23
25
35
1.94
88674919--88674959
21
2.0
21
85
0
55
31
21
26
19
1.97
88678544--88678578
7
5.0
7
100
0
70
57
0
0
42
0.99
88687825--88687908
45
2.0
42
88
9
125
16
8
10
64
1.48
88688815--88689241
126
3.4
126
81
2
487
28
14
17
39
1.89
88695802--88695909
44
2.4
44
87
3
144
29
23
13
33
1.93
88703184--88703291
44
2.4
44
87
3
144
29
23
13
33
1.93
88704420--88704455
2
18.0
2
100
0
72
50
0
0
50
1.00
88706602--88706654
26
2.0
28
88
7
83
15
24
11
49
1.77
88734614--88734830
105
2.1
105
84
1
274
32
13
24
28
1.94
88737285--88737549
46
5.7
46
91
0
368
21
24
13
40
1.90
88739366--88739412
8
6.1
8
78
7
53
59
2
0
38
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88739619--88739687
30
2.3
31
80
7
79
27
18
4
49
1.67
88745633--88745683
22
2.3
22
79
0
66
58
7
11
21
1.58
88747067--88747120
23
2.3
25
75
12
60
40
0
1
57
1.09
88747074--88747130
22
2.6
23
78
15
66
40
0
1
57
1.09
88747078--88747153
33
2.2
35
84
9
95
40
0
1
57
1.07
88747245--88747280
18
2.0
18
88
0
54
58
5
2
33
1.36
88750021--88750046
2
13.0
2
100
0
52
50
0
0
50
1.00
88751410--88751469
31
2.0
30
87
6
86
46
8
11
33
1.70
88753034--88753069
18
2.0
18
100
0
72
61
5
11
22
1.50
88758717--88758764
22
2.1
24
84
7
64
33
2
6
58
1.35
88772872--88772929
3
19.3
3
100
0
116
32
0
0
67
0.91
88773513--88773544
2
16.0
2
93
0
55
46
0
0
53
1.00
88773880--88773920
19
2.2
19
86
8
57
29
0
2
68
1.03
88775159--88775580
210
2.0
210
86
0
583
30
13
25
30
1.94
88775662--88775715
26
2.1
26
100
0
108
35
35
11
18
1.86
88779070--88779112
19
2.2
19
83
4
50
34
9
9
46
1.68
88779081--88779120
19
2.1
19
100
0
80
32
10
10
47
1.70
88779510--88779619
3
39.0
3
74
8
72
63
0
6
29
1.25
88779732--88779791
2
31.5
2
85
9
81
55
1
0
43
1.10
88779964--88780010
21
2.3
20
81
3
58
63
0
8
27
1.23
88780094--88780145
21
2.6
21
78
6
54
59
1
11
26
1.42
88781525--88781602
41
1.9
41
86
0
111
24
16
20
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88781733--88782041
87
3.5
87
86
1
413
20
23
22
33
1.97
88781795--88782039
43
5.7
43
66
14
162
20
22
22
33
1.97
88788777--88788847
34
2.1
34
100
0
142
67
2
21
8
1.30
88789121--88789156
18
2.0
18
88
0
54
27
0
2
69
1.02
88791185--88791210
12
2.2
12
100
0
52
50
7
7
34
1.60
88791818--88791859
3
14.3
3
87
5
50
59
0
40
0
0.97
88791818--88791862
23
2.0
23
90
0
72
57
0
42
0
0.98
88792333--88792375
16
2.5
17
82
17
54
81
6
0
11
0.87
88792332--88792375
15
2.9
15
83
12
54
81
6
0
11
0.86
88793572--88793617
25
2.0
24
83
12
60
30
6
2
60
1.34
88793594--88793637
14
3.0
14
80
9
52
29
4
2
63
1.26
88794508--88794618
56
2.0
56
98
0
213
28
18
15
37
1.91
88804601--88804640
19
2.1
19
100
0
80
35
15
25
25
1.94
88805744--88806449
44
16.2
44
82
6
762
30
13
26
28
1.94
88806050--88806171
37
3.1
37
80
15
138
27
12
29
31
1.93
88805821--88806532
213
3.3
220
80
6
583
30
14
26
28
1.95
88806773--88806814
16
2.5
17
85
14
61
83
4
0
11
0.79
88806773--88806814
15
2.5
17
88
11
61
83
4
0
11
0.79
88808127--88808170
14
3.0
14
80
9
52
29
4
2
63
1.26
88809040--88809151
56
2.0
56
94
0
197
25
17
18
38
1.93
88810522--88810643
48
2.5
48
85
0
163
46
14
12
26
1.80
88810654--88810718
6
11.0
6
78
1
51
58
15
6
20
