Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  136  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40095910--40095934
11
2.3
11
100
0
50
32
0
0
68
0.90
40095902--40095933
16
1.9
17
93
6
57
34
0
3
62
1.11
40097137--40097196
24
2.6
23
74
10
59
30
0
10
60
1.30
40097359--40097462
55
1.9
53
83
11
131
34
3
6
54
1.45
40097429--40097503
23
3.0
24
76
14
71
34
9
4
52
1.53
40097516--40097623
3
35.7
3
78
9
103
33
7
0
58
1.32
40099889--40099934
19
2.4
19
85
7
58
19
17
13
50
1.78
40104350--40104481
66
2.0
66
90
0
210
32
21
10
35
1.88
40104542--40104843
87
3.4
87
84
2
390
33
23
23
19
1.97
40104552--40104791
44
5.5
43
67
15
143
33
22
24
19
1.97
40104896--40105512
45
13.5
44
70
13
263
34
18
19
27
1.96
40104928--40105512
137
4.3
137
90
0
857
34
19
19
26
1.96
40105041--40105421
41
8.5
40
68
18
132
34
19
20
25
1.96
40106692--40106751
24
2.6
23
74
10
59
30
0
10
60
1.30
40106907--40106949
22
1.9
23
90
4
70
39
2
0
58
1.11
40107075--40107171
3
32.7
3
77
10
92
32
7
1
58
1.32
40109078--40109500
137
3.1
137
95
0
776
32
25
17
24
1.97
40109765--40109840
26
2.8
27
82
4
82
27
13
22
36
1.91
40111286--40111421
26
5.2
26
97
0
236
36
24
5
33
1.78
40117999--40118249
125
2.0
125
97
0
475
24
9
30
35
1.87
40118263--40118321
18
3.2
18
68
13
57
27
3
20
49
1.65
40118252--40118328
37
2.1
37
100
0
154
25
2
23
48
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40121317--40121400
26
3.2
26
91
0
132
34
5
22
36
1.79
40128001--40128287
137
2.1
137
97
0
538
24
18
24
31
1.98
40131382--40131465
19
4.2
19
70
16
53
61
1
4
32
1.24
40131379--40131474
35
2.5
38
77
16
92
62
1
4
32
1.21
40131447--40131564
15
7.9
15
70
11
55
60
0
5
33
1.25
40131459--40131523
24
2.7
24
83
7
78
63
0
7
29
1.22
40131513--40131556
19
2.2
20
84
4
54
56
2
2
38
1.24
40131574--40131613
15
2.5
16
88
8
55
72
5
0
22
1.04
40133191--40134255
205
5.2
205
85
2
1314
28
21
19
30
1.97
40133191--40134101
411
2.2
411
94
0
1597
28
21
18
31
1.97
40134977--40135262
136
2.1
137
96
0
520
32
25
18
24
1.97
40135519--40135574
26
2.2
26
83
3
69
30
14
19
35
1.91
40137051--40137186
26
5.2
26
94
0
236
36
25
5
33
1.78
40145618--40145667
15
3.5
15
82
15
61
42
10
24
24
1.85
40146281--40146315
13
2.7
13
90
0
52
11
25
14
48
1.77
40149820--40149934
24
4.8
25
74
19
88
62
0
3
33
1.12
40149772--40149962
85
2.3
83
79
12
203
60
1
5
32
1.29
40149969--40150006
15
2.5
15
87
12
51
68
5
0
26
1.11
40152230--40152279
11
4.3
11
76
14
55
16
4
8
72
1.24
40159706--40159877
93
1.8
93
96
0
317
27
30
22
20
1.98
40159698--40159873
46
3.8
46
81
10
232
28
29
21
20
1.98
40162256--40162344
30
3.0
30
80
8
101
57
15
16
10
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40162256--40162335
15
5.4
15
80
7
92
58
13
17
10
1.62
40162267--40162344
15
5.2
15
78
9
79
56
15
16
11
1.67
40165285--40165414
46
2.8
48
81
11
171
29
29
20
20
1.98
40165290--40165433
46
3.1
45
75
11
148
29
29
20
20
1.98
40166857--40166965
26
4.2
26
92
1
175
33
5
23
36
1.78
40168447--40168495
25
2.0
25
84
8
64
38
20
16
24
1.92
40168743--40169025
135
2.1
135
97
1
532
24
19
25
31
1.98
40170267--40170297
12
2.6
12
100
0
62
9
25
51
12
1.70
40175161--40175269
26
4.2
26
92
1
175
33
5
23
36
1.78
40176754--40176806
26
2.0
26
82
7
63
37
20
15
26
1.92
40177054--40177339
137
2.1
136
94
0
500
23
19
24
31
1.98
40178324--40178379
28
2.0
28
100
0
112
35
10
17
35
1.85
40189989--40190098
54
2.0
54
96
0
202
40
23
16
20
1.91
40194754--40194820
30
2.2
30
84
5
82
26
19
26
26
1.99
40194767--40194886
30
3.8
30
71
20
75
28
14
28
29
1.95
40194767--40194925
66
2.4
65
80
8
169
28
12
