Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  123  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37168668--37168715
23
2.2
21
81
7
51
33
2
2
62
1.18
37170835--37170863
5
5.8
5
100
0
58
82
0
0
17
0.66
37172071--37172108
17
2.2
17
86
9
51
68
10
0
21
1.19
37175326--37175678
37
9.5
37
77
6
336
38
18
15
27
1.91
37175346--37175678
112
3.0
112
82
1
364
38
18
15
27
1.91
37175326--37175673
149
2.3
149
83
1
419
38
18
15
27
1.91
37179994--37180165
93
1.8
93
96
0
317
27
29
21
20
1.98
37179987--37180162
46
3.8
46
79
12
216
28
29
21
20
1.98
37187573--37187744
93
1.8
93
96
0
317
27
29
21
20
1.98
37187566--37187741
46
3.8
46
79
12
216
28
29
21
20
1.98
37189133--37189162
2
15.0
2
100
0
60
50
0
0
50
1.00
37190976--37191019
6
7.3
6
100
0
88
47
15
18
18
1.83
37194009--37194123
38
3.0
39
89
2
187
23
20
28
26
1.99
37201652--37201777
39
3.2
39
90
0
198
22
19
29
29
1.98
37201652--37201815
78
2.1
78
80
5
181
22
20
28
28
1.98
37202955--37202979
12
2.1
12
100
0
50
16
8
0
76
1.02
37203199--37203236
19
2.0
20
89
5
60
44
13
2
39
1.57
37210096--37210128
11
2.8
12
86
4
50
0
18
0
81
0.68
37210176--37210200
12
2.1
12
100
0
50
16
8
0
76
1.02
37210212--37210263
25
2.1
25
82
7
61
42
1
1
53
1.23
37210419--37210469
20
2.6
20
78
12
61
43
15
1
39
1.58
37213968--37213994
13
2.1
13
100
0
54
14
33
22
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37218711--37218788
40
2.0
40
84
0
102
35
32
11
20
1.88
37229228--37229281
23
2.4
23
81
3
65
11
5
33
50
1.61
37229567--37229684
44
2.7
43
83
7
130
22
23
16
36
1.94
37229584--37229878
44
6.4
44
71
14
202
26
20
16
36
1.94
37229629--37229983
94
3.8
91
80
6
370
28
18
16
36
1.92
37229629--37230025
188
2.1
188
81
4
453
28
18
16
36
1.93
37238570--37238608
20
2.0
20
89
0
60
15
23
38
23
1.92
37239580--37239616
17
2.2
17
100
0
74
29
40
5
24
1.77
37240403--37240441
18
2.2
18
86
9
53
10
12
0
76
1.01
37240408--37240436
13
2.1
14
93
6
51
6
13
0
79
0.93
37244539--37244577
19
2.1
19
100
0
78
41
25
23
10
1.86
37252140--37252360
40
5.6
40
84
7
265
21
22
29
26
1.99
37253741--37253802
23
2.6
23
78
14
63
72
6
1
19
1.15
37261893--37262030
65
2.1
65
94
0
240
30
21
20
28
1.98
37271915--37271974
10
6.0
10
81
11
70
66
1
10
21
1.30
37273947--37273985
20
2.0
20
100
0
78
71
0
5
23
1.05
37279106--37279144
20
2.0
20
100
0
78
33
0
10
56
1.33
37279673--37279712
19
2.0
20
85
14
55
62
2
12
22
1.42
37280841--37280892
23
2.3
23
86
0
68
13
11
40
34
1.81
37283794--37283840
22
2.1
22
100
0
94
44
12
19
23
1.85
37293487--37293812
174
1.9
174
79
3
368
42
21
8
27
1.81
37296452--37296517
22
2.8
22
81
9
60
59
1
6
33
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37300951--37301003
3
17.7
3
100
0
106
66
0
0
33
0.92
37306215--37306340
60
2.1
60
82
7
148
41
14
6
38
1.71
37307448--37307548
11
8.9
11
69
6
58
65
6
2
24
1.32
37307451--37307537
14
6.3
13
72
13
59
64
5
2
27
1.28
37309214--37309243
15
2.0
15
100
0
60
33
13
6
46
1.69
37311678--37311721
23
1.9
23
85
0
61
20
13
4
61
1.50
37311789--37311814
2
13.0
2
100
0
52
50
0
0
50
1.00
37315786--37315825
14
2.9
14
85
3
55
40
5
0
55
1.22
37317247--37317274
3
9.3
3
100
0
56
32
0
0
67
0.91
37317689--37317715
12
2.2
12
100
0
54
14
0
18
66
1.25
37318199--37318241
17
2.4
19
81
11
56
41
0
2
55
1.12
37318281--37318448
87
1.9
89
80
7
200
39
7
11
40
1.71
37320381--37320421
21
2.0
21
85
0
55
34
26
7
31
1.84
37321542--37321580
16
2.4
16
91
8
62
30
0
12
56
1.37
37321794--37321826
14
2.3
15
89
5
50
33
0
0
66
0.92
37322007--37322046
19
2.1
19
85