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88810728--88810770
18
2.4
18
76
0
50
58
9
9
23
1.58
88810797--88810822
10
2.6
10
100
0
52
57
23
0
19
1.40
88811257--88811296
21
1.9
21
94
0
71
22
30
20
27
1.98
88811565--88811603
2
19.5
2
94
0
69
48
0
0
51
1.00
88811847--88811875
2
14.5
2
100
0
58
51
0
0
48
1.00
88811878--88811919
20
2.1
20
100
0
84
30
4
4
59
1.39
88816953--88816993
21
2.0
21
90
0
64
53
7
14
24
1.66
88818928--88818958
16
1.9
16
100
0
62
38
12
29
19
1.89
88819219--88819246
12
2.3
12
100
0
56
7
14
32
46
1.71
88819851--88819893
7
6.0
7
78
5
50
20
0
30
48
1.50
88819851--88819893
14
3.0
14
86
3
59
20
0
30
48
1.50
88819851--88819896
15
3.1
15
81
6
58
19
0
30
50
1.48
88819900--88819947
22
2.2
21
82
10
62
20
0
39
39
1.53
88819865--88820013
7
20.9
7
68
11
52
23
0
34
41
1.55
88820620--88820671
14
3.8
13
80
7
59
59
1
1
36
1.19
88823455--88823678
43
5.2
43
87
1
315
26
19
29
25
1.99
88825615--88825660
24
1.9
24
86
8
67
4
0
39
56
1.19
88826059--88826090
14
2.3
14
100
0
64
6
25
37
31
1.81
88827256--88827311
3
18.7
3
75
14
53
30
3
1
64
1.21
88827234--88827311
28
2.8
29
81
13
92
29
3
1
65
1.18
88829030--88829072
19
2.2
20
87
4
61
27
20
9
41
1.83
88834936--88834972
18
2.0
19
94
5
67
24
16
27
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88835271--88835349
3
26.3
3
97
0
149
0
32
1
65
1.00
88837846--88838032
71
2.7
68
93
5
281
18
28
18
34
1.95
88837869--88838032
71
2.3
71
100
0
328
18
28
17
35
1.94
88837869--88838066
71
2.8
70
92
3
276
20
28
17
33
1.95
88845416--88845602
71
2.7
68
93
5
281
18
28
18
34
1.95
88845439--88845602
71
2.3
71
100
0
328
18
28
17
35
1.94
88845439--88845636
71
2.8
70
92
3
276
20
28
17
33
1.95
88847977--88848031
28
2.0
27
92
3
92
49
10
12
27
1.74
88848243--88848288
3
15.3
3
100
0
92
65
0
0
34
0.93
88850681--88850718
19
2.1
18
90
5
58
42
0
13
44
1.43
88850681--88850720
20
2.1
18
86
9
53
42
0
12
45
1.42
88857656--88857866
64
3.2
64
62
20
151
29
26
18
26
1.98
88857622--88857908
137
2.1
137
98
0
556
31
25
19
24
1.98
88858156--88858209
26
2.1
27
82
6
67
24
14
24
37
1.93
88858173--88858248
26
2.8
27
82
4
82
27
13
22
36
1.91
88859696--88859805
26
4.2
26
95
0
184
35
23
5
35
1.78
88869642--88869691
22
2.2
24
85
7
68
50
0
2
48
1.12
88869645--88869724
25
3.2
26
77
15
78
47
0
1
51
1.08
88869701--88869757
15
3.5
15
71
17
51
50
3
0
45
1.18
88870154--88870214
27
2.3
27
86
8
81
9
4
4
80
1.01
88870203--88870243
19
2.1
20
86
4
57
24
2
0
73
0.96
88870209--88870250
19
2.2
19
83
8
50
28
4
0
66
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88870252--88870323
21
3.3
21
81
11
81
45
0
2
51
1.15
88870313--88870392
21
3.8
19
81
15
56
37
2
3
56
1.31
88870331--88870391
21
3.0
20
88
9
70
40
1
1
55
1.19
88870360--88870408
20
2.3
20
82
10
53
46
4
0
48
1.20
88870509--88870566
23
2.4
25
85
11
84
43
0
0
56
0.99
88870525--88870614
32
2.7
33
83
14
130
40
1
0
58
1.05
88870549--88870598
20
2.4
22
83
12
70
34
2
0
64
1.05
88870591--88870653
28
2.3
26
81
10
72
46
0
1
52
1.10
88870251--88870723
234
2.0
235
89
6
719
41
2
2
53
1.28
88870676--88870737
31
2.1
28
88
8
88
35
0
3
61
1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335