29
29
1.93
40199964--40200205
131
1.8
131
85
3
344
28
17
17
36
1.93
40199964--40200233
131
2.1
131
82
7
336
30
18
16
35
1.93
40205516--40205702
63
2.9
64
89
1
277
34
15
12
37
1.85
40205724--40206512
131
6.0
131
91
0
1191
28
16
25
28
1.97
40208763--40208817
30
1.9
26
82
17
65
30
16
0
52
1.44
40209548--40209788
131
1.8
131
84
5
335
29
17
17
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40209548--40209820
131
2.1
130
82
6
329
29
17
15
36
1.92
40209564--40209881
131
2.4
131
77
6
286
29
18
18
34
1.94
40212171--40212249
23
3.4
21
72
19
59
54
12
0
32
1.38
40212171--40212245
25
3.1
25
73
17
70
56
12
0
32
1.36
40212730--40212769
21
1.9
21
89
0
62
15
20
32
32
1.93
40216523--40216589
5
13.0
5
79
17
75
77
0
1
20
0.85
40216523--40216589
16
4.3
16
80
16
79
77
0
1
20
0.85
40219914--40219969
24
2.3
24
82
14
62
17
0
41
41
1.50
40226923--40226952
11
2.7
11
89
0
51
60
0
0
40
0.97
40227798--40227830
14
2.4
14
90
10
50
0
9
3
87
0.63
40228766--40229044
74
3.8
74
89
2
368
28
21
18
31
1.97
40228721--40229044
74
4.5
72
86
5
345
29
21
17
31
1.96
40229070--40229203
71
1.9
71
90
0
214
29
23
16
30
1.96
40228912--40229612
159
4.4
160
96
0
1237
31
22
17
28
1.96
40229229--40229521
71
3.9
71
70
14
244
31
22
16
29
1.96
40243017--40243056
20
1.9
20
90
10
62
7
5
12
75
1.18
40243062--40243106
18
2.5
18
82
7
56
6
2
26
64
1.30
40243097--40243129
14
2.4
14
90
10
50
0
9
3
87
0.63
40255486--40256207
207
3.5
209
87
2
1028
31
18
21
28
1.97
40258116--40258187
31
2.3
31
79
13
85
34
5
0
59
1.21
40258222--40258262
9
4.7
9
82
14
50
29
0
4
65
1.13
40262279--40262320
5
8.0
5
92
5
66
78
0
2
19
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40274885--40275190
38
8.1
38
80
2
312
16
18
31
33
1.93
40276294--40276770
239
2.0
238
93
1
821
30
10
31
27
1.90
40287188--40287250
30
2.1
29
85
8
83
36
0
3
60
1.13
40287213--40287266
11
4.7
11
84
8
63
33
0
5
61
1.19
40288999--40289110
45
2.5
45
88
2
154
38
16
23
22
1.93
40289046--40289304
46
5.7
44
82
9
157
41
14
23
20
1.89
40289092--40289342
46
5.5
46
89
2
362
44
13
22
19
1.85
40289314--40289369
29
1.9
29
85
0
76
50
7
21
21
1.72
40289668--40289711
17
2.5
17
82
10
54
52
2
13
31
1.53
40295521--40295838
38
8.4
38
82
1
350
16
20
30
33
1.94
40303749--40303807
21
2.8
22
79
7
68
15
27
35
22
1.94
40305479--40305532
27
2.0
27
82
10
67
25
14
9
50
1.73
40305728--40305776
18
2.8
18
90
3
73
22
0
6
71
1.08
40306134--40306168
16
2.3
15
90
5
52
82
0
2
14
0.77
40310029--40310163
48
2.8
48
85
2
173
31
28
15
24
1.96
40310614--40310656
20
2.2
20
82
0
50
44
2
2
51
1.27
40311517--40311646
46
2.8
49
80
12
164
29
26
20
23
1.99
40311519--40311662
46
3.1
45
73
18
136
29
27
20
22
1.98
40319023--40319196
47
3.8
49
78
13
172
29
27
20
22
1.98
40319023--40319193
46
3.7
46
79
11
199
30
27
19
22
1.98
40319028--40319196
93
1.8
91
91
2
275
29
28
20
21
1.98
40319071--40319212
46
3.1
45
74
18
132
28
28
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40321657--40321834
51
3.5
52
88
6
242
29
14
28
27
1.95
40327230--40327392
43
3.8
43
77
8
136
27
16
24
31
1.96
40328348--40328418
18
3.9
18
73
14
65
38
15
5
40
1.71
40329282--40329343
30
2.1
30
93
0
106
43
24
17
14
1.86
40336769--40336898
48
2.7
48
86
0
179
33
26
15
24
1.95
40346750--40346779
13
2.2
14
94
5
53
53
13
0
33
1.40
40351440--40351580
66
2.1
68
86
2
196
31
15
26
26
1.96
40351491--40351735
101
2.4
101
86
1
350
32
16
23
27
1.96
40354853--40355025
46
3.7
46
78
13
210
21
21
27
28
1.99
40354850--40355020
93
1.8
93
96
0
315
21
21
28
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335