0
53
30
12
22
35
1.91
37328606--37328649
7
6.4
7
94
5
81
86
0
0
13
0.57
37329091--37329264
39
4.4
39
80
7
165
31
21
19
28
1.97
37329718--37329830
7
15.9
7
74
10
68
19
0
40
38
1.58
37329718--37329830
21
5.3
21
74
5
75
19
0
40
38
1.58
37329928--37329953
7
3.7
7
100
0
52
15
0
38
46
1.46
37329977--37330019
15
3.0
15
86
6
63
25
0
27
46
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37329949--37329997
22
2.2
22
81
0
62
28
0
22
48
1.50
37330283--37330345
7
8.6
7
85
5
54
66
3
0
30
1.07
37330293--37330345
7
6.9
8
85
12
58
71
3
0
24
1.02
37330482--37330567
42
2.1
42
88
2
129
48
12
13
24
1.78
37335178--37335203
13
2.0
13
100
0
52
23
0
23
53
1.46
37335524--37335837
43
7.3
43
82
1
344
24
17
28
29
1.97
37335524--37335844
86
3.8
86
88
0
385
25
17
28
29
1.97
37335524--37335855
129
2.6
127
84
4
380
26
17
27
28
1.98
37336769--37336809
21
2.0
21
85
9
57
51
4
19
24
1.66
37338042--37338085
20
2.1
21
95
4
81
63
4
9
22
1.42
37338036--37338085
20
2.3
22
83
16
77
66
4
8
22
1.35
37338196--37338240
17
2.6
18
83
16
60
68
0
8
22
1.16
37338319--37338947
3
207.0
3
68
10
267
59
3
7
28
1.43
37340445--37340496
26
2.0
26
84
3
68
55
3
9
30
1.50
37340548--37340595
3
16.0
3
95
0
87
68
0
0
31
0.90
37344361--37344412
3
17.3
3
100
0
104
32
0
0
67
0.91
37344850--37344919
34
2.2
32
82
10
81
57
1
0
41
1.08
37345314--37345355
15
2.9
14
74
19
50
57
2
0
40
1.12
37346189--37346324
26
5.2
26
92
0
227
32
5
25
36
1.78
37348109--37348395
137
2.1
137
98
0
547
25
19
24
31
1.98
37349721--37349787
30
2.2
30
81
7
73
40
5
2
50
1.42
37352431--37352461
2
15.5
2
100
0
62
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37352663--37352706
3
14.7
3
100
0
88
68
0
0
31
0.90
37354443--37354621
96
1.9
97
87
5
265
29
21
16
32
1.95
37354365--37355054
44
15.4
43
71
11
242
28
22
19
30
1.98
37354539--37355104
133
4.3
133
86
0
729
28
22
19
30
1.98
37354306--37354742
229
1.9
229
88
0
660
28
21
18
30
1.97
37354310--37355104
89
8.9
90
70
11
317
28
22
18
30
1.97
37366432--37366898
254
1.8
254
84
0
639
38
18
13
29
1.89
37367368--37367430
27
2.3
26
79
12
65
52
3
6
38
1.43
37367600--37367670
3
23.7
3
100
0
142
67
0
0
32
0.91
37371491--37371566
33
2.3
33
95
0
134
42
3
38
15
1.66
37376712--37376778
34
2.0
34
82
11
84
46
5
5
41
1.53
37376762--37376797
17
2.1
18
89
5
56
58
0
5
36
1.22
37376932--37376978
17
2.9
17
76
17
55
48
2
0
48
1.13
37378550--37378574
13
1.9
13
100
0
50
36
24
24
16
1.94
37389037--37389069
17
2.1
16
88
11
50
30
0
0
69
0.88
37389145--37389194
26
2.0
24
88
7
73
30
0
6
64
1.18
37402200--37402619
213
2.0
214
90
1
664
23
14
31
30
1.94
37403764--37403808
13
3.7
13
74
14
51
37
2
0
60
1.09
37403740--37403991
140
1.8
140
94
0
450
38
4
4
51
1.43
37403964--37404004
19
2.2
19
90
0
64
39
4
2
53
1.35
37403887--37404225
170
2.0
175
91
3
553
38
5
6
50
1.49
37404134--37404186
19
2.8
18
74
8
52
37
5
3
52
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37406644--37406745
3
35.7
3
69
9
61
65
1
5
26
1.26
37406644--37406723
11
7.9
10
76
18
51
65
1
6
27
1.25
37406686--37406723
19
2.0
19
94
0
67
73
2
2
21
1.07
37407450--37407497
3
16.0
3
95
0
87
66
2
0
31
1.03
37408653--37408678
10
2.6
10
100
0
52
0
30
19
50
1.48
37412836--37412921
5
15.8
5
77
12
57
19
3
0
76
0.92
37412838--37412913
27
2.8
25
76
21
73
19
3
0
76
0.94
37412835--37412921
37
2.4
35
86
7
113
19
4
0
75
0.97
37413027--37413130
42
2.5
42
88
1
147
28
34
11
25
1.91
37415842--37415903
20
3.0
21
66
4
63
33
20
17
27
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335